RNA id: XM_043242332.1


Basic Information

Item Value
RNA id XM_043242332.1
length 3297
RNA type mRNA
GC content 0.43
exon number 10
gene id p4htmb
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19928355 ~ 19934425 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGAGACGAACAAGTGCGTTGGAGATGCGGCAGTTGTCAGGGGAATGGCGTCCCTCAAAAGTATAGTCAGCTGCGGATTCACTTCGAGATGTACAACTAAGGAAGCTGGCAGATAAATTCTAATCATTACATgcactgctaaaaaaaactcTTCGCAAGGATTTTAAAGAGAATGAATTTCAAAATGGTGCGTTGGCGCAACCGCCCGCAGGATACCAGAAGCTGCGCAGTTGCTATAATCACGCGTCTCGATGTAAACAAGAGAGGGAATGTTGACAACTGGAAGTGCTGAGTAAGCCAGAGAGTGTCATGCTACCACAAGCCGGAGATCGATAAAAACCTCGTCTGCCAAAATGATGGAAGCCCAGGACATTATTGAGGAGGATGACACCGCAGCATCagcaccatcatcatcatcagcgccGCCACCGCGAGCTCTGCCCCGTCAGCGCGTTTCTCTGCAGAAGAGCAGCGTGTGTTCTCGCTCCTACTTTATGGTGGTGATTTTTTTCCACGTTTATATAATCAATGTCATTGCACTTCTGCTCTACGTTCATTACAATAACGGATCTAACGCGATAACGGCAAACCGGGATTTTACAAGGAGAGATAACAGTCATAAAGTTACCGGAGCATCTGACCCGCAGCCCCCTGCAGACTCGGGCTTCCCTCGAAATATGTATCTTCCTCGCATTGAAGGAATACGGgtggGCCATGTCCAGAAAGTGTCACTGGTGCCAGGGAAAGTCCATGAGATGAAGACACTCAGTCTAAAGCCCCTTCTGTTTGAGATCCCTGGGTTTCTGTCAGAGGAGGAGTGTGGTGTAGTTGTGCGTCTGGCTCAGCTGAAGGGTTTGATGGAGAGTCAGGTTATGGTCCCTGAAGGTCAAGAGGAACTTAATCAGCAGCTTAACCTCAGTCCTGAGGAAATCTTCAATTTCCTTGACCTCAATCAAGATGGCCAGCTGCAACCGCATGAGATTTTGACACATTCTCGAGTGAGAGATGGAATCTGGTTAACTTCTGAAAACCTTAAGGAAATCTATGATGGCCTAAAGGTTGATCAGGATGGAGATGGTCTTTTAAATTTAGAGGAGTTTAGGCATCTGAAAAGTGATGCCTTTCAGCGTTTTTTGCTTCAGCGTGGGGTGGAGAGGAGTCAGCTGGTGAGGAACAGCAGACACACCTGGCTCTACCAGGGTCAGGGAGCACATCAGGTTCTTCAGGACCTCCGCAAAAGAGTCACTCGTTTAACGCGACTACCATCCTCACTGGTGGAGTTAAGTGAACCTCTACAAGTGGTGCGTTATGAGCAGGGTGGCCATTACCACGCTCATCATGACAGTGGGCCAGTGTACCCTGAAACAGCTTGCACACACACTCGCCTCGCTGCCAATACCACCTCCCCATTCCAGACGTCCTGCAGGTACATCACAGTTCTGTTTTACCTTAATAATGTAGAAGAAGGGGGCGAGACCACCTTTCCAGTGGCAGATAATAGGACTTACGAAGAAGCGTCACTGATACAGAATGATGTGGATCTGTTGGACACCAGGAAACATTGTGATAAAGGCAACCTGAGAGTGAAGCCCATTAAAGGGACGGCAGTTTTCTGGTACAACTATCTATCTGATGGTAGAGGTTGGGTTGGTGAACAGGACGAGTACTCTCTTCATGGTGGCTGTGTGGTGACACGTGGGACTAAGTGGGTTGCCAATAATTGGATCAATGTCGATCCAGACTACCAGCGGCAGGCACGCTACCAACAGTTCGTTTCTCAACAACAAGAGACGCAAGAGCAAGAAGAACTCATGTCAGAACTGAACTCAGACCAGCACATAGAAAGACACCAAGAcctataaacacatacatataaatccAGGTACAACAATGCACATATTTACACATTCACTTCTGTGTTACAATCTATGTATAGTCATTCACTTCCTCCTTCACACACGCATTCAGGCACAGTTCATTGCCTCTGCATCACTCATACACCCTGAAGCACTGACCTCGtaccaacaaacaaaacaaacaaaagcaccCCCTCCCCTTTGTACTTTATGTTTGGTTTGCTCTTCCCTAAATACAGTTGCACACTATAGAAATGTAGCCCTACCAACATTTCCTCATATTCAGAATTGAATGAGCTTTACTCAATCTCAGCGGTCCCAGTGTTGAGGCTGGAACTTTTGTTGGGTTGGATTCAGGGATAAACAGCCTGGGATTTATGCAATTGTGAAAGACAATGCTACTGTTCCTAATGTAGATATTTGAtggcattattatttattttttcatgggAATGCAGCCATATTCAGCGACTTTGTTTACACACAGAAAGACACTCTACTGTACCTTCCAAAGGCCGTACACACCGCAGCTAAATGTTAATGCATCGATAGTAAATAGTGCATACGAGATTTGTGGCTCTTTACTCTATGTGTTTTAACTTGCGATTTCGGTGACATGTAGTAAATAAACTGCTGTCAGTAAGGGCTGCATGACTAATCGGAAAAAAAATCACGAACATGATTCATACATAAATGCGATCTTATTTTGAAATGGCGGCAACACATTCCATGTCCTGTCTGAAAGGCACATAATGTGGACGGTGCACAGATGATCAACACCACTAATCTCTACAATCATCTCAAGCGTCACCACAAAATAGGAGAGGTTCTTGagtgcaaaatatttttgttgaaaaatttGAATCGTGTATGAAAATTATGATCTTAATTCCCATTGAGAAAAATCGTGATTCACATTTTAGCAAGAATTGTGCAGCCCGACTGTCAGTGTACAAGCAAACTTCACAATTGCTGGAGGATGTAGTGTGTACTGGCCAAAGAGTgtggaaaaaatgtatgttattgcTTTCTACTGAAGTGACATTTACACTGACATCTAAATCACATAACACTTAAGGAAAGTTATCTGCAGGGACACAGTCAGCATTGACTAGTTATGTCAATGGACTACAGGTTAGTTTAATTGtaactattaaaaattattaagattttaacCTATGTAACATCTAGTCAGCCTCCATCTCTGCCAGGATGTTTCTTACACTTATTTCCTCTCAGATGTTCCTGAAAAGAAGCATGTAAAACTTGCACAATCTTGTATACTTTGTttggatttaatttattttgtaatgttttttctttgtcaatTGCAGTGCATCCAAAGACTTGACTGAagttaacttattttatttatttgttggattgttgttaaaatgcacagaatcactttttgtcaaataaattaaaccaaCCAATCATA

Function

GO: NA

KEGG:

id description
K06711 PH-4; hypoxia-inducible factor prolyl 4-hydroxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69310 lncRNA downstream 47767 19880238 ~ 19880588 (-) False LOC122347207
XR_006251200.1 lncRNA downstream 47773 19877312 ~ 19880582 (-) False LOC122347207
TU69309 lncRNA downstream 49678 19877328 ~ 19878677 (-) True LOC122347207
TU69300 lncRNA downstream 85388 19841479 ~ 19842967 (-) False tomm6
TU69340 lncRNA upstream 33821 19968246 ~ 19968460 (-) True G46803
TU69356 lncRNA upstream 64207 19998632 ~ 20000625 (-) True mustn1a
TU69354 lncRNA upstream 120441 20054866 ~ 20115259 (-) True G46816
TU69358 lncRNA upstream 166221 20100646 ~ 20102453 (-) False srsf3a
TU69397 lncRNA upstream 193523 20127948 ~ 20129839 (-) True G46836
XM_043242327.1 mRNA downstream 7077 19918053 ~ 19921278 (-) True kbtbd12
XM_043242344.1 mRNA downstream 14513 19910994 ~ 19913842 (-) True c6h1orf159
XM_043242345.1 mRNA downstream 14530 19910994 ~ 19913825 (-) False c6h1orf159
XM_043242341.1 mRNA downstream 20287 19905851 ~ 19908068 (-) False LOC122347195
XM_043242340.1 mRNA downstream 20290 19905851 ~ 19908065 (-) True LOC122347195
XM_043242357.1 mRNA upstream 14887 19949312 ~ 19959657 (-) True LOC122347206
XM_043242356.1 mRNA upstream 26771 19961196 ~ 19964821 (-) True arpc4
XM_043242637.1 mRNA upstream 30978 19965403 ~ 19966424 (-) True LOC122347402
XM_043242891.1 mRNA upstream 54494 19988919 ~ 19994672 (-) True eefsec
XM_043241479.1 mRNA upstream 64384 19998809 ~ 20000638 (-) False mustn1a
TU69304 other downstream 80957 19843044 ~ 19847398 (-) True tspo
unassigned_transcript_1266 other downstream 261849 19666434 ~ 19666506 (-) True trnaf-gaa
TU68985 other downstream 372424 19553319 ~ 19555931 (-) False tsfm
TU68987 other downstream 372424 19553319 ~ 19555931 (-) False tsfm
XR_006251201.1 other downstream 778625 19115061 ~ 19149730 (-) False vdrb
XR_006251194.1 other upstream 161964 20096389 ~ 20102458 (-) False srsf3a
TU69405 other upstream 227015 20161440 ~ 20166279 (-) True G46840
TU69571 other upstream 594754 20529179 ~ 20531834 (-) True G46926
XR_006251209.1 other upstream 2805547 22739972 ~ 22750947 (-) False tardbpb
XR_006251207.1 other upstream 2805547 22739972 ~ 22750947 (-) False tardbpb

Expression Profile