RNA id: XM_043242467.1


Basic Information

Item Value
RNA id XM_043242467.1
length 2298
RNA type mRNA
GC content 0.50
exon number 14
gene id eif4bb
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19175866 ~ 19187427 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGCAACTTCTTAAACGTGTTTTTCGTTCTCGTGAGCGAGGGTGTGATGCTTGACTGCCTGCCCCCGTGACAAATCTTTGACGTCTTCATCCGGGACACTTCCACCAGACCACTCTCCAACATGGCGGCGTCAGCTAAGAAGAATAAGAAGAAGGGAAAGACCCTGACTCTGAATGACTTCCTTGCGGATGATAGCGGTGGCAATGCACCCCCCAGTTACCCCAGCGCTAAGACCACCAGCTGGGCAGACGAGACCGATGACTTGGATGGAGATGTCTCAACTTCCTGGCATACCGTGGAGGATACGTATCGAGCTCCTCCCATTGACCGCTCCATCCTGCCAACTGCGCCTCGTGCAGCACGGGAACCAAACATTGACCGCTCTCGGCTGCCACGCAGCCCACCCTACACCGCCTTCCTCGGTAACCTTCCCTACGACGTCAGCGAGGAATCCATCAAAGACTTCTTCAGGGGCCTTGCGATCAGTGCAGTACGTTTGCCACGGGAGCCTAATAACCCAGAGAGGCTTAAGGGTTTTGGCTATGCAGAATTTGATGATGTTGAATCCCTCTTGCGTGCTCTCAGTCTAAATGAGGAGAATCTTGGGAACAGACGGATCCGGGTGGATATCGCAGATCAATCCAATGACAAAGAGAGGGACAGTGGGTCAATGATGGGGCGAGACAGGGATAGAGATCGAGGTCGTGGGATGGACAGTGGCCCTGATAAGACAGATTCTGATTGGAGGGCACGGCCGAGCGGGGACCAGGATGATGGACCACGCAGAGATGATGGATATGGTGACAGGTCACGTGACCGTTATGAGTCAGACCGTTTCAGAGATGCTCCAAGACGTGATGATCGTTTTGACAGCGGCCGGGATCGCTTCAGTGGTAGAGATCGCTACGATGATAGAGAGCGAAGAGATCGCTTTGATGACCGAGACCGAAGGGATCGCTACGATGACCGAGGAAGCAGAGACTATGATCGTGGAGGTTTTGACTCACGTGGTGGTGGAGCATGGCGAGGATTCAGCAGTGGCTTCAGACGAGACCATGATGACCGGCGAGATGGAGATCGAGAAGAGCGTTCAGACAAGAGGGATGATGGACGAGAAGAGAGAGGCCCTCCACAGAGACCCAAGTTAAACCTGAAGCCACGGAGCATCCCAAAAGAAGAGGAACCGAGTGGAAGCTTGTCTCCACAGGGTAACACTGCTAATTCCAGCAGGGCTTCTTCTATATTTGGGGCAGCCAAACCTGTGGACACAGCCGCCAAGGAGAGAGAGGTGGAGGAGAGGCTGAAGAAAGAACAAGAACGACTCCAGAAACAGTTGGAAGAGGACAAGAACAGGGCTTCAGAGAGACGACCCCGAGACAGagACTCGAGTTGGAGAAATGAAGAACCGCCTAAAGAGCGTCAACGGACAGGAAGTGAATCCTCGCAACCTAAAGGATCTAGGTGTCAAGATGGTGAACATTCAGAGAATGAAGTCTTCAGTGGACAAGAGGATGAGCCGATCTCTCCTGCAAGTCCACCACCCTCTTCCAATCAGGGAGGACTTCCACTGAAAGTAATGCCTGCTCCTCCACCTAAAGAGAACGCCTGGGCCAAACGCAGCACAGGGGGTGGTGCTAATGAGAAGGAAGGACCTCCCTCAGCTGCCCCTAGCAACAAAAGCTCTCTTAAACCCAACAGGTCACCTGAAGAGCACGTATTGGATGAAAACCGGGTTGATGGCGTTCGAAGAGATAAAGTGGTGCCTcagggaagaggaggaggaggaggaggaggaggaggaggaggaggtgtaGTTGTTGGGAAAGGAGGGGGTCGGGGAAGAGGAGTTGACTGCCCAAACAAAGACAAACGGAGAGAACCTGCAGACAGCAGTTCAGCTCCGTAAGTAAGTATGCTGCCCTACTAATGGATGGAGACCAGGGAGAAGAAGATGGAGAGGAATGAACAATTAGCAAGGACCAGCTAACTATAGAAacacagaacagaagaaaaaaaagcaactgaATGATCAAATGAGGGGTTAAATTATGTGTTTCCTCATGCTGAGGGAGAGGCGTATCTTAAGGGGATGATGGCCAACGTACCCACAATACTGTTCTTGTTCACGTTTATGGAAATTTATACTGGTGTTCCTAAAACTGGcccattttaattaaagataaaaataaatcaaatcagtgCAGTACTTAgataaatgcattcatacatGTAGACATTTGAAAATCATTGTTAATTTGAAAGtcattgttataataaaaaaaatgtaagatacTGTAA

Function

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0000166 nucleotide binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251202.1 lncRNA downstream 24172 19149746 ~ 19151694 (-) True LOC122347223
TU68847 lncRNA downstream 127030 19044704 ~ 19048836 (-) True G46477
TU68845 lncRNA downstream 127120 19044628 ~ 19048746 (-) False G46477
TU68850 lncRNA downstream 127120 19044704 ~ 19048746 (-) False G46477
TU68844 lncRNA downstream 131997 19043616 ~ 19043869 (-) True G46476
TU68898 lncRNA upstream 25213 19212639 ~ 19242811 (-) True G46509
TU68953 lncRNA upstream 206051 19393477 ~ 19397730 (-) True G46540
TU68954 lncRNA upstream 206051 19393477 ~ 19397405 (-) False G46540
TU68955 lncRNA upstream 206051 19393477 ~ 19397730 (-) False G46540
XR_006251216.1 lncRNA upstream 418936 19606362 ~ 19607056 (-) True LOC122347383
XM_043242479.1 mRNA downstream 2695 19153039 ~ 19173171 (-) True tns2b
XM_043242380.1 mRNA downstream 26135 19129212 ~ 19149731 (-) True vdrb
XM_043242378.1 mRNA downstream 26136 19129212 ~ 19149730 (-) False vdrb
XM_043242376.1 mRNA downstream 51890 19113680 ~ 19123976 (-) False hdac7b
XM_043242374.1 mRNA downstream 51896 19113678 ~ 19123970 (-) True hdac7b
XM_043242480.1 mRNA upstream 1069 19188495 ~ 19190509 (-) True LOC122347293
XM_043242848.1 mRNA upstream 33867 19221293 ~ 19232798 (-) True stat2
XM_043242850.1 mRNA upstream 33867 19221293 ~ 19230734 (-) False stat2
XM_043242849.1 mRNA upstream 35699 19223125 ~ 19232799 (-) False stat2
XM_043242852.1 mRNA upstream 45845 19233271 ~ 19236817 (-) True apof
XR_006251201.1 other downstream 26136 19115061 ~ 19149730 (-) False vdrb
TU68851 other downstream 119735 19055146 ~ 19056131 (-) True G46478
TU68756 other downstream 458378 18714174 ~ 18717488 (-) True G46423
TU68751 other downstream 530732 18644306 ~ 18645134 (-) True G46420
XR_006251187.1 other downstream 1401759 17743715 ~ 17774107 (-) True opa1
TU68985 other upstream 365893 19553319 ~ 19555931 (-) False tsfm
TU68987 other upstream 365893 19553319 ~ 19555931 (-) False tsfm
unassigned_transcript_1266 other upstream 479008 19666434 ~ 19666506 (-) True trnaf-gaa
TU69304 other upstream 655618 19843044 ~ 19847398 (-) True tspo
XR_006251194.1 other upstream 908963 20096389 ~ 20102458 (-) False srsf3a

Expression Profile