RNA id: XM_043242427.1


Basic Information

Item Value
RNA id XM_043242427.1
length 2639
RNA type mRNA
GC content 0.45
exon number 10
gene id trim25
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 10039427 ~ 10048868 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctaaaaatattccACACCTGGCCTTTACACCTGGCTATCGGTACATTCCAAATTAGGAACGATCTCAGTTTGTGATATTTCGTCTATAGACAGCGCTTAGTTTAGGAGTTATTTGATAAGTTTCGTTTCTCCGCCTGCTAAGTTTCGTTTTCTCTGAGGGCGCAGTCGAGTGTGCTGTCAGTGAGCGTCGACAACCTGGACGTGTCACAATGGCGGAAAACATGTCTCTGCTCGGTCTCGAGGACGAGTTGACTTGCAGTATCTGTTTATGTCTATTCGAGAACCCGGTGAGTTTAATCTGTGGACACAGTTTCTGCGCCAACTGTCTCGAAGCGACGTGGAACGACACGACATCGTCTCTCTCCTGCCCTCAGTGCCGAATGGTGTTCTCAAGTAAACCTGAACTAAAGAAGAACACCGTCCTCGGCGCGGTGCTGGACGCCTACAGGATAAAAGCAGGTGTCTCTGAACCCGTCAAGGAACATTTTGAGGTGAAAAAGAAAGATCCAGATGCGATTAAATGCGACAACTGCATGGAAGCCAAAGCCGTCAAAACTTGCCTGACGTGTATGGCGTCTTACTGTGAGGATCATGTCAGGCCTCACCGGGAGAATGCCGTTTTTCGGGCGCATCAGCTCTCTGATCCTCTGCCAGATCTGATGGAGCGTCTCTGTTCAAATCATGGCAAACTGATGGAGTTCTACTGCAATCAGCACCAGAGCTGCATGTGCAGTGCCTGTCTGCAGGACGTGCATAAAGGCTGTGAGTTTGTCACGGCAGATGAGCGACGCTACAAGCAAAAGACTGATCTGACCGACAAACTCAACCTCCTTGATGTAAAAACGGACAAGAATCAGCAGGTTATCACACAAATGAAGGAGCAACAGATCAAATTAAagGACCTAGCTACAACCCGCAAACGTATTCTTGAGGCGGAATACAGGCAGATTAGAGAAATGATTGAGCGAGATGAGAAAGAAGCCATGCTGGCTATCGATAAGGAACAGGAGAAAGGTCAGATCAAACTGGTCTCCTTGATGAAAAAATTTAATGAGAACATCGAGAAGATGAGTAGGACCAAATCTGAGATCAACATTCTGCTGGACCAGTCACAGTCACTAGCGTTCTTAAAGGCCTCCGTGGATTTGCCCTCGGTGGTAAATTTTGAGCCTCATAACCCCCGTATGAACGTGGAAGGTAAAGAGGTGATAGCTTATCATTCCACTGCAGTTGCACTAAAGGAGTGGATCACCAAATTAATGGAGAAGCCGTTAGAAAACAGAATCTGTGTACTTAAACCAGGTCTAGGAATCAAATTCCCAGTAATCCCAAGTGATATTCCTGCCCTCCTGCCAAATCCAAATCCTATATGGATGCAAAAGGCACCAATTATGTGGCATGAACCTACACCTCATTTGAGACCTCCCAGTCCAAGCCGTGGCCTCAAGACCAAGCCTTCAGGaactaaacagaaaaatacCAgCAAGACAGCTAAAGATCAGAAGGATCACAAAGAGCACAAAGACCAGAAGCCAAACAAAACTAGGAATCCCTCTAAAGGAGCAAATCCTGTTTTCTCCAAAAGCATGGAAAACTTGCTTGACATCACAACTAAAACTGTAGACATGCCTGACATAAATTCACTTGCTATTTCACCAGCCGTGCAAAACTTTGTTAAACGAAGTGACCTTCTGAAATGTGGCGCTGTCCTCAATTTTGACGTCAGAACAGCTCACAAACGGATCTCGCTGTCTGAAAACAACACTAAAGCGACAGTCTCGGACGACCCAGCTCATTACCCGGATATCCCCCTTCGCTTTTCCGTCTGTTCCCAGGTGCTCTGCACGAAGGGTTTCTCTCAGGGCCGTCATTATTGGGAGATCAAAATGAGCAGTAACAACTTCTGCGGATTGGGACTTGCATATGGAAGAATTGATCGCAAAGGTCCCTCTAGCCGGCTGGGGCGCAATGCAGACTCCTGGTGTGTGGAGTGGTTCAACGTGAAGCTTTCTGCGTGGCACAACAGCGTTGAGACCGTGCTGCAGAATCCCAACCCAAGCCGGGTGGGCGTCTTGCTGGATTGCGATCAGGGAAGTGCGACGTTCTATACTGTGCAAGACCGGGCCTACCCTTTCCACACTTTTGTCTTTCCTTTCACTGAGGCTGTGTATCCCGCTTTCTGGATCTTCTCAAATGGCTCCTCTGTCTCTTTGTGCAAGCTCAGCAACTGAAAGTCCAAGTGAGACTCATTTTACTCAACTGATGTTTtatctgtggaacacaaattaagatatttgtattatttagtcATCTCTGTGTCCGTTCAGTAAGTTCACACAACAAGAATGTGTGAAATCTTTATGGCTTTCGATAGATGGCCAAAAATATTATCTTATCAATaatatcttcatttttgttCCACAGATGATCAAAAGTCTTTTGAAACGGGTTTGAAATGACAGGTGCATAAGTAACATTTTTGGGGACTAATATAGGCAAGATtaaagcaaataatttttttattctaatttaggTGTGTTGTGAATGTCTTAAAGCAGTTTTGATCTATTAATAAACTGTattcttaatgatttttaatgatgaccaaaaaaataaataaataaaagatggaTGACTGA

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65251 lncRNA downstream 21359 10013936 ~ 10018068 (-) True G44065
TU65221 lncRNA downstream 90442 9945667 ~ 9948985 (-) True anapc11
TU65222 lncRNA downstream 90442 9945667 ~ 9948985 (-) False anapc11
TU65223 lncRNA downstream 90442 9945667 ~ 9948985 (-) False anapc11
TU65220 lncRNA downstream 96227 9942615 ~ 9943200 (-) False G44040
TU65294 lncRNA upstream 35133 10083990 ~ 10084275 (-) True G44095
TU65311 lncRNA upstream 49123 10097980 ~ 10098179 (-) True G44105
TU65386 lncRNA upstream 90048 10138905 ~ 10145147 (-) True cd7al
TU65412 lncRNA upstream 189562 10238419 ~ 10238618 (-) True G44167
TU65413 lncRNA upstream 193353 10242210 ~ 10242509 (-) True G44168
XM_043242033.1 mRNA downstream 11747 10025453 ~ 10027680 (-) True c6h17orf67
XM_043242274.1 mRNA downstream 90439 9947802 ~ 9948988 (-) False anapc11
XM_043242275.1 mRNA downstream 90449 9947802 ~ 9948978 (-) False anapc11
XM_043242276.1 mRNA downstream 90449 9948043 ~ 9948978 (-) False anapc11
XM_043241799.1 mRNA downstream 257444 9778250 ~ 9781983 (-) True LOC122346913
XM_043241684.1 mRNA upstream 52626 10101483 ~ 10106808 (-) True utp6
XM_043240990.1 mRNA upstream 74958 10123815 ~ 10126741 (-) True tefm
XM_043240992.1 mRNA upstream 92890 10141747 ~ 10145168 (-) False cd7al
XM_043240987.1 mRNA upstream 97367 10146224 ~ 10152064 (-) False znf207b
XM_043240986.1 mRNA upstream 97367 10146224 ~ 10152064 (-) True znf207b
TU65247 other downstream 11792 10025578 ~ 10027635 (-) False c6h17orf67
TU65030 other downstream 767122 9271418 ~ 9272305 (-) True G43900
TU65029 other downstream 768505 9269188 ~ 9270922 (-) True G43899
TU65026 other downstream 772103 9266002 ~ 9267324 (-) True G43896
TU65020 other downstream 778182 9260616 ~ 9261245 (-) True G43890
TU65385 other upstream 92754 10141611 ~ 10145147 (-) False cd7al
TU65678 other upstream 661188 10710045 ~ 10716741 (-) True G44358
XR_006251151.1 other upstream 1006178 11055035 ~ 11069458 (-) False brdt
XR_006251152.1 other upstream 1006178 11055035 ~ 11069457 (-) False brdt
unassigned_transcript_1087 other upstream 1923623 11972480 ~ 11972551 (-) True trnag-ucc_1

Expression Profile