Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_043242349.1 |
| length | 1047 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 3 |
| gene id | vhl |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_056704.1 |
| NCBI id | CM032073.1 |
| chromosome length | 27473687 |
| location | 19792750 ~ 19794626 (-) |
| genome version | ASM1883169v1_2021_tiger_barb_Genome |
| species | tiger barb (Puntius tetrazona) |
| id | name | namespace |
|---|---|---|
| GO:0030947 | regulation of vascular endothelial growth factor receptor signaling pathway | biological_process |
| GO:0045765 | regulation of angiogenesis | biological_process |
| GO:0030218 | erythrocyte differentiation | biological_process |
| GO:0016567 | protein ubiquitination | biological_process |
| GO:0005634 | nucleus | cellular_component |
| id | description |
|---|---|
| K03871 | VHL; von Hippel-Lindau disease tumor supressor |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU69118 | lncRNA | downstream | 422 | 19791642 ~ 19792328 (-) | True | G46658 |
| XR_006251216.1 | lncRNA | downstream | 185694 | 19606362 ~ 19607056 (-) | True | LOC122347383 |
| TU68953 | lncRNA | downstream | 395020 | 19393477 ~ 19397730 (-) | True | G46540 |
| TU68955 | lncRNA | downstream | 395020 | 19393477 ~ 19397730 (-) | False | G46540 |
| TU68954 | lncRNA | downstream | 395345 | 19393477 ~ 19397405 (-) | False | G46540 |
| TU69107 | lncRNA | upstream | 6617 | 19801243 ~ 19802266 (-) | True | G46647 |
| TU69142 | lncRNA | upstream | 39444 | 19834070 ~ 19838047 (-) | True | G46673 |
| TU69300 | lncRNA | upstream | 46853 | 19841479 ~ 19842967 (-) | False | tomm6 |
| TU69298 | lncRNA | upstream | 47215 | 19841841 ~ 19842967 (-) | True | tomm6 |
| XR_006251200.1 | lncRNA | upstream | 82686 | 19877312 ~ 19880582 (-) | False | LOC122347207 |
| XM_043242323.1 | mRNA | downstream | 1300 | 19786424 ~ 19791450 (-) | True | tatdn2 |
| XM_043242324.1 | mRNA | downstream | 1452 | 19786424 ~ 19791298 (-) | False | tatdn2 |
| XM_043242334.1 | mRNA | downstream | 8144 | 19780907 ~ 19784606 (-) | True | ccdc174 |
| XM_043242339.1 | mRNA | downstream | 11995 | 19776312 ~ 19780755 (-) | True | si:dkey-28n18.9 |
| XM_043242315.1 | mRNA | downstream | 45299 | 19740237 ~ 19747451 (-) | True | ttll3 |
| XM_043242335.1 | mRNA | upstream | 477 | 19795103 ~ 19800569 (-) | True | crbn |
| XM_043242336.1 | mRNA | upstream | 477 | 19795103 ~ 19800555 (-) | False | crbn |
| XM_043242355.1 | mRNA | upstream | 47671 | 19842297 ~ 19842994 (-) | False | tomm6 |
| XM_043242352.1 | mRNA | upstream | 50724 | 19845350 ~ 19847432 (-) | False | tspo |
| XM_043242350.1 | mRNA | upstream | 79347 | 19873973 ~ 19875768 (-) | True | ppil1 |
| unassigned_transcript_1266 | other | downstream | 126244 | 19666434 ~ 19666506 (-) | True | trnaf-gaa |
| TU68985 | other | downstream | 236819 | 19553319 ~ 19555931 (-) | False | tsfm |
| TU68987 | other | downstream | 236819 | 19553319 ~ 19555931 (-) | False | tsfm |
| XR_006251201.1 | other | downstream | 643020 | 19115061 ~ 19149730 (-) | False | vdrb |
| TU68851 | other | downstream | 736619 | 19055146 ~ 19056131 (-) | True | G46478 |
| TU69304 | other | upstream | 48418 | 19843044 ~ 19847398 (-) | True | tspo |
| XR_006251194.1 | other | upstream | 301763 | 20096389 ~ 20102458 (-) | False | srsf3a |
| TU69405 | other | upstream | 366814 | 20161440 ~ 20166279 (-) | True | G46840 |
| TU69571 | other | upstream | 734553 | 20529179 ~ 20531834 (-) | True | G46926 |
| XR_006251209.1 | other | upstream | 2945346 | 22739972 ~ 22750947 (-) | False | tardbpb |
