RNA id: XM_043242374.1


Basic Information

Item Value
RNA id XM_043242374.1
length 3259
RNA type mRNA
GC content 0.44
exon number 19
gene id hdac7b
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19113678 ~ 19123976 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGTTAAGCTAAGAAGCAAACAGCAGTTGATGTAGTGAGAGGAGAGGAAGCTCAGCAGGAGGGGCTTCAGGGAGGGCAGTGTGAGCCTAAATGTCACTCAACATAATCACACCTTTGGAGTTCGCTGTAGTGCGGGGCTGGTGCTATCTGCAGGTGCTTCAGATTTGTTCGGCTGTTCATTTTCTGATGCAGACAGCCTGAGAGTGCAAATGCACgttgtttgtctttttcagaTGAGCATTCGATGCCTGGAAACCTATTAGAGGTGTAAAAGTTATGCAGACGTGACAGATGTCTGAACATCAGCACGGGAAGCTGGAGAGAAGGAGGGAGAGCAAACAAAAGCCATTTAATCAGcctctgaataaaaataagagcGAACAAACAGGTGCATGTTCCGGTGCCAGTGACTGGGTGAAACGAAAGCTAAATCATCACATTCGAAATAAACATAGGAAATTGGAAAGTCAGGGTCCAACCCAACTCTGTGCATCAAACATACCTGAATCTCTTTGTTCGAAGGAGGACAGTCCTTTAAGAAGAACAGCCTCGGAGCCCATTCTGAAGCTGCGACTGAAGAGAAGTGCATCGGGAAGACAGAACCCACTGCAGCGTAAAGCCAGTGCGCCTCCTGCTGTCAGAGCGTCTGACTCTATGGgGGGATCGTCTTCCAGTTCTACTACAGTATCCATAAGAAGTTCCTCAGCAGATAAAAAAATGAACCGGCAAGAACCAGAGACCTATAGCATGTCATCACCACACCAGCTAGATTATTCTTTTCTTCAGGGTGAATCTTCTGTACACGCTGATGTTCAAAGCACCATGCTCTGGACTAGATACGAACAGCCTCTCTTTGCCTTGCATCCGCCTGTTATTCCAGTTCATGGACTACAGCCGGTGGTGATGTCTCATAGACCTTTGTGCAAATCCCAGTCGGCACCTTCTTACTACCAGCACGTCCACACTCAGACCATTATGATTACACACCCCATGTACCAACAGCAATGGCCACACGACTCATTCCAGCAACACACCGAGACAAATGTACATTTGCATACAAACACGCAGAGCTCTTTTTCCCAAACTCATTATAAGGTGCCTCTTCACAGGGTGCAGCCTGGGTCATTTAGATCCctgagaaaacaaagagagagaacaggagaGGACTTACACATACCGTCTGAATCACCACATGGATGCTGCAGTAATCAGTCGGGAGTAGTGCAGCGCAGTGAATGCTTTGATGtgcaaaaactaaatgtatatcCCCGGAACCTTGCACGTGTGAATTCCTCTCCAGGCACCATCGACAGAAGTCTGCCTTCACGTTTATCCTTACCTCTCGGCCGGGATGTCAGAAGAAAACCAAACTGTACCACAGGTTTGGTGTTTGACTATCAGATGAAACATGAATGTGTCTGTAAAGATACCAGCTGTGATTCTGGGCATGCTGGCAGAATTTTGAGCATCTGGTCAAGACTAAAGGAGTGTGGCCTCTGGAACCAGTGTAAGTTGGTTACAGGCAGGCCAGCCACGTTTGAGGAGCTACTCTCGGTCCATTCAGAACAGCTTATTATCAGCTTcttccaaaaaacattttccatgtCGTATCAAAGTCAAACAGATCATGATACGGTATTGAGTAATTCCTGCAATGCAGAATTTCTGAAGATGTCAGTGGGCAGTCTGATAGCACTGGCTTTCCGAGTGGCTGGAGGAGAGCTAAGAAATGGGTTTGCTGTTGTCACAACACCAGGACACCAAGCATCACAATCTCAAACATATGGTTCCAGTATATTTAATTCTGTAGCCATTGCTGCTAAACAGCTTCAGGAGAAATTAAAGGTTAAGAAGATCCTTATAGTAGATTGGGATGTTCATCATGGTAAAGGAACTGAGGAGATATTCTACACAGATCCTAGTGTCCTCTATATATCCCTGCATCGCTATGACGATGGTTCCTTCTTTCTTGGAAATGGAAATCCCACCAGGgtaGGATCAGATAGAGGGAAAGGCTATAATGTAAACGTGGCATGGTCAGGAGGCCTGAATCCTCCAATGGGAGATGCAGAATACCTAGCTGCATTCAGAACGGTAGTGATGCCAATTGCTCATGAGTTTTCCCCAGATGTGGTGCTAGTTTCAGCTGGTTTTAATGCTGCTGAAGGTCACCCAGAGACTCTGGGTGGATACAAAGTCTCAGCAAACTGTTTTGGATTCATGACCCGAAAGTTAATGGAGTTGGCTGAAGGTCGAGTGGTGTTGGTGTTAGAGGGAGGTTATAACCCCACGTCCCTCTGCGACTCACTGCAAGCCTGTGTGAGCGCTCTCATGGGaaacaagCCTGAGCCTTCAGATAAGGAGTTAGTAAGGAAACCCTGCATCAACGCAGTCGAGTCTCTAAGGACAGTTCTACAAGTTCAGAGCAGGTACTGGCATTCAGTGAGGCCTATGGTAAACACAGTGTCTATGTCCTATGTGAATGCAGAGAGGAGATACTCGGCAGGCCGTGAAGCTGCTTTAGTCCTGGATGGCCTTCATATGACTCTTCCAAGCAGCAGCCGTTTTCTGAATGAGCCTATGGAGCACGATGAAGCTGATTCGTTGTAGAAGCCAGTCTATTCCTCTCCAGGCAGAAGTCAGACATCCAGCGCTGTAACTGACTGTGATCTATGACGGCTGCAGTGACAATCCTCAGGAACTTAGCTAAACAAGAGAAATTCACTAACACATCTTGTGAGTGATTTATTGAAAAGTAATTTGATGACAAAGATTTGACTCACGAAGCCTCTGTGCAATGTCAAATAAGGTTTTCAtacagacaggaagtgaaaaTTTACCCAGAATTTTTAAGGGACAAAACATTTGGTTAATACACTACCTTTTGAACATTTGGGGTCGGTCATTTTTGCACTGAAACAGCAGTCCCtactaatttaaaaagaatacaatcctgagatattttgcattatgtttaagctatgtttttatcattattaacaGTGACAGTGATATCCTTGTATCTCAAGTCTTTATATAGCAAGAATTTAAAAAGGTACAAAGTACTTAGTGCTTTACTGTGTCAGTATCAGTTAGTATTTCtgagattttaattttttttattaccaagcttgtaaatatttgttttgtgaaatacCATGACAGTACttgcatatttttcagttttttttatattattttttatattgtttttgtaatattttcattttacttaatTGTCTTGAATATGTTTTGCTGt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68847 lncRNA downstream 64842 19044704 ~ 19048836 (-) True G46477
TU68845 lncRNA downstream 64932 19044628 ~ 19048746 (-) False G46477
TU68850 lncRNA downstream 64932 19044704 ~ 19048746 (-) False G46477
TU68844 lncRNA downstream 69809 19043616 ~ 19043869 (-) True G46476
TU68814 lncRNA downstream 141308 18970170 ~ 18972370 (-) True G46463
XR_006251202.1 lncRNA upstream 25776 19149746 ~ 19151694 (-) True LOC122347223
TU68898 lncRNA upstream 88669 19212639 ~ 19242811 (-) True G46509
TU68953 lncRNA upstream 269507 19393477 ~ 19397730 (-) True G46540
TU68954 lncRNA upstream 269507 19393477 ~ 19397405 (-) False G46540
TU68955 lncRNA upstream 269507 19393477 ~ 19397730 (-) False G46540
XM_043241881.1 mRNA downstream 34787 19071405 ~ 19078891 (-) True cnga3a
XM_043241306.1 mRNA downstream 125238 18986050 ~ 18988440 (-) True LOC122346582
XM_043242960.1 mRNA downstream 348195 18763245 ~ 18765483 (-) True LOC122347578
XM_043241381.1 mRNA downstream 369562 18743065 ~ 18744116 (-) True LOC122346645
XM_043242401.1 mRNA downstream 406082 18706623 ~ 18707596 (-) True LOC122347235
XM_043242380.1 mRNA upstream 5242 19129212 ~ 19149731 (-) True vdrb
XM_043242378.1 mRNA upstream 5242 19129212 ~ 19149730 (-) False vdrb
XM_043242479.1 mRNA upstream 29069 19153039 ~ 19173171 (-) True tns2b
XM_043242466.1 mRNA upstream 51896 19175866 ~ 19187427 (-) False eif4bb
XM_043242467.1 mRNA upstream 51896 19175866 ~ 19187426 (-) False eif4bb
TU68851 other downstream 57547 19055146 ~ 19056131 (-) True G46478
TU68756 other downstream 396190 18714174 ~ 18717488 (-) True G46423
TU68751 other downstream 468544 18644306 ~ 18645134 (-) True G46420
XR_006251188.1 other downstream 1339571 17743715 ~ 17774107 (-) False opa1
TU68985 other upstream 429349 19553319 ~ 19555931 (-) False tsfm
TU68987 other upstream 429349 19553319 ~ 19555931 (-) False tsfm
unassigned_transcript_1266 other upstream 542464 19666434 ~ 19666506 (-) True trnaf-gaa
TU69304 other upstream 719074 19843044 ~ 19847398 (-) True tspo
XR_006251194.1 other upstream 972419 20096389 ~ 20102458 (-) False srsf3a

Expression Profile