RNA id: XM_043242357.1


Basic Information

Item Value
RNA id XM_043242357.1
length 6095
RNA type mRNA
GC content 0.46
exon number 41
gene id LOC122347206
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19949312 ~ 19959657 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTGAGGGCAGTCCAAGCACCAAATAGAGAGAGTGAGTTTTGCTGACTGAACACTTTGTGCTCTATATAACAAGAAGTCGAGTGCGAAGCCATTGACTGGGGGTGACTTCAAGTAGatttctCACGTCATTTTTCCAACTTCTACTGAAGGCAAAAGGAGTAAAGTGGCATCATGAGTGGGGATGGAGAAATGGAGTGTTTTGGACCGGCGGCCATTTACCTCCGGAAgccagagagggagagaatTGAGGCTCAGAACACACCATTTGATGCCAAGACAGCATACTTTGTGACAGAACCGAAGGAGATGTACCTCAAAGGGGTGCTAGTCAGCAGAGAGGGTGGCAAAGCCACTGTCAAAACGCTGTGCAACAAAaCCATCACAGTTAAGGAAGATGAAATTTTTCCAATGAATCCCCCCAAGTTCGATAAAATAGAGGACATGGCCATGATGACCCACCTCAGTGAGCCCACTGTGCTGTACAACCTCAAAGAGCGTTATGCAGCATGGATGATCTACACCTATTCCGGGTTGTTCTGTGTCACTGTGAACCCCTATAAGTGGCTCCCAGTATACGATGCTGTAGTTGTGACAGGCTACAGGGGCAAAAAAAGAATTGAAGCCCCACCTCACATCTTCTCCATCTCTGACAACGCCTATCAATTCATGCTCACTGATCGTGAAAATCAGTCAATCTTGATCACTGGAGAATCTGGTGCAGGAAAGACTGTGAACACCAAGAGGGTCATCCAGTACTTTGCGACAATTGCTGTATCTGGACAGAAGAAGTCAGAGCCAGTCCCTGGAAAAATGCAGGGGTCGCTGGAAGATCAAATCATTGCAGCCAACCCCTTGCTGGAAGCCTATGGAAATGCCAAGACTGTGAGGAATGACAACTCTTCTCGCTTTGGTAAATTTATCCGAATTCATTTTGGCACCACTGGAAAACTGGCGTCAGCTGATATTGAAACTTATCTGCTGGAAAAGTCCAGAGTAACTTTCCAGCTGTCTGCTGAGAGGAGCTACCACATTTTCTACCAGCTCTGCACTGGCCATAAGCCAGAACTGCTGGAGGCTCTTCTGATCACCACTAACCCGTACGACTATCCTATGATCAGTCAGGGTGAGATCACAGTCAAGAGCATTAATGATGTGGAAGAGTTCATTGCAACTGATACAGCCATTGATATCCTGGGCTTTACGGCTGAGGAGAAAATAGGCATCTACAAACTGACAGGTGCTGTGGTGCATCATGGGAACATGAAGTTCAAGCAGAAGCAGAGGGAGGAGCAGGCTGAGCCTGATGGAACTGAGGtggCTGATAAAATCGCTTACCTCTTGGGACTGAACTCTGCTGACATGCTGAAAGCCTTGTGTTATCCCAGAGTGAAGGTTGGGAATGAATTTGTGACCAAAGGTCAAACTGTTCCTCAggTGAATAATTCAACCATGGCTCTGTGCAAGTCAATCTATGAGAAAATGTTCTTGTGGATGGTTGTCCGAATCAATGAGATGTTGGACACCAAACAGCCAAGACAGTTCTTCATTGGAGTGCTTGACATTGCTGGATTTGAAATCTTTGATTTCAACAGCCTGGAGCAGCTGTGCATTAACTTCACAAATGAGAAACTGCAACAGTTTTTTAACCACCACATGTTTGTGCTGGAACAAGAGGAATACAAGAAAGAAGGTATTGAGTGGGAGTTCATTGACTTCGGTATGGACTTGGCTGCCTGCATTGAGCTTATTGAGAAGCCAATGGGTATTTTCTCCATCCTTGAAGAGGAGTGTATGTTCCCTAAGGCAACAGACACAACCTTCAAGAACAAGCTGCATGACCAGCATCTTGGTAAAAGTGGATGTTTCCAGAAGCCCAAACCTGCCAAAGGCAAGGCTGAGGCCCACTTCTCCTTGGTGCACTATGCTGGAACTGTGGATTACAACATCGTAGGCTGGCTGGATAAGAACAAGGACCCTCTGAATGACTCAGTGGTTCAGCTGTACCAGAAGTCTTCAGTGAAACTGTTGGCTCACCTGTATGCTACTCATGCTGGTGCTGAAGAGGCAGGAGGTAAAAAGGCAGGCAAGAAAAAGGGTGGCTCTTTCCAGACAGTGTCTGCTCTATTTAGGGAGAACTTGGGTAAGCTGATGACCAACTTGAGGAGCACACATCCCCATTTTGTGCGCTGTCTGATtccaaatgaatcaaaaacaccTGGTCTTATGGAGAACTTTCTGGTCATCCACCAGCTGCGCTGTAATGGTGTACTGGAGGGAATCAGAATTTGCAGAAAAGGTTTCCCAAGCAGAATCCTCTATGGTGACTTTAAGCAGAGGTACAAAGTATTGAATGCTAGTGTCATCCCTGATGGTCAGTTCATTGACAATAAGAAGGCTTCAGAGAAGCTTCTTGGCTCCATTAATGTGGACCATACCCAGTACAAGTTTGGACACACCAAGGTGTTCTTCAAAGCTGGTCTGCTGGGTACCCTTGAGGAGATGCGAGATGAAAAACTAGCTGAGCTGGTTACCATGACTCAGGCTCTTTGTCGTGGATACGTTATGAGGAAAGAATTCGTCAAAATGATGGAGAGAAGAGAGTCCATCTTCTCCATTCAGTACAACATCCGCTCATTCATGAATGTGAAACACTGGCCATGgatgaaactgtattttaagaTCAAGCCTCTGCTGAAGAGTGCAGAGACTGAGAAGGAAATGGCAGCCATGAAAGAgaattttgagaaaatgaaGGAAGATCTAGCAAAGGCCCTTGCCAAGAAGaaggagctggaggagaagaTGGTTTCCCTGCTGCAGGAGAAAAATGACCTGCAGTTACAAGTGGCATCTGAAACAGAAAACCTTTCTGATGCTGAGGAGAGATGCGAAGGGCTAATCAAAAGCAAGATCCAGATGGAGGCAAAGCTTAAAGAGACAAATGAAAGATTAGAGGATGAGGAAGAAATCAATGCTGAACTAACAGCCAAGAAGAGAAAACTAGAGGATGAGTGCTCTGAGCTGAAGAAAGACATTGATGACTTAGAGCTTACCTTGGCCAAagtggagaaagagaaacatgcCACTGAGAACAAGGTGAAAAATCTAACAGAGGAGATGACCTCACTGGATGAAAGCATTGCAAAGTTAACCAAAGAGAAGAAAGCCCTCCAAGAGGCACATCAGCAAACTTTAGATGATCTGCAGGCAGAGGAAGACAAAGTCAATACTCTGACGAAAGCCAAAACCAAACTTGAACAACAAGTGGATGATCTGGAAGGTTCTCTGGAGCAAGAAAGGAAACTCCGTATGGACCTTGAGAGGGCCAAGAGAAAGCTTGAGGGTGACTTGAAACTATCCCAAGAATCCATAATGGACCTGGAGAATGACAAGCAACAATCAGATGAGAAGATCAAAAgtaaatttttacttttGAAGGACTTTGAGATTAGCCAACTTCTAAGTAAGATTGAGGATGAACAGTCTATTAGCATTCAGCTTCAAAAGAAGATCAAAGAACTCCAGGCTCGTATTGAGGAGCTGGAGGAAGAAATTGAGGCAGAACGTGCTGCTCGTGCAAAGGTTGAGAAGCAGAGGTCTGATCTCTCCAGGGAACTTGAGGAGATCAGTGAGAGGCTTGAAGAAGCAGGCGGTGCCACTGCTGCCCAGATTGAGATGAACAAAAAACGTGAGGCTGAGTTCCAGAAACTACGTCGTGATCTGGAGGAGTCCACCTTGCAGCACGAAGCAACATCTGCAGCCCTCCGCAAGAAGCAGGCCGACACTGTGGCAGAGCTAGGAGAGCAGATTGACAACCTCCAGCGTGTGAAACAGAagctggaaaaagaaaagagtgaaTACAAAATGGAGATTGATGACCTGTCAAGCAATATGGAGGCTGTTGCCAAATCAAAGgGTAACTTGGAAAAGATGTGCCGTACTCTTGAAGATCAACTGAGTGAAACTAAAACCAAATCCGATGAAACGATCCGTCAACTAAATGATATAAGTGCACAAAAAGCAAGACTGGCTACTGAGAATGgtGAATTCAGTCGCCAGCTAGAGGAAAAAGAAGCTCTTGTTTCTCAGTTGACTCGAGGAAAGCAAGCTTTTACTCAGCAGATTGAAGAGCTTAAGAGAAACATTGAGGAAGAAACCAAGGCCAAAAATGCCCTAGCTCATGCTGTTCAGTCAGCAAGACATGACTGTGATCTGCTCAGAGAGCAGTACGAGGAGGAACAGGAGGCCAAATCTGAGCTCCAGCGTGGCATGTCAAAGGCAAACAGCGAAGTAGCTCAGTGGAGATCCAAATATGAGACTGATGCCATTCAGCGCACTGAAGAACTTGAGGAAGCAAAGAAAAAGCTTGCTCAGCGTTTGCAGGATGCTGAAGAGTCCATTGAGGCTGTGAACTCAAAGTGTGCCTCTCTGGAAAAAACCAAACAGCGACTGCAGGGTGAAGTTGAAGATCTCATGATTGATGTGGAGAGAGCTAATGCTCTTGCTGCCAATCTTGACAAAAAGCAGCGGAACTTTGACAAGGTTCTGGCAGAGTGGAAGCAAAAGTATGAGGAAAGTCAAGCAGAACTGGAAGGAGCTCAAAAAGAAGCCCGTTCTCTTAGTACAGAGCTTTTTAAGATGAAGAACTCCTATGAAGAAGCCCTGGACCATCTGGAGACCCTCAAAAGGGAGAACAAAAACCTTCAacaGGAAATCTCTGACTTGACTGAACAAATTGGAGAGACTGGGAAGACCATTCATGAGCTTGAGAAAGCCAAGAAAATAATTGAAACTGAGAAAATAGAAATCCAGGTCGCTCTTGAGGAAGCTGAGGGAACCCTGGAACATGAGGAATCTAAGATTCTTCGAATCCAGCTTGAGCTAGCCCAAGTCAAAGGGGAGATTGATCGTAAATTGGCTGAGAAAGATGAGGAAATGGAACAGATCAAAAGGAATAGCCAAAGAGTTATTGATTCCATGCAGAGTACTCTAGACTCTGAGATCAGGAGCAGAAATGAAGCCCTGAGAGTCAAGAAGAAGATGGAAGGAGACCTCAATGAGATGGAGATTCAGCTGAGCCATGCAAATCGTCAGGCAGCTGAAGCTCAAAAACAGCTCAGGAACGTCCAGGGACAGCTCAAGgatGCCCAACTGCACCTTGATGATGCGCTGAGGGTTCAAGAGGACATGAAAGAGCAGGTTGCTATGGTTGAACGCAGGAACAACCTGATGCAGGCTGAGATTGAAGAGCTGAGATCTGCTCTggagcagacagagagagctcGCAAAGTGGCTGAGCAGGAACTAGTGGATGCCAGCGAGCGTGTAGGACTTCTGCACTCCCAGAACACCAGTCTCATCAATACCAAAAAGAAGCTTGAGGCTGATTTTGTTCAAATCCAAGGCGAAGTGGATGATGCTGTTCAGGAGGCACGAAATGCAGAGGAGAAGGCTAAGAAAGCTATCACTGATGCAGCCATGATGGCAGAAGAGCTGAAGAAAGAGCAAGATACAAGTGCTCATCTtgagaggatgaagaagaaccTGGAGGTTACAGTTAAAGACCTGCAGCACCGTCTGGATGAGGCTGAAAGTCTGGCCATGAAGGGAGGGAAGAAGCAGCTCCAGAAACTGGAAGCTAGGGTCCGGGAACTGGAGAATGAGGTTGAAGCTGAACAAAGAAAAAGTGCAGAAGCTGTTAAAGGAGTTCGGAAATATGAGAGAAGAGTCAAGGAACTCACTTACCAGACTGAAGAGGATAAGAAGAATGTAACCAGACTGCAGGATCTGGTGGACAAACTGCAGCTGAAAGTGAAGTCCTATAAGAGACAAGCTGAGGAATCTGAGGAACAGGCCAGCACTCACCTGGCAAGATACAGGAAGGTCCAGCATGAAATGGAAGAAGCCCAGGAAAGAGCTGACATCGCCGAGTCCCAAGTCAACAAGCTCAGGGCAAAGAGCCGTGACATTGGAAAGGGAAAAGATGTCGCAGAGTAAACATCACCTTTAAAGAAGAGTTAGCAATAAACAATCATATAATATGAATTTGTGCTATGTCTGAGTCATGTGGTCAATAAAGTTGCCCACGAACCAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0032982 myosin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0005516 calmodulin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K24220 MYH1s; myosin heavy chain 1/2/3/4/8/13/7B/15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69310 lncRNA downstream 68724 19880238 ~ 19880588 (-) False LOC122347207
XR_006251200.1 lncRNA downstream 68730 19877312 ~ 19880582 (-) False LOC122347207
TU69309 lncRNA downstream 70635 19877328 ~ 19878677 (-) True LOC122347207
TU69300 lncRNA downstream 106345 19841479 ~ 19842967 (-) False tomm6
TU69340 lncRNA upstream 8589 19968246 ~ 19968460 (-) True G46803
TU69356 lncRNA upstream 38975 19998632 ~ 20000625 (-) True mustn1a
TU69354 lncRNA upstream 95209 20054866 ~ 20115259 (-) True G46816
TU69358 lncRNA upstream 140989 20100646 ~ 20102453 (-) False srsf3a
TU69397 lncRNA upstream 168291 20127948 ~ 20129839 (-) True G46836
XM_043242332.1 mRNA downstream 14887 19928355 ~ 19934425 (-) True p4htmb
XM_043242327.1 mRNA downstream 28034 19918053 ~ 19921278 (-) True kbtbd12
XM_043242344.1 mRNA downstream 35470 19910994 ~ 19913842 (-) True c6h1orf159
XM_043242345.1 mRNA downstream 35487 19910994 ~ 19913825 (-) False c6h1orf159
XM_043242341.1 mRNA downstream 41244 19905851 ~ 19908068 (-) False LOC122347195
XM_043242356.1 mRNA upstream 1539 19961196 ~ 19964821 (-) True arpc4
XM_043242637.1 mRNA upstream 5746 19965403 ~ 19966424 (-) True LOC122347402
XM_043242891.1 mRNA upstream 29262 19988919 ~ 19994672 (-) True eefsec
XM_043241479.1 mRNA upstream 39152 19998809 ~ 20000638 (-) False mustn1a
XM_043241480.1 mRNA upstream 39152 19998809 ~ 20000626 (-) False mustn1a
TU69304 other downstream 101914 19843044 ~ 19847398 (-) True tspo
unassigned_transcript_1266 other downstream 282806 19666434 ~ 19666506 (-) True trnaf-gaa
TU68985 other downstream 393381 19553319 ~ 19555931 (-) False tsfm
TU68987 other downstream 393381 19553319 ~ 19555931 (-) False tsfm
XR_006251201.1 other downstream 799582 19115061 ~ 19149730 (-) False vdrb
XR_006251194.1 other upstream 136732 20096389 ~ 20102458 (-) False srsf3a
TU69405 other upstream 201783 20161440 ~ 20166279 (-) True G46840
TU69571 other upstream 569522 20529179 ~ 20531834 (-) True G46926
XR_006251209.1 other upstream 2780315 22739972 ~ 22750947 (-) False tardbpb
XR_006251207.1 other upstream 2780315 22739972 ~ 22750947 (-) False tardbpb

Expression Profile