RNA id: XM_043242364.1


Basic Information

Item Value
RNA id XM_043242364.1
length 5234
RNA type mRNA
GC content 0.39
exon number 15
gene id arhgef25b
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19274117 ~ 19286211 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTGAGTGGGGATTAAGCAGGACAGCACTGAGAAGATACAACAAAACAAGCAACCAAACATTTACTTCATCAGTctggagacagagaaagaggaagatgaagagTTTGGCCAAACTTCAAGGAAACGCAGAGCAACTGATGATGTCTTTATCAAACACTCTCCCATCCTTGGCCCTGAGTAATCAGCACTGGATGCAAGAACACACCGAAGGGAGTCTTTTACTGCAAGACAAGCAGGGTTCAAAGAAGGATACAGAATGGGAAGATGGAGAACAAAGCTGGAGCTCAAAACTCAAACACATACCTGAGGGCAAAGAATCATACACATTAACAGGACTCAGCGATGTCTGCCTGCCTCCTGATACACCTTCAACCTCCATCTCCATTGATGACCTTTCTCCAATCTCACCCAGCAACCATCAGCCTCTTTCCACAAGACAACCCTCTACCACACCCCAACTCTCTGTCAAAGCCCTCAAGAGATGGTTAAGCAGCCCAGTTCGAAGGTTTAGTCTGAGTGGAGGTGGCAAGAGTCAGAGCTCAAAGGCCATTCAGAGCCCAGATGGGTCATCCTATATGTTTCTCCCTCTCTCGCCTGCTCAAAGCCCACTGAGCCCAACGGAGAAGTCCAAAAAACTGCCCCGCTCCTACAGATCTCTGGACTGTGCTGAACTTTCAAGGCCGACATCTCCTGACAGCCCCTATTACCCAAAATACCTAAATGATCTCTTGCAGAGGCATCAGTCTTGCGATGTGCATTCTTTGGAGAGAGATCTCGACTTGACTGACGAAACACAGGTACAATCAGAGGATGATGAGCAGGAGAGAAGAACTGCCTTAGAGAAAAGCATATATGTGCTGACAGAGCTGGTAGAGACAGAGAAGCTATATGTGGAGGATCTGGGGCTTGTGGTGGAGGGTTATATGGCTACAATGAATAGTGTTGGGGTGCCTGAGTATTTGGCAGGGAAGGATAAAATTGTGTTTGGGAACATTCATCAGATCTATGACTGGCACAAAGACTATTTTCTTGGAGAGTtggagagatgtgtgtgtgaacctgACCTGCTGGCACAGCtgtttattaaacatGAAAGGCGGCTCAACATGTATGTGGTTTATTGTCAGAACACGCCAAAGTCAGAGCACATTGTCTCAGAGTACATTGAAACCTATTTTGAgGAACTGAGGCAACAACTGGGTCACAGACTGCAGTTAAATGACCTGCTCATCAAACCTGTTCAGAGAATCATGAAATATCAACTGCTGCTGAAGGACTTCTTGAAGTACTACACTAAAGCAGGGAGACAAACAGAAGATCTTGAGAGGGCAGTAGAGGTGATGTGTTTTGTTCCAAAGCGATGCAATGACATGATGAATGTTGGAAGACTACAGGGTTTTGAGGGTCAGCTGAGAGCACAAGGGAAACTCCTGCAACAGGACACCTTCACATTCATCGAGAATGAGAACAGCATCCTCTCCCGTCCCAAAGAGAGACGTGTGTTCCTCTTCGAGCAACTTGTCATCCTCAGTGAGCCAATCGACCGCAAGAAAGATTTTTCCCTGCCAGGATACATCTATAAAAACAGCATCAAGATTAGTTGTTTGGGCATTGAGGAACATTGCCCAGATGACCCATGTCGGATGGTGTTGACCTCTCGTAATATCGATGGAAGCATGCACCGATTCATTCTTCGTGCATCATCTCCAGAAATCAGAACGAGCTGGGCATATGACATCCTACAGATCCTGGAGACACAGCGCAACTTCTTAAATgCCCTGCAGTCTCCTATTGAATTCCagagaaaagaaattaaatccCTTAGTCTGGGAAAGAGCTTGACAACTTCACCCTCACTAAACTCTGGCCTGCAACCCTATAGCTCTGCCTCCATAGACCGCCAGGCTTTGCCCTGTCTGCACTCCTGGAATTCTTTACAACCTTCTACACCTCATTGAAAGGTTAGTGTTTGCTGGATTGTGAAGGtgctttttcataatttatcCATTTAAATCTCAAAAAGAGAATTCCGTCTGGTCTCATGATGTTATATTTTGTAGAGTAttgatatttcatttaaagacTAACATGATTTCACTCTTCTATCATTTCCAGCTGTCAGTCCTGAAAAGGCATTTTCTTATCTTCGTCTTCCATCAACTTGTAAAATGCCATCTGTTATCCTCAGAAGGAACATTTTCAATCTGttactttttcttatttcaatTTAGACATTTTCTTTAGCAGTGTATATTCACTGAATGCCactgattttcatttaaaaagctgtcaataaaaagatttttaagttATCCCAAGCATCTCTGTGTTTATATTCTATAACCGGATTTACTTCATTTTTCAGGAAAAACAAGACATGCTACAAAATGTTATGACCAAAGCCTTTATCTCATTCCATTCGAcaacaaatgctttttcttacatttacaaaagagGGGGggggggctttttttttttttttgccccttTTATATTTAAGGGACTTTTGCATATACTacatgttctttaaaaaaaaaattataagtaGGCAGCCACACTTTTTTGGGGGACAGAGAATTAGCTACCTACTGGTAGACAtacaaacactaaaataaattaagagtCATGCAGACAAAGTGAGAAACCTAGAGATGAGAAGACAGAATCGCTGCCGTTAAATGAGGAGGAAGCAGAGAAGTTGTTTGAGAAATAGCATCATCAAAGTCAATCTCAACATTTAATACGCAGCTAGAAAATCAAATATTCAGCTTCCAATATCTGTTCAAGCCTCCATTACCTTATGCTCATCTGAAACTAACCATAAGAATCAAGTAGCCTTACATCAATGCTTTTACATGCTCCTTTTTGACCTTGCGCTCATGCTTACACTTGAATATGCAGAGCAGATAAATAGATGCATTCTCCAAACAGAATCATAGCATCTCTATACTTATACTATTGCAGGACTGCATCCTTTACTTGTCTTTTTCACAACTAAAACAAGCTCGGTGACTGGTAGAGAGCAATATAGAACAATTTAAAAGGgcttactttttttctgttttgagaGGTATCGCATGGCATTCAAGATACAAGTGAATAAGAGTTAGTTTTCAATTGTGTTTTACACCattgcttgttttaaaatgtgatttttatactgaacctctctttttttcttttccaaactGTGTTCTTTTACTTCCTTAACCTCTTTTAAGGCTTGCTGGACAGTCAATTTACTCCTGTATGGCACCGTTTTTAGACAGGATGTAACAGAAAGTTAAGGGAAAAATATCACATACTCCTCACGCATACCTTGACAAGGCCATAATGTTAGACGTTATTTGAAGAATTTGTGGTTCAATGGATAATGCAGCAAACAGTCATTAGGGCCTCATGCCAATGATGAGCGATAATGTAAAATCCATTTgatgtagttaaaaaaaaaacacttatctctctctcacacacacacatcaaacaatATGCAGGGAAACATAACTAAATTATGCACAAGGATGCTATACTGTACACTGGATTAGACAGCAATTACATTGGCTTCTTACGTGCTTTCACTCTACAaagggttgtttttttaattattatttatttctatcaaatatagattaaaaatcaaggtggagaccaatttaaattgtttatcaTTATCTTTTGATCTTAAAGGTTACTTTTTGTTGAGAAATATACATAGTGTCTGTTTATGATTTcttagtattgtttttttttttcattttacattttcatcacaAAATGTATGATAATATGTGGGAAATAATTAGAATTAATAAAGCATCAGGTGTGTCCCTATTTCTGACTGCTGCTGTAAATATAGcctaacattttaacattaaccattttattagatttttttcttatgtgcAACTATTCTGAAAAGTCTATTAATGTTCCTTTTTTATGTTAGTAAGGTTAGTTATTTTAGCCATTCTGCATAGCCACTGCAACCCCGCCCCAACCCCTACcacccatcacacacacacacacacacacacacacacaaccacacacacacgcacactcaaaTGGCTTTGAATGAAATccagatcaaataaatacatatataaaacttttacaGTAAGTGCCTTTGGAATATTTGCTTATGATGCGTGATTGCTAACTAAATTTGAAAAAGGCAACATAGGACAGTGCTGCTTCACATCTGGCTGCTATTGAAATCAGGCTGCATGCTTCAGTACAATAGGACACAACCTTAAAAAGACCCCAGaataaaggaaattaaaaaagtataaacaataaacaagtcATACCAGGACAGTGATTAAGCCTTTGGCACAGTCACTCTTTAGaacagaaaaaatatcaaattcagATTTTACTAATGCACAATGAATCACCCCTCCTTCTCTAACTGAGAAATTTCCTGGAGTGTGTATgtgggagggagagagagaatgaaagtgATATGTTGGATTGTCTGTGGTTTTAGCTTGCTAATGATGTTCAGTCTTTTCCTTCTTTTAGTGACGTTGAGGGTCGGGTCTCTCCAAATGAAGTCCATTTGTTTTAGTGCAAACGTACAGAGAGATGACCCTCAATAaaacgcacacagacacacatacacaagtaCACACACGATTAATGCCAGACAGGGAGCTGATGTGACATTCCACCTGAATGTCCCAAAGAAGGTGTCTCCCTTTAACTggatttaaaaattctaaaagtcatggttaaaaatgtttacctCCGCAGTCTTCTTTTTCGTTCTTCAGTTTCAAAAGAAACTTCTTCTTTATTCTCATCAGTTTTAAAAGactagtttactcaaaaatgtcaattctgtcataaattaataatattgtacGTCTCCTTAAGTCTGAAACTACATCCGCTTGAGGAAATTATGACAGAATCCATTTTTGGTCTCAATGTCCATTTAAATGTGATACTGAAACATGATTGGCTGAGGAGAAAAAGACAGCTGAGCATAATTTACGGAATGGTTTGATCTGTATCTAAAGAATTcttctgaacaaaaataaagctaaagaaAGGAGACACAAAAATACGACATCTTCAGGtatcaaaaaaatcttaatcaGCCATCACTGTGTATCTCATCCGTCAGTCATGTTTGATCACTTTATGACCTATCCAAAAGTAGAGGCCTATTTGAACTCCCCCATACTCACATGGGACCATGAACAGTACATCCACAGCGCACTTCCAG

Function

GO:

id name namespace
GO:0035023 regulation of Rho protein signal transduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68898 lncRNA downstream 31306 19212639 ~ 19242811 (-) True G46509
XR_006251202.1 lncRNA downstream 122423 19149746 ~ 19151694 (-) True LOC122347223
TU68847 lncRNA downstream 225281 19044704 ~ 19048836 (-) True G46477
TU68845 lncRNA downstream 225371 19044628 ~ 19048746 (-) False G46477
TU68953 lncRNA upstream 107266 19393477 ~ 19397730 (-) True G46540
TU68954 lncRNA upstream 107266 19393477 ~ 19397405 (-) False G46540
TU68955 lncRNA upstream 107266 19393477 ~ 19397730 (-) False G46540
XR_006251216.1 lncRNA upstream 320151 19606362 ~ 19607056 (-) True LOC122347383
TU69118 lncRNA upstream 505431 19791642 ~ 19792328 (-) True G46658
XM_043242290.1 mRNA downstream 13968 19251533 ~ 19260149 (-) False os9
XM_043242289.1 mRNA downstream 13968 19251533 ~ 19260149 (-) True os9
XM_043241812.1 mRNA downstream 23427 19244648 ~ 19250690 (-) True c1galt1b
XM_043242852.1 mRNA downstream 37300 19233271 ~ 19236817 (-) True apof
XM_043241839.1 mRNA upstream 11680 19297891 ~ 19302750 (-) True krt4
XM_043241167.1 mRNA upstream 31366 19317577 ~ 19321542 (-) True zgc:158846
XM_043241899.1 mRNA upstream 55882 19342093 ~ 19390664 (-) True scn8ab
XM_043241901.1 mRNA upstream 55882 19342093 ~ 19390664 (-) False scn8ab
XM_043241900.1 mRNA upstream 55882 19342093 ~ 19390664 (-) False scn8ab
XR_006251201.1 other downstream 124387 19115061 ~ 19149730 (-) False vdrb
TU68851 other downstream 217986 19055146 ~ 19056131 (-) True G46478
TU68756 other downstream 556629 18714174 ~ 18717488 (-) True G46423
TU68751 other downstream 628983 18644306 ~ 18645134 (-) True G46420
XR_006251187.1 other downstream 1500010 17743715 ~ 17774107 (-) True opa1
TU68985 other upstream 267108 19553319 ~ 19555931 (-) False tsfm
TU68987 other upstream 267108 19553319 ~ 19555931 (-) False tsfm
unassigned_transcript_1266 other upstream 380223 19666434 ~ 19666506 (-) True trnaf-gaa
TU69304 other upstream 556833 19843044 ~ 19847398 (-) True tspo
XR_006251194.1 other upstream 810178 20096389 ~ 20102458 (-) False srsf3a

Expression Profile