RNA id: XM_043242441.1


Basic Information

Item Value
RNA id XM_043242441.1
length 4496
RNA type mRNA
GC content 0.50
exon number 23
gene id wwc3
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14133341 ~ 14170086 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATGAAAGATGGTAGATAGAGTCAAACATGGAGGATCGACGCGCAGAGTCATGAGAGCGCCGCAAAACTTTTTGGAAAAGGTGGATGCAGGACTGCCTGTGTCGATTTGACCCACGCTCGTTTCTTCGTTGTGAAGTTTTCCGTTTCCGAGAGCCGATGGGAGTTCAGCATTTGTAATGCAGTAGAAAGTTGCGATATATTTGTTGTTGGAGCAAAGGCAGGGGGTCAGACCCCCCTAGCGTCCCAGCAGCGCTATGCCGTGGGTGAGCAGCTGTAAGCGGAGAGAGAGCTCGGAGCTGCCGCTGCCCCCGGGCTGGGAGGAAGCCAGGGATTACGATGGCAGAGTTTTTTATATTGACCACAACACTCGACAAACTTCATGGATCGACCCCAGAGACAGGATTACCAAGCCCCTGACCTTTGCCGACTGTGTGGGGGATGAGCTTCCTCTGGGCTGGGAGGTGGTGTATGACCAGCAGGTGGGCGTCTACTACATCGACCACATCAATAAGACGACCCAGATAGAGAACCCTCGCACACAATGGCGTCAGGAGCAGGAGCGCATGTTAAAAGAGTACCTGGTGGTGGCCCAGGAGGCTCTCAATGCCAAGAAAGAGATGTATCAGATCAAACAGCAAAGACTCGAGCTGGCTCAGCAAGAGATGCAACTCTTTAACCAGCTCACTCAGGATGACAACCGTTCCATCACCAGCTCTCACTCGGGTTCCtcttcaaatgcaaaatatgacCCTGACCAAATCAAAGCGGAAATTGCCTGTAGGCGTGAGCGGCTCTCCAGACTCAAACAGGAACTGGCCCAGATGAGACAGGAGCTGCAGTACAAGGAAATGGGAGTGGAGACCCTACAGGAAATTGACCGGAAGATGTCAAGCAGTCAGACCAATTACAAGTTAGATGAAGCGCAGGCCATCTTCAGCGAGCTCCGCAGCATTAAAAAGGCCATCAGCACCGGCGAGAAGGAGAGGCAGGACCTCATCCAGAGCCTGGCCAAGCTGACGCTGAACTTCTGTGACTCCATTAATGAGGTGGCCAACAGTTCAAATACCCTCGGTGACTCCTGTAGTGTACAACAATACACAGACACTGGCTGCCAGACTGATCTGATGGGAGAGTTTGGCGCGCAGGAGTCATCAGTACTTGCTGACAAAGTCAAGCTCAGTTGGCAGTACGAAGAGGCTAAGAAAAAgatgtCCAGTATTCAGCATCAGTTGGCCCAGTTGGACAGTGAGAGCTGGTCTGGACGCGCTGAGGCCGATCGGGATTGGGACTGTCTGCAGCTGCTGAGGGAGAAGGAGGCTCTGCTCCAGGAGATCACTCTGCTCAGCCAGCAGCAGCACTCCCCAGACACACTGCTTCAGCTGCAGGAGGAGAAACACAGGCTGGAGGAGGAAGTGCAGAAAGCCCAGAGCATCCAGAGTCAGGGAGCCAATCAGAGgATATTACAGCAGGAGAAGAGGAATGTTCTTATGAGGCAGCTTGAGGAAGCCACCCGTATCACCACCTATCTGCACTCTCAGCTGAAGAGCCTCTCAGCCAGTAACCTGACGGTGTCCTCCAGCAGTAGCCGTGGCTCTTTAGCCTCCAGTCGTGGCTCTTTGGCATCCAGCCGTGGTTCTCTCAGCTCCGTCAGCTTCACCGACATCTACGGCCTGCCCCAGTATGAGCGAACAGAAGGCAGCTCTGACGTTCTGGACCCATCTTTCCGCTACCTTCTGCCCTTGGAGACCCACAACAGAGACAGTTCAGCCTTCGGGCCAAAGCGCTCCCACGACACACCACAGTCTCTCACATCCCTCTCCTCTCGGTCCTCGCTTTCCTCGCTCTCCCCTCCCAGCTCCCCCATGGACACCCCCTACCACTCTGCCCCTCAGGACTGTCCTCTGGCCCAGATGACAGAGGAGTACATGGAGGTCGCCAGCAGGGGTCTGTTGGCTGAAGGACTTCGGAATCAGACTCAATCCCAGCAGCACACTACTCTTCCTGGGGAAGGGGAAGTGGGAATCCCAGCCTCTGCACACCTCCTGGAGGGGAAGAGCCATAGAGATGGAGTTCTCCAAGGAACGCACAGCTCATCAGGAGTGACCCTGCGCTGTAAAAGTGCAAGTAGGACCAGCAGAAGAGCAAGACGAGTGTCTGCAGGAGTAAATGAAGATGTCTTGGCAACAGACAGTGGGGTGTTTGAAGCCTGGAGCAGAAGAACAGAGGAATCAGAAGAAGTGAGTTTTACTCAAGATGTCCCAGCCTCAGATCCAGTTCAGATTCAGATTGGTCTTCTATATGATTCGAATGGCATGTTTTTGCTGCTGCATGTCCTTCAGATGAGAAATTTAAGCAAGGCCACCGTTAGAGACGGATGCAAAGTATTTGTGAAGGTTCATGTTCTCCCGGTGGACTCCAGTCGGCCCTGCACATATTACTGCTGTAAGGCCCAGGAGCCTCAATCTCTTCTCAGCTTTAATGAGGGCTTCCGAATCCCTCTGAGCGCCGGCGGCCCGGGGGCCCATGCTTTACAGTTAAACCTCTGCGCTGTAGGACCCCTTGCCCAGGAGGAGCTACTGGGCTCTGCTCAGGTCTCGCTGACAGACTGTGCAGGCAGCACTGAAATGATCTTCCAGTGGCTTAAAGTGAATATCCACAGCGCGGAGAACCACAGGCCTGAGCACGGCCGCCTCAGTCAGCCCAACCGCATCATGGATGAAGACGAGAACGAAGGCAAGCTTGAGGTGTCTGTGGTGACTCGTTTGGAGGAGATGAAGAAAGAGTTACAGAGGAGTGAAGAGGAGCTGGAAAGGAAGGAAGAGCAAGAAGTCGTTTCTGAGAGGAGTTGGCAGGCTGAGTCAGTGGACAGCGGCTGCAGTAACAGTACAGCGTTTGTTATAGCCTGTCCTGAGAGTCTCTGCGGTGAAGGCATCTGCATGACCTCTGGGAGACGCTGTCTCCAGCCTGCAGAGAGAAGTCCAATATTGAAGgtgGACAAGGCAACCAACACAGAAGGTGTGTTTCCGGAGCCAATGAGAATGCGGCCGAAAGAAAGGACAGGGCGTTGGGGTCACAGCTCGCCGTTCATGCGCAGCAGCACAATAGTCAGATCTCAGACATTTTCACCTGGAGCACGCAGTCAGTATGTCTGTAGGTTGTACAGAAGTGACAGTGATAGCTCTACTCTACCAAAGAAATCCCCCTTCATCAGAAACACTCTAGAGCGACGAACCCTGCGATATAAACAGCAGTCCCACCGCTCCACTCTGGCTGAGCAGCCCACACGTACCTCTCTGGACCTGGAGCTGGACCTCCAGGCCTGCCGTACACGACAGAGGCAGCTGAGCGAGGAGCTGGCCGCGCTGCGGGAGCTCAAACTGAGACTGGAGGAGCCCATGCAGGGCCCCCGCGGGCCCACGGACCTCCCTCATTGGGCACTGCGGGATGAGCGTTTCCGAAACCTGTTACGTGAAGCCCAGAGACAGGCCAAGCAGACCAGACAGGAGCAGAGGCAGGAGGAAGCTGCTGAAAGGAGGTTGCGAAAGGCCTCCAAAGAGGTTTTGCAAATGAGGGGCCAGAGCCACAAAGAGCCCCTCCCTGTGCAGACGTTCAAAGAGAAGATGGCTTTCTTTACTAGACCAAGATTCAACATCCCGCCTCTGCCAGCCGACGACGTGTGAGCGCCCCCTGTACGCCACACTATCAAATATGAAGaatctgtctgttttgtttttttgtattcatgccCATGAAGTAATTAGAACAAAAACGTAGTTATTTCAGCACAGAGATTAAAAGTTATTTGATATGCAACATTCGAACAACAGAAAGCTGTACAAaacaagcgtgtgtgtgtgtgattgtgagtgtgtgtgtgtgtgtgtgtgtatgcgtgcgtgcgtgtggtAGTACTAATGAACACGTacacttatattttatgtaattattgaCATCTTGGCAATATTTCCTGCTTGTTTAAAGGAggaaataactgttttataaaagaACAAAGCATCTTTTTACTCCTGTACGATGTACTTCTGATATTTCGATGTCTACGCTTACTTAAGGCTGGAAGACGGGAACAAAGTCAGTTTAGACAAATTCACTGTACTGTAACTTATTTTATAGTACTTTTCCttgaaggaaataaaaatgctccctgctttttaatgtattttataaagctTAAAACAAATAGCACTTACTGTAAGTGTTTTTGACGTACAGTAGAATGGAAATTTTGGCTGATTTTGTTTCTGTTACCTGATTCTTTAAagttatttacttaaaatgtcacttttttttgatccacttttgTCGCAGTTGTCATTGTCCCTTGTGCTGTTattctattaaaattattaatattaattattacttgTACTTTTCAATATATagacaaatataattttgtatgcTGTCTGTAAAAATGTCTGCAGTGTTACCTTTCTTATGaagataaaagcattaaaaaacatgaaagtgcAGCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251242.1 lncRNA upstream 2263 14129347 ~ 14131078 (+) True LOC122347615
TU66741 lncRNA upstream 2343 14130488 ~ 14130998 (+) False LOC122347615
TU66727 lncRNA upstream 4997 14016435 ~ 14128344 (+) True G45084
TU66717 lncRNA upstream 136375 13992745 ~ 13996966 (+) True G45075
TU66694 lncRNA upstream 272732 13860255 ~ 13860609 (+) True G45070
TU66775 lncRNA downstream 44125 14214211 ~ 14215282 (+) True G45112
TU66744 lncRNA downstream 93515 14263601 ~ 14286676 (+) False G45095
TU66747 lncRNA downstream 113771 14283857 ~ 14286676 (+) True G45095
TU66787 lncRNA downstream 127545 14297631 ~ 14298231 (+) True G45119
TU66785 lncRNA downstream 127683 14297769 ~ 14298002 (+) False G45119
XM_043242270.1 mRNA upstream 12159 14117791 ~ 14121182 (+) True cldn34a
XM_043242269.1 mRNA upstream 12159 14117792 ~ 14121182 (+) False cldn34a
XM_043242266.1 mRNA upstream 16819 14097859 ~ 14116522 (+) False shroom2a
XM_043242906.1 mRNA downstream 22499 14192585 ~ 14197319 (+) True ttc22
XM_043240965.1 mRNA downstream 325381 14495467 ~ 14523316 (+) True jak1
XM_043242955.1 mRNA downstream 538422 14708508 ~ 14712351 (+) True LOC122347575
XM_043242741.1 mRNA downstream 610840 14780926 ~ 14790192 (+) False LOC122347452
XM_043242740.1 mRNA downstream 610840 14780926 ~ 14789313 (+) True LOC122347452
unassigned_transcript_1264 other upstream 52337 14080933 ~ 14081004 (+) True trnag-ucc_2
XR_006251224.1 other upstream 154336 13972173 ~ 13979005 (+) False meltf
TU66465 other upstream 723429 13394229 ~ 13409912 (+) True G44887
TU66125 other upstream 1023975 13108735 ~ 13109366 (+) True G44645
TU66063 other upstream 1051222 13080610 ~ 13082119 (+) False smx5
TU67192 other downstream 1066125 15236211 ~ 15238200 (+) False pomgnt1
TU67233 other downstream 1188775 15358861 ~ 15459386 (+) True G45419
TU67277 other downstream 1394895 15564981 ~ 15566668 (+) True G45448
TU67943 other downstream 3016622 17186708 ~ 17187308 (+) True G45894
TU68129 other downstream 3825105 17995191 ~ 17996717 (+) True G46022

Expression Profile