RNA id: XM_043242410.1


Basic Information

Item Value
RNA id XM_043242410.1
length 2369
RNA type mRNA
GC content 0.45
exon number 11
gene id uap1
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 16649465 ~ 16659733 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTTTGGCGTTTCCGCGTGTCCTGCCACGTCAGTCTCTGACGGATCTCGGAGGAGGATCTCAAGCAGTGAAGGCGGTGCTCTCAGGAGATGTAGCCGTGTCTTTAGTCCTGCTGAAGTGAGAGGGAAGTATTAAGTGGTCAGCAGCTATTCGAAAGATCTAAAGGAAAGACCATGGACACCAGAAAACTGTCTGAGAGACTCGCTGAAGCCAGACAGCCTCATGTTCTCCAATACTGGGACCAGCTAAGCCCCGAGGAACAAGCTGAAATGTTTGAGGATTTGGAGAGCCTGAACTTTATGGAGATCAATAAATTCTTTGAAACTGCCATGAAGGCGTCTGGGCAGAATTCACAGGAGAAGGTGGACACCAGAATGGAACCGGTGCCCCGAGAAGTTTTGGGAAGCGTAACACGCGATCGTGAATGTCTCAAAGAATGGGAAGAAGAGGGCCTTCGCTGTATATCAGAGAACAAAGTGGCAGTTCTTCTATTGGCTGGAGGGCAAGGGACACGGCTGGGTGTATCATATCCAAAAGGCATGTATGACGTACGCCTCCCCTCTCACAAAACCCTCTTTCAGATCCAGGCGGAACGAATCAGAAGACTAGAACAGCTCGCTGAAAAACAGCACTCGAGGAAGTGCTGTATTCCATGGTACATTATGACAAGTGGCAGAACAATGGACATGACCAAAACTTTCTTCATACAACAGAAATACTTCGGCCTGAAGGAAGAGAATGTGTTCTTCTTTCAGCAAGGCATGCTTCCCGCTGTAGACTTTAATGGGAAAATTATTCTAGAAGGAAAAGGCAAACTGTCCATGGCACCAGATGGAAATGGGGGCCTGTACAGAGCTCTTGGGACACAGAACATTGTGAAAGACATGGAGATGAGAGGAATCTCCTACATCCATGTCTACTGTGTAGACAACATTCTTGTGAAAGTGGCCGATCCTGCTTTCATTGGCTTCTGTACACTAAAAGGAGCTGATTGTGGTGCAAAGGTTGTGGAGAAGACCAATCCGACAGAGGCAGTGGGCGTGGTCTGTAAGGTGGATGGGCGTTATCAAGTAGTGGAATACAGCGAGATTACCTTGGCAACAGCAGAGAAACGAAGCGCTGATGGACGCCTTATGTTTAATGCCGGCAACATAGCTAATCACTTCTTCACCCTCACATTCCTCAAAGAGATTGTGAGGACTCATGAGCCACAGTTGCAACACCATGTGGCACAGAAGAAAATCCCCTACGTGAACACACAAGGACAGCTAATCAAACCTGACAAACCCAATGGGATTAAGATGGAAAAATTTGTCTTCGACATATTTCAGTTTGCCAAAACATTTGTGGTATATGAAGTTCTGAGAGAAGACGAGTTTTCTCCGTTGAAAAATGCAGACAGTCAAGATGGGAAGGACAACCCCACTACAGCCCGTCAGGCCCTCATGTCCCTGCATCACCGCTGGATCTTAAATGCAGGAGGACATTTCGTTGATGAGAATGGAACCCCTATACCTGCTATACCCAGACATGGACCAGCAGGGACAGTCACACCTGAAGTCAGCCAGAACCTGAAGGATGGAACAGACCTGCCAATCAAATGTGAGATCTCTCCTCTTGTGTCTTATGGTGGTGAGGGGTTGGAGCATCTTGTGAATGGAAAAGCTTTCCAGCCCACTCTGGTCATCGATGAGAACGGCGTCCGCGAGCTTGTGAAGAACGGCCTGTAAAACCTCAAACCAGCTGCTGCATTTGAAACCAaaatgaaggcttttatctcttcatcttcatctcacTTCCTGCCAGGGTGGAGGAAACCATGAAATTCTTGTGCAATAAAATGAACGAAGGGTGCCAGAAGGCTAATCACAATCGAATAATTTTAGAATCCAGCTATTTATTTTGCGaagacttatttttatattaatgtgcaGTGCTTTTTTTCTAGAATTGGAACTTGTGTTcagtcatttaatttatatatagatgtatCAAATGATACGCTGCATGAATGGTCACTGCTAAGATTTTAGGCATTTCCTGTTCAACCTGTTTCGCTCTTTgaaaatgtacatacatgtaaaaCAAAGTTTGGTCTTCTCTATGGATGTCTGTTTTTAACAGGTATGCTTTCGACGATAAAAAGTGAGTGGGAATGTGACACTGCATCAGACTTTCCAGCACAGGGTTTATGGGAGAAGTTCTGATTGGTTGGAATCGGTTGCTGCCACTGACGGTGCTTCAGAAAATGTGTACTTTGAGACACCATCTCACTTTTTACAGTCTAGCTGTCCCACTCCTTCAAATAGCCTTTGTCTGCACCGTTTATGTTTGTTTGGGCACATCCATGTATAAACTAATTTATCATGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016779 nucleotidyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67746 lncRNA downstream 326660 16320413 ~ 16322805 (-) True G45770
TU67717 lncRNA downstream 378357 16270902 ~ 16271108 (-) True G45753
TU67716 lncRNA downstream 380073 16268915 ~ 16269392 (-) True G45752
TU67715 lncRNA downstream 381923 16267183 ~ 16267542 (-) True G45751
TU67666 lncRNA downstream 530879 16058245 ~ 16118586 (-) False G45709
TU67946 lncRNA upstream 527723 17187456 ~ 17187794 (-) True G45897
TU67960 lncRNA upstream 583947 17243680 ~ 17246369 (-) False LOC122347244
TU67974 lncRNA upstream 753305 17413038 ~ 17414139 (-) False brinp3a.2
TU67995 lncRNA upstream 854905 17514638 ~ 17518605 (-) True G45930
TU68086 lncRNA upstream 1147888 17807621 ~ 17808115 (-) True G45993
XM_043242696.1 mRNA downstream 1850 16618572 ~ 16647615 (-) False ddr2a
XM_043242694.1 mRNA downstream 1850 16618572 ~ 16647615 (-) False ddr2a
XM_043242695.1 mRNA downstream 1850 16618572 ~ 16647615 (-) False ddr2a
XM_043242693.1 mRNA downstream 1850 16618572 ~ 16647615 (-) True ddr2a
XM_043241042.1 mRNA downstream 32266 16610280 ~ 16617199 (-) True hsd17b7
XM_043241907.1 mRNA upstream 16552 16676285 ~ 16683433 (-) True LOC122346973
XM_043241906.1 mRNA upstream 27645 16687378 ~ 16764274 (-) True nos1apa
XM_043242107.1 mRNA upstream 128944 16788677 ~ 16796152 (-) True rgs5a
XM_043241263.1 mRNA upstream 147878 16807611 ~ 16809797 (-) True rgs16
XM_043240975.1 mRNA upstream 157645 16817378 ~ 16830261 (-) False rgs8
TU67772 other downstream 285445 16361200 ~ 16364020 (-) False fam183a
TU67689 other downstream 588999 16059893 ~ 16060466 (-) True G45731
TU67688 other downstream 589698 16058968 ~ 16059767 (-) True G45730
TU67521 other downstream 1043995 15603910 ~ 15605470 (-) True G45606
TU67455 other downstream 1318648 15328967 ~ 15330817 (-) False LOC122347580
TU67937 other upstream 156907 16816640 ~ 16830208 (-) True rgs8
TU67944 other upstream 526956 17186689 ~ 17187318 (-) True G45895
TU67962 other upstream 648082 17307815 ~ 17308478 (-) True G45910
XR_006251188.1 other upstream 1083982 17743715 ~ 17774107 (-) False opa1
XR_006251187.1 other upstream 1083982 17743715 ~ 17774107 (-) True opa1

Expression Profile