RNA id: XM_043242464.1


Basic Information

Item Value
RNA id XM_043242464.1
length 5142
RNA type mRNA
GC content 0.39
exon number 2
gene id lrrc8db
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 11415268 ~ 11424793 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACTGAATGTACCACAATAATGAGATGAGCGGGGACCCTTACATGTGCATAAAGCCCTCTCGGGTAAATGATTTGAATGTTTACCCTCACAGAAGTTGCCTCACTAAATGACATCCAGCCAACTTATCGGATCCTGAAACCATGGTGGGACGTCTTTATGGATTACCTGGGTGTGGTCATGTTAATGCTGGCCATATTTGCCGGGACCATGCAGTTAACCAAAGATCAGGTGGTTTGCCTTCCTGTTCTGGAATCGTTGGAGGACCAAACCCCTGTGGCCACGGAAAGGCCACCAGAGAAAGCTCTTGGCTCAGGGACAGGAGGAGGCCATGTGACATTGGCAGCTGCACCTTTATCAAGCAAAGAACAAACCGACAGTGTTGTCCAACACTTCCCACAGTCGTCTGCTGTCAAGCAACCTCAGCCCACGGGTTTACGAACAAATCTGGATTTTCAGCAGTATGTCTTTGTTAATCAGATGTGCTACCATGTTGCCCTCCCATGGTATTCAAAATACTTTCCATATCTAGCTCTCATTCACACAATTGTTCTCATGGTAAGCAGTAACTTTTGGTTCAAGTATCCAAAGACCAGTTCCAAAATTGAGCATTTTGTGTCTATTTTGGGCAAGTGTTTTGAGTCCCCTTGGACAACCAAAGCATTGTCTGAGACAGCCTGTGAAGACTCCGAAGAGAATAAGCAGAGACTGACTGGAGCCTCTACATTACCAAAGCATCTTTCAACCAGCAGTGAGGAGGGGAGTCCAAATCAGTCCACACCCATGCTTGCAAAATCTAGCATCAAGTTTTCTGCAGAGAAGCCAGTCATTGAGGTTCCAAGTATGACTATACTAGATAAGAAAGATGGAGAGCAAGCTAAAGCACTTTTTGAGAAAGTAAGGAAGTTCCGCACACATGTCGAAGACAGCGACATGATCTACAAACTCTATGTAGctcaaacaataataaaaactgtcaaattCATTCTGATTCTATGCTACACCATGACCTTTGTCACGTCCATTAAATTTGATCATGATTGTGAGCCTGAAATTAAGCATTTGACTGGATACGCAAAATTTAAATGCACCCATAACATGGCTTTCATGTTGAAAAAACTCCTTGTTAGCTACATTGTCCTCATTTTTGTTTATGGCCTGGTTTGCATATACACTCTCTTTTGGCTGTTTAGACGGCCACTTAAAGAGTACTCTTTTGAGAAGGTTCGAGAAGAAAGCAGTTTTAGTGATATCCCAGATGTGAAGAATGACTTTGCTTTCCTCCTACACATGGTGGACCAGTATGACCAATTGTACTCAAAACGTTTCGGTGTCTTTCTCTCAGAGGTAAGCGAGAACAAACTGCGGGAAATCAGCTTAAACCATGAGTGGACCTTTGAGAAACTACGGCAGCATGTGACTCGCAATGTGCAGGACAAGCTTGAGCTGCATCTTTTCATGCTCTCGGGAGTTCCCGATGCAGTCTTTGACCTCACCGATTTAGAGGTCCTGAAATTAGAACTCATCCCCGAGGCACGTATCACAGCGAAAATCTCCCAGATGATCAACCTCCACGAGTTGCACTTTTACCACTGCCCCGCCAAAGTCGAACAGACTGCGTTCAGTTTCCTCCGCGATCACCTCCGGTGCCTTCATGTCAAGTTTACGGACGTTGGAGAGATTCCCACTTGGGTTTACATGCTAAAGAACTTGAGAGAGCTGTACTTGGTGGGAAACTTGAACTCCGAGAATAACAAAATGATAGGATTAGAGTCCCTCAGGGACTTGAGGCATCTAAAGATCCTACATCTGAAGAGCAACCTTACCAAGATCCCGACTAACATTACAGACTTATCACCGCACCTGATCAAACTCGTGGTTCACAATGATGGTACTAAACTCTTGGTGTTGAACAGCTTGAAAAAGATGATGAACCTTGCTGAACTGGAGCTGCACAATTGTGAACTGGAGCGGATACCGCATGCAATTTTTAGTTTGACCAACCTGCAGGAATTGGACTTGAAATCTAACAATATCCGGACCATTGAAGAGGTCATCAGCTTCCAGCACCTCAAACGGCTTAACTGCCTCAAACTGTGGcacaataaaatcatttccaTTCCACTGTCCATAAGTCACGTTAAAAACCTTGAGTTCCTCTATCTGTCCCATAACAAACTAGAGACCTTGCCTACCACTCTGTTCAATCTTCTTAAACTGAGATACCTGGATGTTAGCCACAACTCCATTGTAGTGATTCCTCCAGAGGTGGGGTTTCTCCAGAATCTACAGcactttgccatcacaggaaacAAGGTAGAAGTGGTACCCAAGCAACTGTTCAAATGCACAAAGTTGCGTACCCTCTCCCTTGGGCATAATTGCATCTCATCGCTGCCAGAGAAAATCGGACAGTTGCTGCAGCTGACTCATTTTGAGCTGAAGGGGAACTGCCTGGATCGCCTGCCTGCACAGCTTGGCCAGTGCCGACTCTTGCGTCGAAATGCCCTCATTGTGGAGGACCACCTTTTCGATTCACTGCCCCTAGAGGTCAAAGAGGGCATAAGTCAGGAAACCAGTGCTAATTTTGCTAATGGAGTGTGAGTGTGGATCAGGAAAAATCTGGTAAGATGGTTTTCTGAGTGAAAAAAGACAGTGTTCACTACttctgtttgtttggttttcttttttaaattttttttgttgttttatccaGGACTGTGGGCATGAATGGATGTTCTATGTGTAAGGAATTAGTCCAGTATCAAAACTTATGTTAACATtcagtacctttttttttttttttttttgcacaggccAAAAATATGCGTAGTGCATAGAATTCCTGAGaattaatcaaatgtttgaGATGATTAAGCCTGTCTgcataggtttttttttattttttttaatttgcctaTGTTAAAGTGGAAGCATAATTCAGATCACTATTGTTTTTCGTTCATTTTCAGTAGCattcatgttaatattttcaccAGCTGTTATCCGCACAGTTTGCATCACATGCATTGTGTATTGTGGTGCAATCAATGATTGTATTCATTGTTAGGGAGAACCTAGAACAACTGACAATTAAACTGACATGTTAATCATAACTATTTTACTCAACTATACGTAAAAAAGTCTCCCTAGAGTCCCCTTTCGGGTTCAGAGAAAAGCGCACTAATTTAAGATGTTCactaaagtattttaaaaaatgaatgtttgcatTGATACAACGTTATCATATCTGTCCAAGATGCAATcaaacagtatattttatacCTCAGTTGCTAtctgttagattttttttttttgaaactgacAACTGTCCACGTATTCGATGTCTATTAACCAAAATACTGGGAACTGAATAACAATGTTTGTTGATGCAGTGTGATGCACATGATACCTTTAGTCTGTGcaagttttggcaataaaataGCCTTTTCCTTTCAATAGCGTCTTTTCATGTGGGTTACAGAAGTAATGCATAAGTTATATTGAGCTCATTTGACTTGTGCATGTTTTGTATATAACATCATATAATGGGACAGACCTGTAATGTGTATACACTGCATGGTCCTTAATGCTCAAAACCTCCAGTAGACATGTAGAGGTAAATTGCccttagaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacatcatatgtTAGCCTGTGACTGTGTATGACTATACCATCTGTTTTACTGTTAGCCCTTAGTGGCTAGTGAAAGTAATGAAAATGCTTGCATTGTGTGAATCACTGTTTTAAGTTACCCTGCTCTGTCTGTGCTGTGCATGCCCATGCAGTCAGCTTTTGAGGCAAACGCACAGAAAAGTGACTTGCCAGATGTTAGGTATCAATATTCACGCCAATGCTGGAATTACGTACTAGATATCCCTAACCTGAACATTTGTGCTTTCATTTTTCTTGACAAAGTCACAAACCTgtcaaactaattaaaacatcGTCAAGGTTTAATAGTCGTCTTACagttaaattaatacataacgaagacagaaattaaatttgagaAACTATCCCTTTTTAAGGAGCATGCtataataacataaattgtTTCAGCGTTCAACTCCCTAACCATTTCCTAATATTATTTTAACCCAATAATTTGTATGAAAAGGAAATGACAAGTAAAGGGTGTAATATTTAGCCGCGTTAAGTAATTGTTGACAAGGATTGAGTggtgtttgttttaaagcattcaatagttcattaaaatgttttcaataggCTGGATGGTAATTTACCTGTTGTGTACATGAATTGAGGATCAATAGTGATTGAATAATTTGGATAACGTCCAATAAATTatcataatttgtattattattattaaaaccaaTATTTTTGGGATCGACCTATTTGCATTTCACAGAAGAGTTGTCTAGTCATTTTGTGGAATCACTTCCCACACTGTGTTATATTTGTCCTACTGAAATGCTGCAGGGTCTGACCTGTAATCGGTATCTTTGTGACCCCTCAAGAATTTTGATGTCGTTCCAGATGAGGCTTGAAAATCATTTTCGATACATGTGTGTGACTAACAATAATTGCAACCACATGTGCATCTAAAGATgagtttcaatattttgagTGACTTCAAATTAGATTACTATATAGGTTTTGTACGATGTAACTATTTGTTGGTTCTGTTCGATGTTTGGAATGAacgtttgtttgttcatttacgTAGAGTTGTATTAATTTATGTTCCATTTCTATAACCTACTAATAGTTTTACTGCAATGTACCTGATTTGAAATGATTCCACCGTAAAAAGAAATAGATGTGTCCATTCAGGTACGTGAAACACTTACTGTTCATTCCGACCGAGTGCTTATTTTCAGAATaaaggaaatgtgttttatttttcagcaagCTACTTTAAGGTGTACTGCTATTCAGCCTTGAATGTAGCCTGATACTGCATCCCTTCATGGTTTAGCCTTTCCGTTTTGATGGAAAGGAGAATGAATTTAGTCTGCTTTGCTCCTAATcatgtgttttgtttgaaagGATGTTAAATTTGCaacttgcaatttttaatataataaaacattggaaaaaaaatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65799 lncRNA downstream 172762 11242277 ~ 11242506 (-) True G44460
TU65798 lncRNA downstream 173236 11241637 ~ 11242032 (-) True G44459
TU65796 lncRNA downstream 175804 11239119 ~ 11239464 (-) True G44457
TU65791 lncRNA downstream 177070 11237962 ~ 11238198 (-) True G44452
TU65789 lncRNA downstream 180172 11234875 ~ 11235096 (-) True G44450
TU65869 lncRNA upstream 3648 11428125 ~ 11428763 (-) True G44501
TU66210 lncRNA upstream 725357 12149834 ~ 12437749 (-) False G44705
TU66214 lncRNA upstream 725357 12149834 ~ 12198838 (-) False G44705
TU66215 lncRNA upstream 725357 12149834 ~ 12437749 (-) True G44705
TU66216 lncRNA upstream 725357 12149834 ~ 12437749 (-) False G44705
XM_043241285.1 mRNA downstream 650 11410062 ~ 11414618 (-) True znf326
XM_043241421.1 mRNA downstream 345809 11055035 ~ 11069459 (-) False brdt
XM_043240951.1 mRNA upstream 4397 11428874 ~ 11437103 (-) True lrrc8c
XM_043241801.1 mRNA upstream 25360 11449837 ~ 11481193 (-) False pkn2b
XM_043241800.1 mRNA upstream 25360 11449837 ~ 11481193 (-) True pkn2b
XM_043242736.1 mRNA upstream 271171 11695648 ~ 11708480 (-) False lmo4b
XM_043242735.1 mRNA upstream 271171 11695648 ~ 11708480 (-) False lmo4b
XR_006251151.1 other downstream 345810 11055035 ~ 11069458 (-) False brdt
XR_006251152.1 other downstream 345811 11055035 ~ 11069457 (-) False brdt
TU65678 other downstream 698527 10710045 ~ 10716741 (-) True G44358
TU65385 other downstream 1270121 10141611 ~ 10145147 (-) False cd7al
TU65247 other downstream 1387633 10025578 ~ 10027635 (-) False c6h17orf67
unassigned_transcript_1087 other upstream 548003 11972480 ~ 11972551 (-) True trnag-ucc_1
unassigned_transcript_1088 other upstream 548232 11972709 ~ 11972780 (-) True trnap-ugg_4
unassigned_transcript_1090 other upstream 1546606 12971083 ~ 12971154 (-) True trnap-ugg_5
unassigned_transcript_1091 other upstream 1547001 12971478 ~ 12971549 (-) True trnap-cgg_1
unassigned_transcript_1092 other upstream 1996170 13420647 ~ 13420718 (-) True trnaa-cgc

Expression Profile