RNA id: XM_043242413.1


Basic Information

Item Value
RNA id XM_043242413.1
length 3582
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC122347243
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 17217987 ~ 17224910 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAATAATTGGAATTTCTAAAATGTGACAGATACTgaacactaaaatatttaatcagtaaaaaattgtggctgtaaaaaaaaaaagtgtaggcTGTAGAAGATTTTTTAATGTCTTCATGCACTAAACTCAAACAGCTGGAAATGTCATGGAAATTAATTCTCAGAAAAGAGCGTCAACCCATGtggcgcgtgcgtgcgtgcatgtctctgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgctggacaGTGTTTGGTCCAGAGGTTTCCTGCTGGGACACATCAGGAGCTCATAAACCAGCCCAGAATAGCAGCGTGTCAGATGCCCTCCTAGCATTTGCTACTGTGGCGGAGTCTCAGTGAGGTATTTTAAACTGCAGCCTCGAGCCACACGATAATGTCCAGCCCTGTGGAGAAGAATCAATGATCACTGCATCACACTCAAAATTGGAATCTGATGATTTGCTATACATCcttctctctcattctcactCAAAATCTAGTCTCACAAAACTATGCAAGTGATGAAGCATTTTTTATGTGTTCTTGAGTGAAAGCTACCGAAGGCTGAATAACATATAACTCAACCAACCCATGCTTtgattttagttagtttttggaacagaaaaaaatagatgaTAATACTAGAATAATAGGCTGatgaaaaatactttatactttaCAGTTACACCATTGGCCAGTGAATTTTGAGTAACTATTAGACTAGGTTGGAATGAAGCCCAGTTAAGTAGTTTTACTAGTTGGACTGAAGGTCTGTCAGAATTTCTAAAGAATTTGTCCCTATGGAGTCGTGGTGTTTCACACAtacaagtttatttgtatagcgtttcacacaatacaattaaaaataaaagttatatttagGAGAAGCAAGGTCATGTCCATACGTcagaaatgtacaataaaaatcGTGCAGTTAGTTGATGGCATGTATTCTGTTAACAGCAATGATTGCAGCAAATGTGTAGCATTATTTGGTAGTTTTGTACAtgcacacaaatgtttttgcttgtGTGTGATATGCATCAGACGGTCAGTGAGAGAAATGTAGGTGGGCCGTGGGTGGCCCGTCTGAGGCCGGTACTACTCAAACATAGTAGAACCGCTCTGTGTATTGTATCATCAGCCAGTGAAGTGTTTAGCAGCTTGGGCATcaattatttcagttattagCACAGATAAATATGTGCAATGATACAATCACCTGAAATCACAGACGAGTACCATCTTTTCTCCTTCTCATTTCTCTCTAGTACTCATTATAGCAGCATGCTGTGCTAGTTTAAGCTTCATAGCAAAATTAATTCAGTGTTATGACGCACATTGAAGATCAATTCTGTGAATGATTTAAGCTGGTCTCGTTACTCAGCGGCGCGTctagaaaagaaaagcaaaccCGTCGCAAATGGTAAGTTGTGggttttttgttgtcattttttttttttccctgattgCCATGACAACGACATGCTGTTTTTGGCACATAAATTTCCCCTCATTCATCTGTTTGTCTTTGCCTGCAGAGCCAAGACATTGTCGGCATCAAAATAACTTCGCTTTGTCAAATATTTGTGTGGAAAATCCTCTCTAGTCTCGTATGTGGCCCGTGTTTGTCGTCACTGAGAGACTGTCACAAGCTAATGAGAATTCTTACTCTTCCGTGAGTAAGTGTTGAAACTATTTGAGTTTAACAAGCTGGAAATAACTATGCCACATCAAATGCCTTCAAGAGTTTCGTAAAATCACATTTGATTAGAGCCAGAGTAATATACAGCTTTTATTGTAAACAGTTTTGAATGGCCTAAATTGAAGCTGAAGTTGAAATAGAGCACCGTGTCAGGGTTGCTTTTGTTGGCAAATTGCAAATCTTTCCATCTTTGTCAGTCTCCCTCTCTTCAGTCACtcttttaaaaggtaaaaactttgtgttttgttttttttttttaacattgtgaTGTCCATTGGCCTATAAATACTATTCGAGTTGCATGTATGAGCATTAATATACTGTTTTGTCAGCtgcaaacaataaattatgctcTCTTTGTTACTCAAATGCCAACCATGAAATAATGGTTCTGAGTGGACCAAAGCATGTTTGAGAACTGCAACGCTGCAGAACAGCCGAAGCTGAGCTTTCGACAGGCGGGCAGCAGCACCTCCACAGACACATCTGCGGGATCAAAGACGGGAGGCAGCCAACGCTTTCAGAACGCTTTCAACTTGGGCAAAGCCATGGGAGCCAAGGTAAACGACCTGCTTCGACGAAAAGATCCCAGCAGCCTCGGAGACATCGGAGTCACAGAGGTGAACAAGAACGTGGAGCCAGTGTGGTCCAGCCTGGCTGAGATGGGCCACACTACAGCAAGAAACAGtCACATCTCCTTGGATTCCTTCCCTCGGCTGGATCCCCCACCTCCCACCGGCAAAAAGCGTCTCCCACGGGCCCTGAAGACCACCCAGGACATGATGATATCTTCTGACCCCGTGGTAGCCTCCCCAGAATCCTCCTTCGTCTCCTCACCTGACAAGATCTCCAAAGATAAAGCTGAGCTTCAGCCTGAAGAGTCCGGCCCTGAGAAACCTTCAGGACCCGGCGACCGTGTCGACAGCCAGATGGAGAAGACGCCTGGTTCAGAACTAAAAAACGAGCCCACAGCTGTGGTGACGGATGAGAAAGATTCAGAGGAAGTCGATCAGTCACAGCTGCTGCTCTCTGTTCCAGATCTCATTCACAAAGACAATCTGGACCCAAAGAAACTGGCCAGCTCGGAAACTAGAATGGCTTCCACCCCGTGTCCAGGGAAAGGGGGCTGCCGCATCAGCGTCACTGAGGGGGAATTGTTGGGGAATGGCACGGCGGATTACCGGACCGTCAGCCTGGAGAACGAAGAATCCCACCCCGACCTGCTGTCATTCGAATAACAGGCTTGAGACCCTCAAGATCATTGATTCTCCAGGCTTCTGCGATGACAAAAACTGCTTTCATTCTGCATTTCATATTTTGCCTTTAAGTACCGCTGATTGTACTTAGTTATTTCATAgatataattattcaaatgataaaaatcactgttgttttttgtttttaatcgtAGCACCATAATCAATTTAAAAgattgtattttaaagtatttgtgGACctgtaacaaacaaaacatgatgAATCAATTAACAGAAGCCAAAGTCAATAGTACACTGCAAAAAGGagttttaattagtatttctTGGCTTTTTTTCCAGTCAAATATTCCAGTAGAACTTCAAATGAATTAGCTTGAAGCAACACTACTGCAAAAGAATATTAAGGCTTATTCTCATTATAGCATAAATATTAGTGAATTTTGTATTTCCTACTGCACTGAAAGATTGTTTCACTCAATTTAACtataaaaaatgactaataatgatacaaaagattttgaattcacataaatgctgttctaaTGAATTTcaaatcaaagaatcctgacaCAAATGCATTCAGGATCAGCATATATCTGCAttttagactgatttctgaaggatcatggaATAATGGctgttaaaaatttatttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67946 lncRNA downstream 30193 17187456 ~ 17187794 (-) True G45897
TU67746 lncRNA downstream 895182 16320413 ~ 16322805 (-) True G45770
TU67717 lncRNA downstream 946879 16270902 ~ 16271108 (-) True G45753
TU67716 lncRNA downstream 948595 16268915 ~ 16269392 (-) True G45752
TU67715 lncRNA downstream 950445 16267183 ~ 16267542 (-) True G45751
TU67960 lncRNA upstream 18770 17243680 ~ 17246369 (-) False LOC122347244
TU67974 lncRNA upstream 188128 17413038 ~ 17414139 (-) False brinp3a.2
TU67995 lncRNA upstream 289728 17514638 ~ 17518605 (-) True G45930
TU68086 lncRNA upstream 582711 17807621 ~ 17808115 (-) True G45993
TU68093 lncRNA upstream 597626 17822536 ~ 17822735 (-) True G46000
XM_043240971.1 mRNA downstream 291619 16898685 ~ 16926368 (-) False brinp3a.1
XM_043240970.1 mRNA downstream 291619 16898685 ~ 16926368 (-) True brinp3a.1
XM_043240975.1 mRNA downstream 387726 16817378 ~ 16830261 (-) False rgs8
XM_043241263.1 mRNA downstream 408190 16807611 ~ 16809797 (-) True rgs16
XM_043242107.1 mRNA downstream 421835 16788677 ~ 16796152 (-) True rgs5a
XM_043242414.1 mRNA upstream 10880 17235790 ~ 17246386 (-) True LOC122347244
XM_043242382.1 mRNA upstream 157417 17382327 ~ 17414086 (-) True brinp3a.2
XM_043241039.1 mRNA upstream 328593 17553503 ~ 17555239 (-) True LOC122346427
XM_043241041.1 mRNA upstream 443277 17668187 ~ 17669843 (-) True LOC122346430
XM_043241931.1 mRNA upstream 518805 17743715 ~ 17774106 (-) False opa1
TU67944 other downstream 30669 17186689 ~ 17187318 (-) True G45895
TU67937 other downstream 387779 16816640 ~ 16830208 (-) True rgs8
TU67772 other downstream 853967 16361200 ~ 16364020 (-) False fam183a
TU67689 other downstream 1157521 16059893 ~ 16060466 (-) True G45731
TU67688 other downstream 1158220 16058968 ~ 16059767 (-) True G45730
TU67962 other upstream 82905 17307815 ~ 17308478 (-) True G45910
XR_006251188.1 other upstream 518805 17743715 ~ 17774107 (-) False opa1
XR_006251187.1 other upstream 518805 17743715 ~ 17774107 (-) True opa1
TU68751 other upstream 1419396 18644306 ~ 18645134 (-) True G46420
TU68756 other upstream 1489264 18714174 ~ 18717488 (-) True G46423

Expression Profile