RNA id: XM_043242350.1


Basic Information

Item Value
RNA id XM_043242350.1
length 707
RNA type mRNA
GC content 0.44
exon number 4
gene id ppil1
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19873973 ~ 19875768 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCATGGCCTTGACGGTGTGCAATAACGAATAAACCGAACTGGGCAACTACTTCCGTACCACGCTTTGcgacatcatttttttttaaattatattttctaacaAACCGTATTTGTTGAATAACAGACATGGCTGGAATTCCGCCGGACTCATGGCAGCCCCCCACAGTATCGCTGGACACAACGATGGGCACTATCGTTCTAGAACTGTACTGGAATCATGCGCCAAAAACCTGCAAGAATTTCGCAGAACTGGGCAGAAGAGGatattacaacaacaacaagttcCACCGCATTATCAAAGACTTCATGGTTCAAGGAGGCGATCCTACGGGGACAGGTCGTGGTGGTGCCTCTATATATGGCAAGCAGTTTGAAGATGAATTGCATCCAGAGTTGAAATTTACAGgTGCTGGAATTCTCGCAATGGCCAATGCAGGGCCAGATACAAACGGAAGCCAGTTCTTCCTCTCGTTGGCTCCCACACAGTGGCTGGATGGGAAACACACTATATTTGGACGGGTCTGCCAGGGCATTGGGGTTCTTAATCGTATTGGCATGGTTGAGACCAACAGTCAGGACCGCCCTATGGATGACATTAAAATTCTCAGAGTCAATCTACCTAACTAAGACATCTGCTTGCATAATgtttcatgctttatttttgtacagtccttttattacattaaaccttcaaagttttcataaaa

Function

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
K12733 PPIL1; peptidyl-prolyl cis-trans isomerase-like 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69300 lncRNA downstream 31006 19841479 ~ 19842967 (-) False tomm6
TU69298 lncRNA downstream 31006 19841841 ~ 19842967 (-) True tomm6
TU69142 lncRNA downstream 35926 19834070 ~ 19838047 (-) True G46673
TU69107 lncRNA downstream 71707 19801243 ~ 19802266 (-) True G46647
TU69118 lncRNA downstream 81645 19791642 ~ 19792328 (-) True G46658
XR_006251200.1 lncRNA upstream 1544 19877312 ~ 19880582 (-) False LOC122347207
TU69309 lncRNA upstream 1560 19877328 ~ 19878677 (-) True LOC122347207
TU69310 lncRNA upstream 4470 19880238 ~ 19880588 (-) False LOC122347207
TU69329 lncRNA upstream 23937 19899705 ~ 19956730 (-) False LOC122347177
TU69340 lncRNA upstream 92478 19968246 ~ 19968460 (-) True G46803
XM_043242352.1 mRNA downstream 26541 19845350 ~ 19847432 (-) False tspo
XM_043242355.1 mRNA downstream 30979 19842297 ~ 19842994 (-) False tomm6
XM_043242335.1 mRNA downstream 73404 19795103 ~ 19800569 (-) True crbn
XM_043242336.1 mRNA downstream 73418 19795103 ~ 19800555 (-) False crbn
XM_043242349.1 mRNA downstream 79347 19792750 ~ 19794626 (-) True vhl
XM_043242312.1 mRNA upstream 23904 19899672 ~ 19905235 (-) True LOC122347177
XM_043242341.1 mRNA upstream 30083 19905851 ~ 19908068 (-) False LOC122347195
XM_043242340.1 mRNA upstream 30083 19905851 ~ 19908065 (-) True LOC122347195
XM_043242344.1 mRNA upstream 35226 19910994 ~ 19913842 (-) True c6h1orf159
XM_043242345.1 mRNA upstream 35226 19910994 ~ 19913825 (-) False c6h1orf159
TU69304 other downstream 26575 19843044 ~ 19847398 (-) True tspo
unassigned_transcript_1266 other downstream 207467 19666434 ~ 19666506 (-) True trnaf-gaa
TU68985 other downstream 318042 19553319 ~ 19555931 (-) False tsfm
TU68987 other downstream 318042 19553319 ~ 19555931 (-) False tsfm
XR_006251201.1 other downstream 724243 19115061 ~ 19149730 (-) False vdrb
XR_006251194.1 other upstream 220621 20096389 ~ 20102458 (-) False srsf3a
TU69405 other upstream 285672 20161440 ~ 20166279 (-) True G46840
TU69571 other upstream 653411 20529179 ~ 20531834 (-) True G46926
XR_006251209.1 other upstream 2864204 22739972 ~ 22750947 (-) False tardbpb
XR_006251207.1 other upstream 2864204 22739972 ~ 22750947 (-) False tardbpb

Expression Profile