RNA id: XM_043242271.1


Basic Information

Item Value
RNA id XM_043242271.1
length 7338
RNA type mRNA
GC content 0.44
exon number 35
gene id lrrc7
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13986047 ~ 14040163 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atccattcagcaGAAATAAGGGACAAGATGGATAGAATGCAAGAAGACGCGCGCGGGCCGTAGCTACAGACTCCCGTCACGACATGTCACTTGTCATGACAGAGACGTCTATGGGCTTCATCGAATATGCGTAACGAGAGAAGCAGACACGATTTAATCGTTGGCAATGAACTTGAATTTCCATTCCTCCACATTAACGGGAGGGAATGGCTCAATACACAGATTCCTAAATGCTTTGGAACATAATTCTTTTTTCGCTTGATCTCAGTAAGACATCAGTAGAGCAGTCTGTCAGTGCTCAGCGCATTATGTCCGTTCAGTGCTGCATTGATGTAAGGGAAACGCTGGAGCGGAGGACAGACCGAAGCGTCGTGTGATGTGACTCGTGTCTCTGGGATTAGCCTACTGCTGGAGTACCAAACAATCTGTAGAAATAGTCTAATGGACAATTACTCAACGCTTCAGTTGCAGTGTCTGGAGATGACTACTAAGAGGAAGATCATCGGCCGCCTGGTGCCCTGTCGATGCTTCCGGGGGGAGGAGGAGGTCATCTCAGTGCTGGATTATTCCCACTGTAGCCTGCAGCAGGTCCCTAAGGAGATCTTCAGCTTCGAGCGCACGCTAGAGGAGCTCTACCTTGACGCCAACCAGATTGAGGAGCTGCCTAAGcAACTCTTCAACTGTCAAGCACTCAAGAAGCTGAGCATGCCTGACAATGACCTCTCCAACCTGCCAACCACCATCGCCAGCCTTGTGAATCTAAAGGAATTAGATATTAGTAAAAATGGTATTCAAGAGTTTCCAGACAACATCAAATGCTGTAAATGTCTATCAGTTGTGGAGGCCAGTGTAAATCCTATAGCCAAGTAAGCTCCCAGACGCTTCACCCAGCTCCTCAACTTGACACAGCTCTTCTTAAATGACGTCCTTGAATACCTGCCTGCCAATTTTGGGAGattATCTAAATTACGGATCCTGGAACTTCGTGAGAATCATCTGAAAACTATGCCAAAGTCAATTCATAGGCTGTCGCAGCTGGAGCGGTTAGACTTGGGAAGCAATGAATTCTCTGAACTGCCAGAAGTATTGGAGCAGATCCATAGTTTAAAAGAGCTGTGGTTGGACAACAATTCATTACAAACCATACCAGGGTCTGTTGGGAAACTGAGGCAGCTGCGATATCTAGACTTGGCTAAGAACAGGATTGAGAGTCTAGATGCAGATATCTCTGGCTGTGAGTCCTTAGAGgatctcctcctctcctccaaCATGCTGCAACAGTTACCTGATACAATAGGAAAGTTGAAAAAGTTGACAACATTAAAAGTTGATGACAACCAGCTCACCTCACTGCCTAACACCATTGGAAGTGCACGTGGCAAAACCGGTTTATCACTTTTAGAGGAGTTTGACTGTAGCTGTAATGAACTGGAATCCCTGCCTCCCACCATTGGCTACCTGCACAGTCTTCGGACATTTGCGGCCGATGAGAACTTCCTGTCTGAGCTGCCCAGGGAGATTGGAAACTGCAGGAATGTTACGGTCATGTCCTTGCGCTCCAATAAACTAGAGTTTCTGCCTGATGAAATTGGACAGATGACAAAGCTACGTGTTCTCAATCTAAGTGACAATAGGTTAAAGAATCTTCCCTTCACTTTCACTAAATTGAAAGATCTTGCTGCACTCTGGTTATCTGACAATCAGTCCAAGGCCCTTATCCCCCTTCAAACAGAGGCTCACCCTGAGACCAAACAGAGAGTCCTTACCAACTACATGTTTCCTCAGCAGCCCCGGCACGATGAGGATTACCAGTCTGACAGTGACAGCTTTAATCCCACTCTCTGGGAAGAACAGAGACAGCAGAGGATGACTGTGGCATTTGAGTTTGAGGACAAGAAGGAAGAAGAGGACAACTCAGGAAAAGTGAAGGTTGAGATTAATCTGAAGCGCTACCCCACCCCTTACCCAGAAGACCTAAAGAACATGGTGAAGTCAGTGCAGAATCTGGTGGGTAAAACCACTCACCCCAACACTGAAAAATGCTCTTCTGGGACCAATATGGAGCTCCACAGCCAAGACAAGTATGAGCCCAAGTGGCCCATTGCTCCGAAAGAGGTGACAGAACGAGAGGTCAAAGACTTCTCAAAACCACCAATGTCCGATCAAGGCGTCATCCTCAACTCAGCCATTGACATCCCAAAACGCAAAGACAAAGAGGATCTGACTGAGAGCTCGGAAATTTCTTTACATCGCGTCGTTCCCAAGCCGCAACAGCCAGAGAATACGAGCCTGGCCGttacttcctcttcctgtttctGCCTCATAGACTCCATGGGAGGCTCCCCTAATGATATCCGAATTTCTGACATGCGGCCGACTTTGGTAGAGCCACCAATGTACAAACCAAAGGTTGTGTTACTGGGCAAGGAAAAAAAGGTTGAGTCCACCGATGAGTCTGAGCCGgacaaaatgcattgtttgaaCAACAGCGGATCATCTGCCACTTATTCAGACTACTCACCCTCCCAGGGATCGTCTGGCTCCTCCAACCCACCTGGAAATGTCAGTAATCTGCAAACATCTGGGAAAGAGGGGCCAGCACAGACTCACTGGACCAACAGGCTGGCTCAGTCTTTTCCAAAGCCCATTGAAAGCAAGCCCCTTCTGAGCCAGAGGGAAACACCTCCATCCAGCACGCTGCAGCAGCGAGGTGAGAGGCGGCCACTGAGCGACACCTTTGACAGCTGGAACAACGCCCCCCACTACGATAACACAGGGTTTGTCGCAGAGGAGACGCCTCTTGACACTCCGAGCAGCAGCGCTGGAAACCCCATGCTAGGCTCAAAGCCCCGGAGTGCCTCGATGGCGCATGGCCGACGGCCTCTCATGAGACAAGAGCGCATTGTGGGAGTCCCTCTAGAGCTCGATCAGTCGCAGCTCACGTTCCACACTGTTCGCAACCCTGAAACTGAAGTGCCTGCTCCTAACCCCTGGCAGAACTGGACGAGGACTCCCAGTCCCTTCGAGGACAGGACAGCTTTCCCTTCAAAGTTGGAAATTACTCCAGCCAACAGCCCCAATCCTGATCGCAAGGACTTTGAACAGGAGATGGGGGAACTACCCGGCACTTTTCCCTCAACTAGAGCCTGGGGTTTCTGGACTCTACGGACTCAGGGGACGGGACGAGGTCATCCCAACATTTCTGCGCATATCCGGCGAAAAGAACCAAACAAAGTAGGCACTATGGTCATCAGCAAGAGTTCTGAAAGACTTTCCCCAATGATGAAGGAGGTAAAAGCGAAATTCAAGAAATCACAGAGCATAGATGAAATCGATATGGGGTCGTATAAGGTTTACAGCATTCCCTTGGACAGCTACAGTTCTAGCATAGAAAACCAGGGAAGTGTTGATAGAGCGGACCTACCTGTACCTCTAGAACAGAGCATGTCCAGGAGCCAATCTGCTCCAATGCTGGACGACGATCTGGATGGCTTTGGTTCGAAAATCTCTCAGCAACAGAAGCCAGATCCCAAAAAAGTTTACCATTTTGACCAAAGCTTCAACCCACAAGGAGCCATGGATGTTATGAAAGCGGAGAGGAGAGTTCCTCCACCGTTCCCTAATGCCCCTGAATACGTGAACCAACCTGGGAAGACGTTGCCAAAGGAACTTGTGAGCCCGAGAGGCTACCGAGGCTATCCACCAATGGAACAGATGTTTTCATTTGCTCAGACTGCAGTCACCGATGACGCCATCAATCAACAGCTCTCGGTCCAGCCCCAGCGCTCCAGGCCGGGCTTTCTGAGGCGCGCTGACTCTCTGGTAAGTTCGACTGAGATGGCGCTGTTCCGCAGAGTAGCTGAAAGCCAAGAACTGCAGCTGGCGGAGCACTACAACAGGTCTCAACAGAGCATGCTCGATCAACAGAACAGCTTGGCTACCATCACTGACGCCCAATTCCATAAGAGGAACGGTAGGTATGACGAAGACTACTCGTCTTATCAAGAACCCAAAAAGCCCATCATGGGTTACCCCACCAAGAGTCTGACGCAACGTCGCCCCCTGTCTGCACGGAGCTACAGCACAGAGACATATGGGGCATCTCAGGCAAGGCCAGTGTCTGCCCGACCCACCATGGCTGCGCTGCTGGAGAAATTGCCTTCAGATTACAATCTTAGTACGTGCACTGAGAAGAGCCCTGAAACTGACATGAAGATGAGACATCCTCAGAAACAAGAGGACCCCACCTCCAAAATGCCAGTAGATTGGAGACAGCAGCTGCTTAGACATATTGAAGCAAAGAGGCTAGACCGGAGCGCTGTCCTTAAGCACAACACAGTAAACTTCGGCATGCTGTACTCTGGAGGCTATGCTGCACCGCATGCCAGCAGAAGCATGACAATAAACTTTTACAATAACACAAAGCATGAAAACCAAACAACTCAGTGGCTACCTCTACCAAATACACCTTCACAACAGAGCAATATTTTAGATAATGGACAAGAGGTGGTTTCCCCAAGTAGCCAGTGGGCCCCGTATTCACTGGGAAGAAGAGACGTGCCACCAGAGAACATGAATGTCATCAAAAAGCCTGGCGTTCACAATCCCCATCAACAACAGACTATGATGATAACCTCAGCCAACCCTCCCCACCGGACGGCCCGCGACCAGCAGTATGAGGGGGCCATCAACAAGGTGTCCATCCAGCAGTACCAGTCGCCTCTGCCCATGCCCATCACCACCACCAGCCCCCGGCCTCAGAGCGCCCGCTGCTTCATCCAGACTAAAGGCCAGAAGAGTATGGACGGCTTTCCAGAGCAGCTCTGTGTGAGAATAGAGAAGAACCCTGGCCTTGGTTTCAGCATCTCAGGGGGAATCAGTGGACAGGGGAACCCCTTCAAGCCCTCGGACATGGGTATCTTTGTTACTAGGGTACAGCCTGATGGACCTGCCTCCAACGTTCTTCGACCAGGGGACAAAATTCTGAAGGCCAACGGACATAGTTTCTTACACATGGAGCATGAAACTGCAGTGTCTCTTCTGAAGAATTTCCCGAAAACTGTGGACTTGGTAATCTTAAGGGAGAGcacaacataaatatttttatagcttAAAGACTTCTCACCCAGATGGAACACAGGAACTTGTACATCTTCTTTTTATCTAGGAACAATTTTGCCAATTGCTGGACCAATGGCAAATTCCAGTGCCAAATGTACACTAGAGGACATATATAATAACGTTACATATGGCTTACACATTCTACACGAACATACATTGGTTGAAATCTTTGGTTGATGTTGCTGATATTCTTCTTTATCTCAGCCTGTGGCTGTAAGTGGGTGCATTTTTTCCTGCTTATTTATATGGCGTATTATTTTGTACCTATTTTTCCTAGCAGCTTTTCGGTTTAATCTCGGAGCATGAAAGCACATCTGCTTTTAAGGACATTTACCCACCATAACACTGCCTCAACTTTGTAAATGCcttgtgtaaatatatacatttacaactCAAATGTGATAAGAGCGTAGAATGTGAATGAAAGACACATTGATGATTTTCTAACACATCAATGAGTTTTTGTAACAACTTAGAAGAGACATCTTTCTCACAAAAACGACAATTTAGGGAAATCGAAAAGTCCCCTTTTAATCTTGATAGATCCTAACCTTCTGTATTTGCACAAATCAAATGACAGAAATGAATCCCTAAGCAATATTTCTTCCATTTGTGTGGCTTTCCTGCAGCACCCTCTATTGGTATTCATGGATTTTCCCTAGCCCTGATCAGGGTGGGTTTTGTTCAGTTGCTAAGTAATGTGAATGTacatttccatgtttttttctttttttgttttttcgttTCCGTTTTTTAATTCCCACGTACCTTTGTTGGCTGCCAGGAAAATTCATACACACGTGGCAGTTTATTGGCAACGCGGTTTTCTATATAAACATGTACTTTCATATCGCGTACTACGGTTTaagtgaggaaaaaaagggcaaaaaaagcttaattcaAGTTGCTTTGTTGTTGTTACGCTGCtttaaggtttttaaatatttttttaacaaaataaaggGAATTCCTGTCATAATAAAACGGACTAGATACAGTGTACACATGTAAGGCTTTACTGATTAGAGCATGCTTTCACtcttaaacttgttttattatgaTGCTTATTAGGGGTCAATGTGTTTTGGACAAAGCATTTTTACATAACCATTGTTTTACATCTCTTttggccttttttattttttttccttttttatttatttatttatttatttttaaatccgTCATTGTGACAAACAGTGCCATAATAtccctaaaaaaaaatctaaaacaaaccCTGGGCATGTTTCaaatgttgctaaaaatgtagcatttagAAGGAGTTATGAGCCGAAATGCATTCAGAAAGACCCCGACACAACACCCACTGCATTTAGCTTCAGAGAAATATCgttgattattaaataaagattattatggatgatgcaattaattgttcaaATACTATTGTGAAAGAACATTtgataatgattatttttactaaatgttttcaaataatggtttctaatatattgatataattagCTATGCTCAAATTGTTAAATTTTATAAAGAACAAAACCAATGTATGGACAGAGAGTTAGATTGCGAGGGAAGGAAACACTAGAAACAAATATGTACAATTCTTTCTAAAGTAATTGTGAATTTGTgtcataaacatatatatgtatatgaatatacaaatggtcatttttgtatgtgtttaaAGACCTATTGAATATAAAAGGTAATATATGGTACTATTCAGTCTAATTGCAGTATTGATGTAAATAACTATGAATggagacatttaaataatttattccaATAGATTGTGAATGTACTTAAAGCTTTCTGCAGTATTAAGACTTACTGAACTTGAATGCCGtttcatttttgtgcaaaaagtaATTATATCTAGAAGAAATTATTCAATTTAGTTCAAAAGAATTAGTGACAATTTATCATatcatttatttgcacatgcaAGTTTACTCCTTccaatttttttctgtattaccGCAAATATGTAATCGATGACATATATTCTGTGTCTAGAATGCATTTTGCAGAtgatatatgtacatatttaaaatcaattttagttaaaaaaaattaaaatgacaaacctGTATAAAAAGGAGAAGAAAGTCCAATGCTGTTCAGCAAATATTGGAGCCATTTTCGGCTTTGGAGtacagatttttttcagtatctAAGAGGTGTTTTGAATAATGTATCTTTAttgtacaaataataaaaatgtcactatTGTTA

Function

GO: NA

KEGG:

id description
K24055 LRRC7; leucine-rich repeat-containing protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66938 lncRNA downstream 4162 13981229 ~ 13981885 (-) True G45225
TU66908 lncRNA downstream 13953 13911684 ~ 13972094 (-) False G45206
TU66907 lncRNA downstream 13953 13953479 ~ 13972094 (-) False G45206
TU66905 lncRNA downstream 13953 13968313 ~ 13972094 (-) True G45206
TU66895 lncRNA downstream 124602 13861235 ~ 13861445 (-) True G45198
TU67006 lncRNA upstream 171203 14211366 ~ 14212986 (-) True G45270
TU67008 lncRNA upstream 174475 14214638 ~ 14216276 (-) True G45271
XR_006251154.1 lncRNA upstream 223626 14263789 ~ 14279029 (-) False LOC122346673
XR_006251155.1 lncRNA upstream 223626 14263789 ~ 14279029 (-) True LOC122346673
TU67011 lncRNA upstream 223704 14263867 ~ 14279026 (-) False LOC122346673
XM_043241824.1 mRNA downstream 200144 13722309 ~ 13785903 (-) False pex5la
XM_043241826.1 mRNA downstream 200146 13722309 ~ 13785901 (-) False pex5la
XM_043241825.1 mRNA downstream 200146 13722309 ~ 13785901 (-) False pex5la
XM_043241823.1 mRNA downstream 200146 13722309 ~ 13785901 (-) True pex5la
XM_043241827.1 mRNA downstream 200147 13722309 ~ 13785900 (-) False pex5la
XM_043241204.1 mRNA upstream 86411 14126574 ~ 14128317 (-) True cldn33b
XM_043242836.1 mRNA upstream 139709 14179872 ~ 14190329 (-) True lurap1
XM_043242907.1 mRNA upstream 157529 14197692 ~ 14200743 (-) True ttc4
XM_043241459.1 mRNA upstream 245334 14285497 ~ 14402960 (-) True pde4ba
XM_043241460.1 mRNA upstream 245334 14285497 ~ 14363385 (-) False pde4ba
TU66636 other downstream 304773 13668528 ~ 13681274 (-) False tmem131
unassigned_transcript_1263 other downstream 518108 13467868 ~ 13467939 (-) True trnaa-cgc_55
unassigned_transcript_1262 other downstream 518482 13467494 ~ 13467565 (-) True trnaa-ugc_115
unassigned_transcript_1261 other downstream 518821 13467155 ~ 13467226 (-) True trnaa-ugc_114
unassigned_transcript_1260 other downstream 518990 13466986 ~ 13467057 (-) True trnaa-cgc_54
TU66983 other upstream 120312 14160475 ~ 14193166 (-) True G45257
TU67455 other upstream 1288804 15328967 ~ 15330817 (-) False LOC122347580
TU67521 other upstream 1563747 15603910 ~ 15605470 (-) True G45606
TU67688 other upstream 2018805 16058968 ~ 16059767 (-) True G45730
TU67689 other upstream 2019730 16059893 ~ 16060466 (-) True G45731

Expression Profile