RNA id: XM_043242456.1


Basic Information

Item Value
RNA id XM_043242456.1
length 2390
RNA type mRNA
GC content 0.38
exon number 12
gene id slc35d1a
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 16571144 ~ 16578063 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGCGGAAGTTCAGAGGCGTCAACGTGGGGAGGAAGAAAGGCGCTCCGTTCAGAATGAAGCAATGTGAGCCAAGGaatgaagcggctgggatggcGGACCAAACGTTAACGGTTCCCCTCTTCGATATGTGTTGGCATTGGTCAGATGCTGGCAACAGTAGTTGTGTTACGGGTGGGAAAGGCCCTCCGGGTGATCACCTTTCCAGAATTTGATGGTAGCATACCTAGGAAGACATTTCCGCTACCTCTTCTGTATGTTGGAAATCAAATAACAGGACTCTTTGGGACAAAAAGACTTAACCTGCCAATGTTTACAGTGTTGAGGAGGTTTTCTATCCTCTTTACAATGCTGGCCGAGGGTTTCTTGTTAAAGAAGAAATTCTCCCGGCCAGTTCAGCTGACAGTATTTACTATGATTATAGGGGCCTTTGTAGCTGCAAGCGCTGACTTGGCTTTTGACCTGCAAGGgtatgtgttcattttaatgaacGATGTCTTAACTGCTGCCAATGgagcttttgtgaaacagaaactTGACTCTAAGGAGCTGGGAAAGTATGGCCTGCTCTATTACAATGCTTTATTTATGATTCTTCCAACACTGCTATTAGCGCATGTCACAGGAGATATGGATAagGCTTTTGAATACGAAGGCTGGTCAGATGTGCTTTTTATAGGTCAATTCATTCTCTCTTGTATAATGGGGTTTGTTTTAATGTACTCCACTGTACTTTGCACTCAGTATAACTCTGCGCTAACTACTACCATCGTTGGCTGCCTAAAaAATATATTAGTGACGTATATTGGAATGGTGTTTGGAGGAGATTACATTTTCTCATGGACTAACTTCATTGGTCTGAACATCAGTATTGCTGGCAGTCTGGTGTATTCCTACATTACCTTCACAGAGGAACAGACCACCAAACAGAGCGAGAATGCCAACAAGCTAGAGGTCAAAGGGAAAGTGTCCGTATGACCGGTGCTTTGATGGACGTTCGTAATGCGCAAGGCTGTATTTATGAGTTCTTGTATTTCTTGCAAGAGTAAGAAGTCACtcctaagttttttttttttattgttattttatgaagattttatgatgattattattatatgaaggTACAGCAGATGTTGGAGGGGCATCGTCTCAAATGAAAGATTTGGTCACGTTTCAAACATACTGGAACGTCATTATTCCAGAGTAAATATTTGCTTGTTAATTTTCACTTCTGTTAAGAAGTGGTGCCTGTGTTACAAACCGATGGTTGGTGTCCTGCAATGTTGGATGCTTGCCACAAACTGGGAATGAGGACTGTCATTAGTGTTGAAACGCCTGCTTTATCGTCTGTTGAATAGTACTTTTAAAGATGGGTTTTAGTCAGTgaggctatttatttttatgagagcTGTTTTTTATTGCCAAGATTGTGAATTGGGTTTTATTGTTGGGAAAGGTTTATTCTAGCTGCAAAAAGGAAGTTACGTACATCGTTTAAGTAGTCTTTTGACAGTTCTGGTACCCTGTTACACAACTTGAGTTTGACAGAAATGCTCCTTCAAACTCTGAATGCTAAATGGAAAGGGAGTGTTCGAGTGTAAAATAAGGTACTTGTTAAGTAggtgttttatttgaatcttTTGATAACAAGCTTTAAAGAACGATATTTTGTGTTAAGCGTTCTCAGTGTTACACAGTGTTCAACTGGACTGATTATTATAactgctttttgtatttttttgtatttgggAATGGGATGCAGTAACTGTTTTTTTACTGATGGAATCACGGTAAAGGAAAAAATAGTGTAATTGCACTTTAACAGTTTACAGACTTTCTCATTCGTCAGTGATTTAAAATCGATGTTagtttttgcaaaaacattgtaatacaatatacacaaacatttcagtATTTTGACTTGTCTCGTTTAAAGTTGCCGTGTTTGGGTGAATCGGAAAGAAAGGAGAGAGTCTGCatttatgtctgtgttttttacaaatgcaaaatgctagttttcttgttttatacTTCTTTTATAATCTGCGGCTACTGAATGAATGTCTGTTTTCATTCATGCATGCCACTGATTGGAACATTGCTTAGAGATTCAAATTTTACGGATGATTTccatttgtgttcatttttcaCTGATGACATGTTGCTGTAGAAGTATTTTATGTATTCAACTTGTgcttttaagtatatttttcttttcacgTTTTTTAGTGAGTTCAGTTTAAGTGTTTCTTTATCAAATTCATATCTGCAAATTCTCAGTCATTGTGTCAGTGAGAAACGGAAGtgtgtaacatttaaaatacctCAGCTCGAAGAATCTGTATTTCATTTTCTGAtgttaaccaaaataaaaatctttttcatttttaa

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67746 lncRNA downstream 248339 16320413 ~ 16322805 (-) True G45770
TU67717 lncRNA downstream 300036 16270902 ~ 16271108 (-) True G45753
TU67716 lncRNA downstream 301752 16268915 ~ 16269392 (-) True G45752
TU67715 lncRNA downstream 303602 16267183 ~ 16267542 (-) True G45751
TU67666 lncRNA downstream 452558 16058245 ~ 16118586 (-) False G45709
TU67946 lncRNA upstream 609400 17187456 ~ 17187794 (-) True G45897
TU67960 lncRNA upstream 665624 17243680 ~ 17246369 (-) False LOC122347244
TU67974 lncRNA upstream 834982 17413038 ~ 17414139 (-) False brinp3a.2
TU67995 lncRNA upstream 936582 17514638 ~ 17518605 (-) True G45930
TU68086 lncRNA upstream 1229565 17807621 ~ 17808115 (-) True G45993
XM_043242977.1 mRNA downstream 683 16563950 ~ 16570461 (-) True mier1a
XM_043242978.1 mRNA downstream 703 16563950 ~ 16570441 (-) False mier1a
XM_043241234.1 mRNA downstream 182730 16384336 ~ 16388414 (-) True dmrt2b
XM_043242527.1 mRNA downstream 207125 16361167 ~ 16364019 (-) True fam183a
XM_043242526.1 mRNA downstream 207125 16361168 ~ 16364019 (-) False fam183a
XM_043241680.1 mRNA upstream 25239 16603295 ~ 16609663 (-) True serbp1a
XM_043241681.1 mRNA upstream 25239 16603295 ~ 16609662 (-) False serbp1a
XM_043241042.1 mRNA upstream 32224 16610280 ~ 16617199 (-) True hsd17b7
XM_043242696.1 mRNA upstream 40516 16618572 ~ 16647615 (-) False ddr2a
XM_043242694.1 mRNA upstream 40516 16618572 ~ 16647615 (-) False ddr2a
TU67772 other downstream 207124 16361200 ~ 16364020 (-) False fam183a
TU67689 other downstream 510678 16059893 ~ 16060466 (-) True G45731
TU67688 other downstream 511377 16058968 ~ 16059767 (-) True G45730
TU67521 other downstream 965674 15603910 ~ 15605470 (-) True G45606
TU67455 other downstream 1240327 15328967 ~ 15330817 (-) False LOC122347580
TU67937 other upstream 238584 16816640 ~ 16830208 (-) True rgs8
TU67944 other upstream 608633 17186689 ~ 17187318 (-) True G45895
TU67962 other upstream 729759 17307815 ~ 17308478 (-) True G45910
XR_006251188.1 other upstream 1165659 17743715 ~ 17774107 (-) False opa1
XR_006251187.1 other upstream 1165659 17743715 ~ 17774107 (-) True opa1

Expression Profile