RNA id: XM_043242333.1


Basic Information

Item Value
RNA id XM_043242333.1
length 1953
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC122347189
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19914974 ~ 19917755 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGAAGCCCAATGTCTGGAATATAAAGGAGATGTTGAATATCCCTGCAACGTCTGGAGGGATAAAAACTGGTAAGGGTCCTGGAACCAGTGACTACTCCAGCCTGAGTGACTCCCAGTTTCTCTTGGGCTCTCAAATGTGGCCTGACAATTCACAAGGGTTTACTCAGGAGATGAGTGGACAGAGCAAAGGTTCTCAGCATACCTCACAGGAAATGAAGGAAATTATGATGTCCAGCAGCTATAGCTCTAAGCCGCTGTTGTTTGGTGGTGATGGCAAAATCTCAAACTTCACCAGTAGCAAATATGTTGGCATGTTAGACAAAtttgaggaggagaagaagacccaagaaaaatatgaaagggAAATTCTCACTCATGGAATTCTACAACTGCAGGAATCTCTGGAAAATACCAGAGAGACTTTGTTAAATCGTATTGATGGAAGTAACGACATAACCAAAGTTGTAATGGAAAAAATTGGacactttttcaaaaCAGTTGAATGTTATTTAAACAGTGTGAAAGAAGGTATAACATATCAGTTTGAGACTCTGCAGAGCCGAACACAAATAGATATGGGAGACAGGGATGCCAAGtgCAGTCTGGCTGCAGAAGAGTTAAGCTCAGGCATGCTTAACCTCCAACAGGATCTGGAACATCTGAAAGCAGAGCAGAGCAAAGAGCAGGGCATGCTGGGAAAAATTCTGTCTCAGCTTAGCAATTTGATTTCTATTCACAAGCCGATGACAGGACCTGGCTCTGCTAGAATGATTGACAGTGAGGTTCAGACATCACCCAGTTTATTACAGAGGTTCTGTGTCATATTAGCTGAAAAAGAACACGAGAGCAAGATGATACGCAACAGGCCTGTCATTTATTCAGGAAAAGCAACAGAGCAGAACCAGTGTCCGCTTACAACACAGAAGACACGAAACAGAAATGCACATGCTCTGCCTGAAGAAAGACAGCAGACAGTAGTCACAGAGGAGGTTTCCTTGAATGCTTCACAGAGTTTATGGGGCACACAATTAGTCGAGAACATAGAGGACCATGGAGGACAGAAGCCTGAAAAACCACTGCAATTGAGAGAGAGCCGATTTGTCACTGATGCGATGCCACCACTAAAAATACCTAAGAGGCGCCAAAAACCACTGAATTATAGGGGGAAAAAGAGAGCCCTGGTTCTGCCCCAAAGACAgccggtaaaaaaaaaagaagcaagtTTTTCAAAGGGCAGCCAGCAGAATGAAGACCTTCAATTTGAACAAAAAGACAGAGAACCTTTGGCTTCTCTTTGTGGCAACTGGAACATGACCAAGTCTGTTGGAGGGGATCACCTAAAACTACAGCAGCAGGCGACTGTAGCACCAGTCAGTACGTGTGTAGCTGAACAACCACTAAACCCTTTCAGTTTGTGGTCTGAGGACACAGACAGCTCCCAACTGATGGTGGAAAATGAGGTTTTTGAACCAAAAGCTAGTGTCATAGAAGGAGAAGACGGCCTCTGGCAGCTTTTTGATTTCACTAATGACTCAGAATAAGATGCAGAATACTTCCATCCTGCATTCCTTCTGATTATACTTACATGTGCGAAATTATTTAGAGTATATcctatgttcattttttttttttaaatgttagaacTTGAAATTGCCTGTGAACATGCAAACCTTTCTTAGCTGTATACACATTATTCTTCTGTTGCTTTACCTTGTTGATTCTTTTTGAAGTATGGATTATAAAAGCATAAAGACAAATAGACAGACTTTGCTATATCTGAAAgaattttgttctgtttttctaaTGCCTTAGGCATGTCATATTCGagaaatttgtgttttttggtcTTACACACATTGTAGACAAATACTTAGTGTAACATCAATagatataaaatacttttaaaatatttttaaaactttgtttgACATAAATTTAGCCATGGTTAGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69154 lncRNA upstream 41439 19873092 ~ 19873535 (+) False slc6a11a
TU69145 lncRNA upstream 68426 19844815 ~ 19846548 (+) True LOC122347202
TU69100 lncRNA upstream 115462 19799012 ~ 19799512 (+) True G46640
TU69093 lncRNA upstream 124635 19789698 ~ 19790339 (+) True G46633
TU69092 lncRNA upstream 126124 19787935 ~ 19788850 (+) True G46632
TU69196 lncRNA downstream 31473 19949228 ~ 19949668 (+) True G46711
TU69164 lncRNA downstream 43454 19961209 ~ 19961985 (+) True G46690
TU69208 lncRNA downstream 47504 19965259 ~ 19966466 (+) True G46722
TU69212 lncRNA downstream 73916 19991671 ~ 19999698 (+) True G46726
TU69221 lncRNA downstream 88409 20006164 ~ 20006810 (+) False G46731
XM_043242308.1 mRNA upstream 15313 19889522 ~ 19899661 (+) False rereb
XM_043242307.1 mRNA upstream 15313 19889523 ~ 19899661 (+) True rereb
XM_043242337.1 mRNA upstream 26125 19883454 ~ 19888849 (+) True eno1b
XM_043242338.1 mRNA upstream 26125 19884585 ~ 19888849 (+) False eno1b
XM_043242328.1 mRNA upstream 41445 19866559 ~ 19873529 (+) True slc6a11a
XM_043242314.1 mRNA downstream 4769 19922524 ~ 19928344 (+) True slc26a6l
XM_043242636.1 mRNA downstream 48868 19966623 ~ 19972433 (+) True si:ch211-157b11.8
XM_043241365.1 mRNA downstream 59316 19977071 ~ 19982743 (+) True gata2b
XM_043241476.1 mRNA downstream 77280 19995035 ~ 19999128 (+) True ruvbl1
XM_043241478.1 mRNA downstream 87049 20004804 ~ 20005960 (+) True c6h1orf74
TU69089 other upstream 128677 19784177 ~ 19786297 (+) True ghrl
TU69007 other upstream 333150 19580489 ~ 19581824 (+) False itpr1a
TU69008 other upstream 333150 19581196 ~ 19581824 (+) False itpr1a
unassigned_transcript_1265 other upstream 762801 19152102 ~ 19152173 (+) True trnaq-uug_14
TU68431 other upstream 1326527 18577278 ~ 18588447 (+) False atp10a
TU69241 other downstream 169336 20087091 ~ 20095641 (+) True G46742
TU69535 other downstream 714241 20631996 ~ 20637951 (+) False LOC122346811
TU69537 other downstream 807972 20725727 ~ 20749398 (+) False LOC122347404
TU69951 other downstream 1857653 21775408 ~ 21777713 (+) True G47187
TU69952 other downstream 1858179 21775934 ~ 21777713 (+) False G47187

Expression Profile