RNA id: XM_043242344.1



Basic Information


Item Value
RNA id XM_043242344.1
length 1063
RNA type mRNA
GC content 0.39
exon number 9
gene id c6h1orf159
representative True

Chromosome Information


Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19910994 ~ 19913842 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CAGTGCGGTTTATTTTATTGATCAGGAAGTGAAGTACCGTTGAGAACAGATTTGTGACACATTAAAACTTGCGCTTAACAGGAGTAATCTCATCATGAGTAGAGTCTACTACATCCTCAGTGCTGCTCTTTTTGTGTTAGAAATTCCAGAGACCAAGGCACTGCTAGAAAACTCCAATGACTGTTGTGAAAGAATAAAGAGAATGAATGAAACCTGTGCGAATATTACACTCTGTGACTCTGGGCTCCTTCCAGTTCAGGAAAACAGTACAACATTTTGTGTGTCCTGTGACTCAACGGAGCAGGGGAATTCAACTTTACTTAACAATACAAAGACTAGTCACATTGTAGTACCTGTAATCACAGTGATTGGTGGTCCAGGGATAGCAGCTTCTGTCCTTCTAGGAACTCTACTGATCAGCCTGGGCCTCATCCTCTCAGTTGCATCTTTCTTTTACCTTAAGCGTTCCAACCGCCTCCCTGGTGTCTTCTACAGGCGCAATAAggCTTTTATATTCCAACCAAGTGAAACGGCTGTCATGATTCCTGAAGCTACATCTTCAGTTCGCAAGCCAAGATATGTGAGGAGGGAAAGGCCATCAGCAACATCAGCATCCAGCAGTGCTACTGTGGCCACAGGGGCAGTAACCAAGGTGTACAATGTGTGACCAGCCTCCAAGGGCCAGCTATGAGCCCCCTTTTAAAACACTAGTCTGTCCTATAGCACTGTTTTCTTATAGGATTTCcttttttggtgaaattttCCTTTGTAGGCTACATGAAGAACGATATGTCTTGATGTAGACTTTATCTTGGAAACCTTTTCTTTTCACGGAAGCcagttatttatttctatttatatatttttcacataatacgttgttcttttttttttttttttttaagagaccaGGTGTTGCACTACTAGAGTATTTTTGATTGTTAAGCTATAATTCAGTGTAGTAAGTTGTTTTTTCAATgaattttgtaatgtttatatttattaccagtatttttgtgtaatattgTACTTTTGAATCTTGTGACATTGAAACTAGGATCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU69310 lncRNA downstream 30406 19880238 ~ 19880588 (-) False LOC122347207
XR_006251200.1 lncRNA downstream 30412 19877312 ~ 19880582 (-) False LOC122347207
TU69309 lncRNA downstream 32317 19877328 ~ 19878677 (-) True LOC122347207
TU69300 lncRNA downstream 68027 19841479 ~ 19842967 (-) False tomm6
TU69340 lncRNA upstream 54404 19968246 ~ 19968460 (-) True G46803
TU69356 lncRNA upstream 84790 19998632 ~ 20000625 (-) True mustn1a
TU69354 lncRNA upstream 141024 20054866 ~ 20115259 (-) True G46816
TU69358 lncRNA upstream 186804 20100646 ~ 20102453 (-) False srsf3a
TU69397 lncRNA upstream 214106 20127948 ~ 20129839 (-) True G46836
XM_043242341.1 mRNA downstream 2926 19905851 ~ 19908068 (-) False LOC122347195
XM_043242340.1 mRNA downstream 2929 19905851 ~ 19908065 (-) True LOC122347195
XM_043242312.1 mRNA downstream 5759 19899672 ~ 19905235 (-) True LOC122347177
XM_043242350.1 mRNA downstream 35226 19873973 ~ 19875768 (-) True ppil1
XM_043242352.1 mRNA downstream 63562 19845350 ~ 19847432 (-) False tspo
XM_043242327.1 mRNA upstream 4211 19918053 ~ 19921278 (-) True kbtbd12
XM_043242332.1 mRNA upstream 14513 19928355 ~ 19934425 (-) True p4htmb
XM_043242357.1 mRNA upstream 35470 19949312 ~ 19959657 (-) True LOC122347206
XM_043242356.1 mRNA upstream 47354 19961196 ~ 19964821 (-) True arpc4
XM_043242637.1 mRNA upstream 51561 19965403 ~ 19966424 (-) True LOC122347402
TU69304 other downstream 63596 19843044 ~ 19847398 (-) True tspo
unassigned_transcript_1266 other downstream 244488 19666434 ~ 19666506 (-) True trnaf-gaa
TU68985 other downstream 355063 19553319 ~ 19555931 (-) False tsfm
TU68987 other downstream 355063 19553319 ~ 19555931 (-) False tsfm
XR_006251201.1 other downstream 761264 19115061 ~ 19149730 (-) False vdrb
XR_006251194.1 other upstream 182547 20096389 ~ 20102458 (-) False srsf3a
TU69405 other upstream 247598 20161440 ~ 20166279 (-) True G46840
TU69571 other upstream 615337 20529179 ~ 20531834 (-) True G46926
XR_006251209.1 other upstream 2826130 22739972 ~ 22750947 (-) False tardbpb
XR_006251207.1 other upstream 2826130 22739972 ~ 22750947 (-) False tardbpb

Expression Profile