RNA id: XM_043242335.1


Basic Information

Item Value
RNA id XM_043242335.1
length 2570
RNA type mRNA
GC content 0.45
exon number 11
gene id crbn
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19795103 ~ 19800569 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTGTGTGTTTTCCCCCGCGTGTCTCTTCAAGGCAGTGCTGCGCTTGTTGAGAGCTGATTGTAAACACACGGCTATGGCTGCTGAGAGGGGCGGAGGCGACAACAACAACCTTAACGACGAAATGGGCAACCAACTACAACTCCTGCCAGaaaatgaagaggaagaagaggatgaCATGGAGACAGAGGATCGAGATGGTGAGGATGCAGAAAAGCCAAGTATTATAAACTTTGACACGAGTCTGCCAACTTCACACGCTTACCTGGGCTCAGACATGGAGGAGTTTCACGGCCGTACCCTGCATGATGAGGACAGTGTGCAGAATCTGCCGGTTCTTCCTCACGTCACACTCATTCTGATCCCAGGTCAGACGCTACCCTTGCAGCTTTTCCGACCACAGGAGGTCAGCATGTTCCGCAACCTCATAAGCCAGGACCGCACGTTTGCAGTGCTTGCACACAGTCCTGATGCGAGTGGAGCGGAGATAAAAGCAGAGTTTGGGACGACTGCGGAGATCTATGCTTTTCGTGAGGAACAGGAGTACGGCATAGAGACAGTTAAGATCAAAGCTGTTGGACGGCAGCGCTTCAGAGTGCATGAAATACGCACACAAGCAGACGGGATTCGTCAGGCAAAAGTACAGATTTTACCTGAGAGGATTCTGCCAGACCCTTTATGTGCGCTGCAGTTCCTGCCccgcttacacacacacacaccacagatcaAACACTCACAAACCACACCGCAGGACCGGTGCAGACAGACCTATAGACAGaagaagTTTCATTGTGCTAGTATGACCTCATGGCCTCCTTGGGTGTATGCCTTATATGACTCTAAAACTCTCATGAGCAGAGTAAAGAAACAGCTCCACGAATGGGATGAAAACCTCAAAGACGAGTCCCTGCCTACAAATCCCACAGATTTCTCATACAGGGTAGCCGCATGTCTACCAATAGATGATGCTCTGAGACTCCAGCTACTGAAGATCGGCAGTGCCATCCAGAGACTGCGTTGTGAGTTGGACATCATGGACAGGTGCACCTCTCTTTGCTGTAAACAGTGCCAGGATACAGAGATAACTAGCAAGAACGAGATCTTCAGCCTGTCTCTGTATGGGCCAATGGCAGCGTATGTGAATCCGCATGGCTATGTTCACGAGACACTTACAGTCTACAAGGCCAACAACCTCAACCTGATTGGACGACCTTCCACACTGCATAGTTGGTTTCCAGGGTATGCGTGGACAATTGCTCAGTGCAGAACCTGCGGCTCTCATATGGGCTGGAAGTTCTCAGCAGTAAAAAAGGATCTGAGTCCACCTCGGTTCTGGGGTTTGACTCGTTCTGCCCTGCTACCGACAATCCCACAGGGCGAGGAGGGTGTCGAGGGGTCACGCTTGCTGTGCCTGTAATGTGATCAGAGCATTACTTGTGACCTTTAACCCTTCTGCCCACAAGCATATGCTCTCCCAGGGGTCTCTTCTGTAACCCCAAAAACATAAGACCCCAAAACCTCACccggagagagtgagagaaagtgtgtttgtgagtttatATGTGTAGATGTGTGCATGAACagggagaggaaaagaaaaaggggACAGGGTAGCATACAGGAGTAGAAAGAACAACAGAATGCAAGTTGTTGCCTTCACACACCTTGTGCTGTGTAAATTACAGCCTGATACGTGCAATATCATACCAGATGGGCTCTTTAAGATATTACAGTCTGTTGTAATGCACTTAATTTTTTCGTTTAGCAGTCTTTTCGTCATTATTACTGCCTAGGTAACAGTTAAGCAAGATGTCATCTTGTTTGGATGTTTATGAGTATTGTGTTAAAATAGGGTCAAATCTCTAACACCAAAGTGTGATGATCTCATTTAGTCCGACAGAAAGTCTTTTCATGCCCACGTTTAGCAACATAATCAACACTCATGTAGAATACCTCAACCAGATAAACGCTCTTGGACATCTTTCTCAAATGAAGATCGAAACTGCTTGAATTGAATCATTCCCCATACCTTGTGTCCCATGTGCTTGTGTCGGGGTACATCTGGCACACAAATCCTGGCTAAAAGTGTCAGTTGGTGAATAATAAAGGAAATATCAGGGAGTTACCTTTTATGTAATTAAGACTCAATATCCAGAGCAGTTCTTAAAGGGTGTTTTGTATTTCTCAGTCTCACTGTTTTGCTTCgtcttttatatttgttttgtttggataCCGTTTAATTGAATGAAGATATGATGTATATGTGGAGTTGAGAGCCAAAAACGTGCATCCTGAATggaatagtttttttcccccgaAAAACTATAGTCTGCATTGAGAAACTTCCTAAAGTATAAAGATCCTGATCACGTGTTCATTAAATGAGTGCAGAATACACACTTTAAGCAGAAAATTGGCACACAATCATGCTCATTCTTCACTATCATTTACATAGCTgtaataagaaaacataaacGTGATACACGCTGACTTGCATATCTGTAATGATCAAGAGGTtaaatactgttcagtgctgATCAATTCTCGCCAATAAACTGCTTCTGAAATGTTG

Function

GO:

id name namespace
GO:0071600 otic vesicle morphogenesis biological_process
GO:0060173 limb development biological_process
GO:0016567 protein ubiquitination biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0031464 Cul4A-RING E3 ubiquitin ligase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004176 ATP-dependent peptidase activity molecular_function

KEGG:

id description
K11793 CRBN; cereblon

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69118 lncRNA downstream 2775 19791642 ~ 19792328 (-) True G46658
XR_006251216.1 lncRNA downstream 188047 19606362 ~ 19607056 (-) True LOC122347383
TU68953 lncRNA downstream 397373 19393477 ~ 19397730 (-) True G46540
TU69107 lncRNA upstream 674 19801243 ~ 19802266 (-) True G46647
TU69142 lncRNA upstream 33501 19834070 ~ 19838047 (-) True G46673
TU69300 lncRNA upstream 40910 19841479 ~ 19842967 (-) False tomm6
TU69298 lncRNA upstream 41272 19841841 ~ 19842967 (-) True tomm6
XR_006251200.1 lncRNA upstream 76743 19877312 ~ 19880582 (-) False LOC122347207
XM_043242349.1 mRNA downstream 477 19792750 ~ 19794626 (-) True vhl
XM_043242323.1 mRNA downstream 3653 19786424 ~ 19791450 (-) True tatdn2
XM_043242324.1 mRNA downstream 3805 19786424 ~ 19791298 (-) False tatdn2
XM_043242334.1 mRNA downstream 10497 19780907 ~ 19784606 (-) True ccdc174
XM_043242339.1 mRNA downstream 14348 19776312 ~ 19780755 (-) True si:dkey-28n18.9
XM_043242355.1 mRNA upstream 41728 19842297 ~ 19842994 (-) False tomm6
XM_043242352.1 mRNA upstream 44781 19845350 ~ 19847432 (-) False tspo
XM_043242350.1 mRNA upstream 73404 19873973 ~ 19875768 (-) True ppil1
XM_043242312.1 mRNA upstream 99103 19899672 ~ 19905235 (-) True LOC122347177
XM_043242341.1 mRNA upstream 105282 19905851 ~ 19908068 (-) False LOC122347195
unassigned_transcript_1266 other downstream 128597 19666434 ~ 19666506 (-) True trnaf-gaa
TU68985 other downstream 239172 19553319 ~ 19555931 (-) False tsfm
TU68987 other downstream 239172 19553319 ~ 19555931 (-) False tsfm
XR_006251201.1 other downstream 645373 19115061 ~ 19149730 (-) False vdrb
TU68851 other downstream 738972 19055146 ~ 19056131 (-) True G46478
TU69304 other upstream 42475 19843044 ~ 19847398 (-) True tspo
XR_006251194.1 other upstream 295820 20096389 ~ 20102458 (-) False srsf3a
TU69405 other upstream 360871 20161440 ~ 20166279 (-) True G46840
TU69571 other upstream 728610 20529179 ~ 20531834 (-) True G46926
XR_006251209.1 other upstream 2939403 22739972 ~ 22750947 (-) False tardbpb

Expression Profile