RNA id: XM_043242483.1


Basic Information

Item Value
RNA id XM_043242483.1
length 1309
RNA type mRNA
GC content 0.49
exon number 11
gene id sumf1
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19560562 ~ 19568042 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGCAACCGCTCCACCACCTgcaaaggtcagaggtcatgacAAGCTGCAGCTACGCAGGTCAGCTGACTGGTCACGTGACTCTTTCCGGACGTGCTGTTCCCCGTGTTCAGACCTGACGCTGGACATGGCCTTAACATTGAAcgtttctgtcattttatttctctgcattTTATCAGTGCGTAGTGCTATAGGCGACATCGTTCTCGAACAGCAGTCGTCAGAGTCCCGAAGCACGGATTGCGGTTGTCAGGGTCTGAAAAGAGATGTTACTGTTGATGTAAGTGATGAGAACAAACTGGAACATCACGAAGATGCAAATATATACTCCAGAACAGCAAACGAAAGTCCACACGAGACAGAGTATGATATACGCAGTAAGCTGGTGCTGCTGCAGGGAGGTTGGTTTATGATGGGAACAGATGACCCAGGAATACCACCGGATGGAGAAGGGCCGCAGAGGAGAGTGAGATTGGACCCTTTTTACATGGAAGACCATGAAGTCACAAACCAGCAGTTCCAACACTTCACCAACCAGACAGGATACACCACAGAGGCTGAACGTTTTGGAGACTCCTTTGTTTGAGGACTGCTGAGTGACGATGTGAAGGGCACTCTGTCACAATAGGTGGCTGCTGCTCCTTGGTGGTCGCCAGTGAAAGGTGCAGACTGGAGACACCCAGAAGGACCAGATTCAACCATAGAgcaaagGATGAATCACCCTGTTTTGCATGTGTCATGGAGTGATGCACAGGCGTACTGTCACTGGGCCAGACGCAGACTTCCTACTGAAGCTGAGTGGGAGATGGCCTGTAGAGGAGGACTGCAAGATAGGCTGTACCCATGGGGAAATAAACTACTGCCCAGAGGGCAGCACTATGCTAACCTTTGGCAAGGTGATTTTCCTAACCGCAACACAGCAGAGGACGGCTTTGCTAACACATCACCGgtgatgtcatttcctgcaAATGGCTTTGGGCTGTATGATATGGTGGGAAATGCATGGGAGTGGACGGCAGACTGGTGGAATGTGCATCACTCTACAGAAGCCAAGCAGAACCCTAAAGGACCAGAAACAGGGACAGACAGAGTCAAGAAAGGAGGCTCCTACATGTGTCACAAGtcTTACTGCTACAGATACAGGTGTGCAGCCCGTAGTCAAAATACTCCAGACAGTTCTGCCTCTAATCTGGGCTTCCGCTGCGCTGCTGACGCTGATCCATGACCTCAAACATGAGGTCTATCACTGTCATCACATGAAATCAAGAatgattgtgtgtttttatgtaaataaatccatttgtaaaatg

Function

GO: NA

KEGG:

id description
K13444 SUMF1, FGE; formylglycine-generating enzyme

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68953 lncRNA downstream 162832 19393477 ~ 19397730 (-) True G46540
TU68955 lncRNA downstream 162832 19393477 ~ 19397730 (-) False G46540
TU68954 lncRNA downstream 163157 19393477 ~ 19397405 (-) False G46540
TU68898 lncRNA downstream 317751 19212639 ~ 19242811 (-) True G46509
XR_006251202.1 lncRNA downstream 408868 19149746 ~ 19151694 (-) True LOC122347223
XR_006251216.1 lncRNA upstream 38320 19606362 ~ 19607056 (-) True LOC122347383
TU69118 lncRNA upstream 223600 19791642 ~ 19792328 (-) True G46658
TU69107 lncRNA upstream 233201 19801243 ~ 19802266 (-) True G46647
TU69142 lncRNA upstream 266028 19834070 ~ 19838047 (-) True G46673
TU69300 lncRNA upstream 273437 19841479 ~ 19842967 (-) False tomm6
XM_043242162.1 mRNA downstream 4620 19553317 ~ 19555942 (-) True tsfm
XM_043242164.1 mRNA downstream 8705 19547029 ~ 19551857 (-) True myl6
XM_043242163.1 mRNA downstream 8706 19547029 ~ 19551856 (-) False myl6
XM_043242213.1 mRNA downstream 59477 19486992 ~ 19501085 (-) True pfkmb
XM_043242212.1 mRNA downstream 62301 19486992 ~ 19498261 (-) False pfkmb
XM_043242557.1 mRNA upstream 41758 19609800 ~ 19612454 (-) True si:dkey-197j19.5
XM_043242485.1 mRNA upstream 45062 19613104 ~ 19619818 (-) True uroc1
XM_043241808.1 mRNA upstream 52115 19620157 ~ 19621083 (-) True chchd4b
XM_043241807.1 mRNA upstream 54513 19622555 ~ 19627477 (-) True sec61a1
XM_043241744.1 mRNA upstream 65137 19633179 ~ 19637946 (-) True ip6k2b
TU68985 other downstream 4631 19553319 ~ 19555931 (-) False tsfm
TU68987 other downstream 4631 19553319 ~ 19555931 (-) False tsfm
XR_006251201.1 other downstream 410832 19115061 ~ 19149730 (-) False vdrb
TU68851 other downstream 504431 19055146 ~ 19056131 (-) True G46478
TU68756 other downstream 843074 18714174 ~ 18717488 (-) True G46423
unassigned_transcript_1266 other upstream 98392 19666434 ~ 19666506 (-) True trnaf-gaa
TU69304 other upstream 275002 19843044 ~ 19847398 (-) True tspo
XR_006251194.1 other upstream 528347 20096389 ~ 20102458 (-) False srsf3a
TU69405 other upstream 593398 20161440 ~ 20166279 (-) True G46840
TU69571 other upstream 961137 20529179 ~ 20531834 (-) True G46926

Expression Profile