RNA id: XR_006251209.1


Basic Information

Item Value
RNA id XR_006251209.1
length 2405
RNA type transcript
GC content 0.48
exon number 10
gene id tardbpb
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 22739972 ~ 22750947 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGTAATGCCATCTTGATACGAAAATAGTGTCGCATGAGTTGTATAAAACGGAATGTTGTCGTCTTAATATTGAGTACATATAAAGAGATAgcattgttttactttattctaAATAGAAACTGACACAGTTGAGAGTGTCATTCTTCGTGAGAGTTGTGCTAAGTGTCTCATTCATTCTTAGCAGTCACATTTTTCGGAACGAGGAGCGCTGCTGCTGGTGGCGCTAACAAAGGAATATCTGGCTCCGAGCAGTTGTTCATTGCTCGATTGAGGAGAGATGGCTGAGATGTACATTCGCGTCGCGGAGGAGGAGAACGAGGAGCCGATGGAGATCCCGTCGGAGGACGACGGCACGGTGCTGCTGTCTACGGTGGCCGCTCAGTTTCCAGGGGCTTGTGGCCTGCGTTACCGGAGCCCGGTGTCTCAGTGCATGAGGGGAGTTCGCCTTGTGGACGGAATCCTACACGCCCCCGAGAACGGTTGGGGAAACCTGGTCTATGTGGTCAATTACCCCAAAGaaACGGTTCTGCCGGATAATAAGAGAAAGATGGATGAGATCGATGCTTCATCCGCGACGAAGATCAAGAGAGGAGATCAGAAGACTTCAGATCTGATTGTGCTGGGTCTACCGTGGAAAACTACAGAACAAGACTTAAAAGATTACTTTAGTACGTTTGGGGAAGTCATCATGGTGCAGGTCAAGCGGGACGTGAAGACGGGAAATTCAAAAGGATTTGGGTTTGTGAGATTTGCAGAGTGGGAATCTCAGGGTAAGGTGATGTCACAGCGGCACATGATTGATGGCAGGTGGTGTGACTGCAAACTACCCAACTCAAAGCAAGGACCAGATGAACCAATGAGGAGCAGGAAAGTGTTTGTGGGCCGTTGCACGGAGGACATGACCGCGGATGAGCTCCGTCAGTTCTTCATGCAGTACGGGGAGGTCACAGATGTTTTCATTCCTAAACCCTTCAGAGCGTTTGCTTTTGTCACCTTCGCAGATGACCAGGTTGCTGCCTCCCTTTGCGGTGAGGATCTGATCATCAAGGGCGTCAGTGTGCACATCTCCAATGCTGAGCCAAAACACAACAACACTAGGCAGATGATGGAGCGGGCAGGGCGCTTTGGGAACGGGTTTGGAGGTCAGGGTTTTGGAGGCAACCGTAGTGCCATGGGGGGTAGCTCCAGCAGCTTGGGAAATTTCGGCAATTTCAACCTCAACCCAGCCATGATGGCTGCCGCCCAGGCGGCCCTGCAGAGCAGTTGGGGTATGATGGGAATGTTAGCGCAGCAGGGTCAGTCGGCAACATCTGGCACAAGCACAAGCGGCACAAGTTCCACTCGGGACCAGACCCAAACATACAGCTCGGGCAACAGCAACTACGGCAGCAGCTCGGCCGCTCTCGGCTGGGGCTCCGGCTCTAACTCTAGCGGTAGTGGGTTTAATTCCAGCTTTGGCTCTAGTATGGAGTCCAAGTCGTCAGGGTGGGGTATGTAAGCCGGTTTGTGTTTGAAGTGTCGGTATTTCTAGCGTGTTTGGTAAGTATTTTCCGAGAGACTTATTTCGTCACGTGTGTTTGGGAGTGGGGATGGGTGAAAAAGCAGTCtggggacaaaaaaaaagaatgttttgtaCACTGAATGGGATTTGAGTTAGTGTTTGGAGGGAGATGTTAACCAGGATGCTACGTTAATGTACCATCTTtggtggtgttgttttttttccccctaatgTTGTATTGTCTTGATCGATGCAAACAAAGCATTTCAACTGGATTCTTATAATGCATGTTGTACAATCTGTGGATATCTGAAAACGCATGAGAATTGCATCatattttaagtacatttatcattatgtaggacaaaaaaaccaaacaaacttGCATTGGAAAGAATCTGGTTGAAACCTGAACATATTATaagttcagctttatttcagtaCAGTTTTATGGAAACCCTTTAAAACAAGCCTTCATCAAAATCTCTTCTGCAGTTGACATCTGTGGGGTTTGCCTGGGAAGAGCGCCCTCTATGGCAGCACAGTGTGGCTGAGGTCATTATGTCACCTTCCTCCCATGTCTATATGCTCTCATCGCACGGCTCGATGACACGGGGCCTGGAATATGGCTGGCCGCAAGTGAACCCCAGGCGGGAAGTCCGTTTGGGGATGGAGGAAGATGGAGGATGCTGTGGTTCTGCATCTCTGAGCTACTAACCTGCTACGCTGACTAGCGTGAGACCTTTCTGGTGATGGTACAATGCTCCACCACTTCTTAGTTCATGCAGCTTTTCAGACCAGCAGGTGGCTTCCAAGAGATCAAAGGTTAAAATTGTAAGTCAGATCGTTCTTTTCATCTTCGTGGTGCTTTTCCTGACACCACAGTTTTATGTTCTGTCAAGG

Function

GO:

id name namespace
GO:0007626 locomotory behavior biological_process
GO:0048675 axon extension biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70268 lncRNA downstream 29344 22697899 ~ 22710628 (-) True G47412
TU70163 lncRNA downstream 328533 22342122 ~ 22411439 (-) True G47334
TU70118 lncRNA downstream 692237 22047110 ~ 22047735 (-) True G47306
TU70107 lncRNA downstream 734990 22004780 ~ 22004982 (-) True G47297
TU70090 lncRNA downstream 938940 21800278 ~ 21801032 (-) True G47283
TU70296 lncRNA upstream 132716 22883663 ~ 22884833 (-) True G47435
TU70394 lncRNA upstream 160524 22911471 ~ 22912033 (-) True G47508
TU70413 lncRNA upstream 263917 23014864 ~ 23015613 (-) True G47523
TU70437 lncRNA upstream 382355 23133302 ~ 23163157 (-) True G47535
TU70864 lncRNA upstream 1262494 24013441 ~ 24038303 (-) False rap1gapb
XM_043242731.1 mRNA downstream 14925 22712509 ~ 22725047 (-) True epha2a
XM_043242040.1 mRNA downstream 28978 22700799 ~ 22710994 (-) True rbm19
XM_043242691.1 mRNA downstream 444666 22233877 ~ 22295306 (-) True cntn3b
XM_043242832.1 mRNA downstream 591489 22073623 ~ 22148483 (-) False pdzrn3b
XM_043242831.1 mRNA downstream 591489 22073623 ~ 22148483 (-) True pdzrn3b
XM_043242246.1 mRNA upstream 877 22751824 ~ 22822451 (-) True ca16b
XM_043242242.1 mRNA upstream 135872 22886819 ~ 22904298 (-) True camk1a
XM_043241034.1 mRNA upstream 188505 22939452 ~ 22967456 (-) False kcnb1
XM_043241033.1 mRNA upstream 188505 22939452 ~ 22967456 (-) True kcnb1
XM_043241009.1 mRNA upstream 217198 22968145 ~ 22975843 (-) True ptgis
TU69571 other downstream 2208138 20529179 ~ 20531834 (-) True G46926
TU69405 other downstream 2573693 20161440 ~ 20166279 (-) True G46840
XR_006251194.1 other downstream 2637514 20096389 ~ 20102458 (-) False srsf3a
TU69304 other downstream 2892574 19843044 ~ 19847398 (-) True tspo
unassigned_transcript_1266 other downstream 3073466 19666434 ~ 19666506 (-) True trnaf-gaa
TU70438 other upstream 370836 23121783 ~ 23153123 (-) False G47535
TU70517 other upstream 648402 23399349 ~ 23400502 (-) True G47590
TU70553 other upstream 902271 23653218 ~ 23656456 (-) False LOC122347542
TU70562 other upstream 924325 23675272 ~ 23676792 (-) True G47627
TU70955 other upstream 1729187 24480134 ~ 24498681 (-) False ngfb

Expression Profile