RNA id: XM_043242340.1


Basic Information

Item Value
RNA id XM_043242340.1
length 1480
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC122347195
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19905851 ~ 19908068 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTTTAACTCGTTTGAGTCACAGCTTAGAAGTATAATTCAAACTAGTGAAGAGCAGGGGAAGGCAGTTACACTTTACCAGAAGACCAAGACAGACAGGTTTGGGGAGAGACGACCATTCAAAGACCTGTTTTGGGaacttttcaaacttttcaGCCTTTATCTGAACCCATCtaaacaaagaagaagaaagcatctacaatataaaaaagtattctgTATTCCTCTTCTAagattttcttcTGTCCACACAAACAGGATGGAGGAACAGGAAGTATCTACAGCATCACGTACCAATTCAGTAAGGCACCAACACAAGACACTGGGCTCCGGTGACGACCAGGACGATGCCTGGGATGCCGGCCCGGAGTGTTCAATCTGCTTTTGTGCATACGACAACACCTTCAAGACACCGAAGCTTCTCACGTGTACCCATACCTTCTGTCTGGAATGTCTGTCTCGCTTTGTGACTATTTCACCAGAGCAGGACGGTACCCAGATCACCTGCCCTCTTTGTCGGCAGCCAACATCTGTACCTGAACACGGTCCTCCAGAGCTGGCCACCAGCCAGGAAGTTTTGGACCAACTTCCAAGCGACCTGCAACAAGTGGAGAACGTTTTTCTAGATGGAAAGAGACTGTGTTACTCGAACCCTATGATACCCAACTGCATCTGCATTGACATCGGGGAGCATAAACAAGAGGAGCCGCCGAGaacagaggagagaagagagggTTGTGGACACAGGCTGCTGAGATTCTTGGGTTTTTATGGAAACTGGAAAAGGCTTGTGGTCTTCATCATAGTGCTTATTGTGGTCTTATTCGTTATACTGTGGCCTCTCCAGTGCTTTATCATCTCAAACTCCATGTCACAATGCTTCGGAGAATCTCCAGCTACGGCCAGTGCTCCCAGACCTCCAGGGGGTAACTAAAACACACAGGTGGACACAATAAGGTTTTATTCAAGCCTGGAAACAGTTTCAGCTTCGTGAATTGCAAATAACTTTCAGGTTGTATGGACTTCAGTCTAAAAGCATGACTGATGAGCTAAAATCACAGCTATAACCTTTACAGCTTCATACAACAGCAAACCTGTATCGGTTAAAATTCGACTTTTTCATTTCAACTCAATATTTGTTGCATGAAATTTCATTGTCGTATCAGATACTTCCTAAATGccactgtaaatatttaaaattctctTCTGCGTTTAAAACAGATGAACAAAATAAGCACTAgagtaaaactttttaaacaccTTTTAACAGGATCCTGCTTGCCGGTTTGATTGCTTTGGCTGGAAAAGATCTTtgcacattttgtaaaatataaagccttcaatttattgtgtgtttatttgcaaaagtattcattaATTACGCATGTATATTAACAGAGTTTTcaaatttattgtattttcagaaaaaaaagtaaaatgtactgtaatcaaatgtttttttattaaaaatttctcaCTGTa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69310 lncRNA downstream 25263 19880238 ~ 19880588 (-) False LOC122347207
XR_006251200.1 lncRNA downstream 25269 19877312 ~ 19880582 (-) False LOC122347207
TU69309 lncRNA downstream 27174 19877328 ~ 19878677 (-) True LOC122347207
TU69300 lncRNA downstream 62884 19841479 ~ 19842967 (-) False tomm6
TU69340 lncRNA upstream 60181 19968246 ~ 19968460 (-) True G46803
TU69356 lncRNA upstream 90567 19998632 ~ 20000625 (-) True mustn1a
TU69354 lncRNA upstream 146801 20054866 ~ 20115259 (-) True G46816
TU69358 lncRNA upstream 192581 20100646 ~ 20102453 (-) False srsf3a
TU69397 lncRNA upstream 219883 20127948 ~ 20129839 (-) True G46836
XM_043242312.1 mRNA downstream 616 19899672 ~ 19905235 (-) True LOC122347177
XM_043242350.1 mRNA downstream 30083 19873973 ~ 19875768 (-) True ppil1
XM_043242352.1 mRNA downstream 58419 19845350 ~ 19847432 (-) False tspo
XM_043242355.1 mRNA downstream 62857 19842297 ~ 19842994 (-) False tomm6
XM_043242336.1 mRNA downstream 105296 19795103 ~ 19800555 (-) False crbn
XM_043242344.1 mRNA upstream 2929 19910994 ~ 19913842 (-) True c6h1orf159
XM_043242345.1 mRNA upstream 2929 19910994 ~ 19913825 (-) False c6h1orf159
XM_043242327.1 mRNA upstream 9988 19918053 ~ 19921278 (-) True kbtbd12
XM_043242332.1 mRNA upstream 20290 19928355 ~ 19934425 (-) True p4htmb
XM_043242357.1 mRNA upstream 41247 19949312 ~ 19959657 (-) True LOC122347206
TU69304 other downstream 58453 19843044 ~ 19847398 (-) True tspo
unassigned_transcript_1266 other downstream 239345 19666434 ~ 19666506 (-) True trnaf-gaa
TU68985 other downstream 349920 19553319 ~ 19555931 (-) False tsfm
TU68987 other downstream 349920 19553319 ~ 19555931 (-) False tsfm
XR_006251201.1 other downstream 756121 19115061 ~ 19149730 (-) False vdrb
XR_006251194.1 other upstream 188324 20096389 ~ 20102458 (-) False srsf3a
TU69405 other upstream 253375 20161440 ~ 20166279 (-) True G46840
TU69571 other upstream 621114 20529179 ~ 20531834 (-) True G46926
XR_006251209.1 other upstream 2831907 22739972 ~ 22750947 (-) False tardbpb
XR_006251207.1 other upstream 2831907 22739972 ~ 22750947 (-) False tardbpb

Expression Profile