RNA id: XM_043242334.1


Basic Information

Item Value
RNA id XM_043242334.1
length 1761
RNA type mRNA
GC content 0.43
exon number 11
gene id ccdc174
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19780907 ~ 19784606 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTCCGAGACAGTAGATGGCAGACTGCATTTGGCCTTTATAGAGATACACTGTGTAGCTTTCTGAACGTCAGTGCTAGCCTGTTTTACCTAAAAATCTACGGTTAATATGGATAAAAAGAAGAAACCATACAGTGTTACAGCGTCGTCACTGGTCGATTTGAAAGCGGAATTATATCGGAAACAGGAACAATTTAAGCACGACCGACTTGGCCAAGATGAAGGAGCCTCACAGAAGtctaagacaaaaataaaaAAGCCCAATATCTGGAGCAAACAGAATGAAGGAGTCAGTGCACGAGCTGAGAGGGACGTTCAGCAGACGACAGAGGAAGAGAACACACTAGAAAAGTCCAGGCAAAAATTGGAGGAAAAGGCACGTCTGTATGAACAGATGACAAAAGGAGATTTCCCAGATGAGGAGACCGAAAGTCTTTTTCTGGTGGATTTCACCCAAAAGATCATCAACCAGAGGAATGAACCACAGACACACAATGCAAATGTAGCAGGGGACCGAGATGGAGAGGACTCTGATGTAAAAATCCCGGTTCCACCTCCACAGAACGCAAATGAAGAATGGGTGGACTATGTTGATGCATTAGGACGTTCTCGAAGATGTCTGAGAAAAGACCTaccagattttcaaaaaatggaCGAGGAACTCCACAACAAGAGGGTGACGGGTGCTGACAGGACGCTGTTATCTGATGACATGAGGAGAGAAATGCAGAGAGAGCagtgggagagagaggaagaggagcagaTGAAGAAACCTGTTGGACCCATTCACTATGAAAATATCAGAGAACAAGAGGCCAGAGAGCTGGGTGTTGGGTATTTTGCTTTTGCCCAGGATGAGGACCAACgaagaaaacagagagaaactCTAGACATGCTGAGGGACCAGactACAGATCAGCGCCACAAACGTGAGCAACTGAAGGAGAAGCGGAAAGCCCTGCTTAAAGATCGGCTTGCTAAAGTAAGAATGAGGAGGATGAAGAAAAGCAAGTTGGAGCCAGGAGATGAAGAAGAGGCTGCTGCTGCTAATGCTGAGAATGATGAAGATGATAACGATGAAGGTTTGGTTGGACCTCCAGCCCCAATAGTGCGGAAAGTGGAAGTAGAGATTCAAGAGAGAAAAGACACCAAACCTGGTGTTCCACACGTAAGAGAGTGGGACAGAGGCAAAGAGTTCTCCTTGGGACAGTGGACCAATCGTCGTCGAGAAGAGCGAGACTCAGAGTTTGCTCCTCCTTCTGCTTATTACAGAGACGATACAAGATCTAGTCACAACAGAGCCACAGACAAAGGAAAACTTGCCTTCAAGTGGTCTGAATCCCCAAAACCCacaaacagagacacagagaacaTATCTGCCTCTAGTCAACCTTCTGACGTACCCACATATACATACCCACAACCTTCTCAACCACAGACTGCTCAAACACAGAGTCTGGACGAACTGTTATCATACTACAAACACTCCATGTAAAAGTGCAAGTCTGAATATCACTGGAAACTATGGGATTTGATCTTAAACCACAGTGGCAGTAAAACTATGTACTAAAATGTAACTGAATTGCAAAGTTAGAATAAAGAATTACAAGAATATTTAGATTAATATGCACTGTTTTATTCCATGTTATTCCAAATTCAACAGCATTCTTAAccataatttattacattttaaatagattgTAAAGAACAGAAGTCACTCTTGTCCataaaattatgttaattaaacaGTTTTCCTGTTCTAA

Function

GO: NA

KEGG:

id description
K25178 CCDC174; coiled-coil domain-containing protein 174

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251216.1 lncRNA downstream 173851 19606362 ~ 19607056 (-) True LOC122347383
TU68953 lncRNA downstream 383177 19393477 ~ 19397730 (-) True G46540
TU68955 lncRNA downstream 383177 19393477 ~ 19397730 (-) False G46540
TU68954 lncRNA downstream 383502 19393477 ~ 19397405 (-) False G46540
TU68898 lncRNA downstream 538096 19212639 ~ 19242811 (-) True G46509
TU69118 lncRNA upstream 7036 19791642 ~ 19792328 (-) True G46658
TU69107 lncRNA upstream 16637 19801243 ~ 19802266 (-) True G46647
TU69142 lncRNA upstream 49464 19834070 ~ 19838047 (-) True G46673
TU69300 lncRNA upstream 56873 19841479 ~ 19842967 (-) False tomm6
TU69298 lncRNA upstream 57235 19841841 ~ 19842967 (-) True tomm6
XM_043242339.1 mRNA downstream 152 19776312 ~ 19780755 (-) True si:dkey-28n18.9
XM_043242315.1 mRNA downstream 33456 19740237 ~ 19747451 (-) True ttll3
XM_043242565.1 mRNA downstream 44410 19677759 ~ 19736497 (-) False col7a1
XM_043242323.1 mRNA upstream 1818 19786424 ~ 19791450 (-) True tatdn2
XM_043242324.1 mRNA upstream 1818 19786424 ~ 19791298 (-) False tatdn2
XM_043242349.1 mRNA upstream 8144 19792750 ~ 19794626 (-) True vhl
XM_043242335.1 mRNA upstream 10497 19795103 ~ 19800569 (-) True crbn
XM_043242336.1 mRNA upstream 10497 19795103 ~ 19800555 (-) False crbn
unassigned_transcript_1266 other downstream 114401 19666434 ~ 19666506 (-) True trnaf-gaa
TU68985 other downstream 224976 19553319 ~ 19555931 (-) False tsfm
TU68987 other downstream 224976 19553319 ~ 19555931 (-) False tsfm
XR_006251201.1 other downstream 631177 19115061 ~ 19149730 (-) False vdrb
TU68851 other downstream 724776 19055146 ~ 19056131 (-) True G46478
TU69304 other upstream 58438 19843044 ~ 19847398 (-) True tspo
XR_006251194.1 other upstream 311783 20096389 ~ 20102458 (-) False srsf3a
TU69405 other upstream 376834 20161440 ~ 20166279 (-) True G46840
TU69571 other upstream 744573 20529179 ~ 20531834 (-) True G46926
XR_006251209.1 other upstream 2955366 22739972 ~ 22750947 (-) False tardbpb

Expression Profile