RNA id: XM_043242324.1


Basic Information

Item Value
RNA id XM_043242324.1
length 2475
RNA type mRNA
GC content 0.46
exon number 7
gene id tatdn2
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19786424 ~ 19791450 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGTTGGCAAGAGAGAACGCGTCGCTAATTACATACGCATGCGGTCCACCTGAGCTTTCTTCATCCGTATAGGCCTTAAGGATTGTAAGATTATCTTTGTCGTTGCTTGTACGATGAACCGCAAAAGGGAAAAGGTTAAGTTTACATGGCTGGATAAAGCCAAGGATTCTCCCAGAAAACTCATGAAGAACAGTGTGGGTGTGGCACAGCCAACATGCTGGGATGGAGATGATCAGGACGGTGGTATAAGAGAGGTTTGCTCTCCTGGCCTGAACACGTCTACGGGCTCAGTTGAATTGAGCGACATGGAGAACATGTGTCTCAGCACCCCACTTAGTACACCCAAAGCACGCTTAAAACTGACTGGACGCCACAGAGcactgttgaaaaaaaacagtccTGGTGCGGACACTGTTTCAGGACAGTCCTCTGTTGGCCCTTCACCACCCTCTGCTGGAAAGAAATGCAGGAGTCCAGAAGAAGGGCAGAAAGTCATTCTCCTCAAAGCGCTAAGTGATGCAATGGGGAATGCAAACAAAACGTCATCAGTTGGTGGGCCTAAAAGTCCTTCTGCAAAGAAAACCCCAGACATGCTTAAAAAGGCAATTGAGGAGAAAAGCAGATCTGAACTTGACTGCTGCTCATTCAGTGGGAAGATTGAACGACTGAGCGCCGCTACAGATGACGAGCCTCTCTCGCTGGACTTCATAGACACAGAAGATGATGGGACAGAAATAATGCTGGATACCAGGAGTGTGATTCTAAAGCGACCAGAATCGCCGGACTGGTCAGATGTTGAGGACTCCGAGCAGGTGGAAGTCTTCTCACAGGATGAGTCTTTCGAAACAAAGGGGCGTCAAACAGCTGTGCTTAAAAGGGATTGTGAGTTTGTGGAATATAATAACACTCTTCCAGCTTTATGCCACCCTTACTCTTTATCATCAGCTTTAGAACCAGAAGTGCATAATAGTTCCCCAACCGTGGAGCTTTTGTCAGAGCATTCAGCTCAGAATACAGCCTCTGCCCTGGAGCCCCCTAAGAGCTGCACAGTGAGGCGGTCCCTCAAATTACAGGAGTCTGTCATCAGCTCTTCTCCGCTGGTCGACGTTTTCTCCGGTCTCAGAACATTTACATCCTCCCCATATACACCCGGTTACTGGAATTACTCGCATCTTACTCCACGCAGGACTTCAGAATCAAATATTTATGCGTCTTCACCGATGCTCATCGCTGATGACGTTGCCACTCGCAGGATGTCTCTTGGTTCGGAGCCTCTCTGGCTGTCAGATTTGAACTATTCACGAGCGGATTCCGCAGGATTCATTGACACGCACTGTCACCTTGATATGCTCTATGGGAAGTTGAGTTTTCAGGGAAGTTTCCAAAGGTTTCAGAGAATGTACGCTAGTACTTTCCCAAAGGAGTTTAAGGGCTGCATCGCGGACTTCTGCAACCCACGAATCACTGAGAAAGAGGCTATCTGGCAAGGGCTGCTAGGAGAGGAGAAAGTATGGGGAGCCTTTGGTTGCCACCCGCATTTTGCCAAGGAGTATAACCACGTTTATGAGCAAAGCATCATGAGTGCTATGCGTCACCCTAAGGCCATTGCATTTGGAGAGATTGGTTTGGATTACTCGTATAAGAATTCTACCGAATCGTGGAAGCAGAAGGAGGTGTTTGAAAGGCAGTTGCAGTTGGCCGTCTCTCTCCGGAAGCCTCTTGTCATACATTGTCGTGATGCGGATGATGATGTGCTGAAAATTATGAAGAAGTGTGTCCCCTGGGATTACAAAATACACAGACACTGTTTTACCAACAGCTATTCTGTGATCGAGCCGTTCTTGAGTGAATTCTCTAACCTGTGTGTGGGTTTCACTGGACTGGTGACGTATCATCACGCTGCAGAGGCTCGAGACTCTGTGAGGAAAATCCCACTCAACAGAATCTTACTGGAGACGGATGCACCATATTTCCTACCCAGACAGGTGCCAAAGTCCACATGCAGGTTTGCTCATCCTGGTATGGGCATACACACGCTGCATGAGATTAGTCTGCTGAAGGAAGAGAGCCTAACCACAGTACTGCAAACAGTCCGGCAAAACACCAGACATGTATACGGTCTGTGATGAGCAACTGAAGTCCTTGCCATCTTAGTCCAGCTATCATTTAGCTTTGTCTTGCTAAAAAGGTTAACATGAGTGTGTTCAAATAAGTGTATCAGCATTAATGCTTAAGTTTTGTAAGTGTTGTAGGGAATGTCacatctgttaaaaatgttaaaataattttaatatctcttcggttttgttttaaaatggttcTTGTTCTCAGGATTCTTTTGTCGTGTATCTGCATGCATTTTTAGTTATGTATGCTTGTAAGACATAAGTGACATAAAATGCTGGCTTGTGTCTGTTAGAATAAGTCATTTTTTCCTTACACAATCaatgtttatacaaaaataaaatgtacaca

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251216.1 lncRNA downstream 179368 19606362 ~ 19607056 (-) True LOC122347383
TU68953 lncRNA downstream 388694 19393477 ~ 19397730 (-) True G46540
TU68955 lncRNA downstream 388694 19393477 ~ 19397730 (-) False G46540
TU68954 lncRNA downstream 389019 19393477 ~ 19397405 (-) False G46540
TU68898 lncRNA downstream 543613 19212639 ~ 19242811 (-) True G46509
TU69118 lncRNA upstream 344 19791642 ~ 19792328 (-) True G46658
TU69107 lncRNA upstream 9945 19801243 ~ 19802266 (-) True G46647
TU69142 lncRNA upstream 42772 19834070 ~ 19838047 (-) True G46673
TU69300 lncRNA upstream 50181 19841479 ~ 19842967 (-) False tomm6
TU69298 lncRNA upstream 50543 19841841 ~ 19842967 (-) True tomm6
XM_043242334.1 mRNA downstream 1818 19780907 ~ 19784606 (-) True ccdc174
XM_043242339.1 mRNA downstream 5669 19776312 ~ 19780755 (-) True si:dkey-28n18.9
XM_043242315.1 mRNA downstream 38973 19740237 ~ 19747451 (-) True ttll3
XM_043242563.1 mRNA downstream 49927 19677759 ~ 19736497 (-) True col7a1
XM_043242349.1 mRNA upstream 1452 19792750 ~ 19794626 (-) True vhl
XM_043242335.1 mRNA upstream 3805 19795103 ~ 19800569 (-) True crbn
XM_043242336.1 mRNA upstream 3805 19795103 ~ 19800555 (-) False crbn
XM_043242355.1 mRNA upstream 50999 19842297 ~ 19842994 (-) False tomm6
XM_043242352.1 mRNA upstream 54052 19845350 ~ 19847432 (-) False tspo
unassigned_transcript_1266 other downstream 119918 19666434 ~ 19666506 (-) True trnaf-gaa
TU68985 other downstream 230493 19553319 ~ 19555931 (-) False tsfm
TU68987 other downstream 230493 19553319 ~ 19555931 (-) False tsfm
XR_006251201.1 other downstream 636694 19115061 ~ 19149730 (-) False vdrb
TU68851 other downstream 730293 19055146 ~ 19056131 (-) True G46478
TU69304 other upstream 51746 19843044 ~ 19847398 (-) True tspo
XR_006251194.1 other upstream 305091 20096389 ~ 20102458 (-) False srsf3a
TU69405 other upstream 370142 20161440 ~ 20166279 (-) True G46840
TU69571 other upstream 737881 20529179 ~ 20531834 (-) True G46926
XR_006251209.1 other upstream 2948674 22739972 ~ 22750947 (-) False tardbpb

Expression Profile