RNA id: XM_043242524.1


Basic Information

Item Value
RNA id XM_043242524.1
length 3133
RNA type mRNA
GC content 0.49
exon number 12
gene id jade3
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 18099864 ~ 18109115 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTTTAGGACCCAGCGGTCGGGTAGTACAATAGAGCTGTTGTGTCGTGGTGAGAGGGTGATTTCTGCTTTTGGGATATTGACAGTgggacagaaaagaaaaaaacaacgaaAATACGAATATTTGTCGCATCTCTAGACGGCCGGCTCGCATACGGCCTCGCGGAGTCTGTCGCTGCGCGCGATCGTCCAGAAACGCTGGCTTTTTGGATGAGAGGCATGAGCgagaggcagaggaagcatAGTGGAGGAAAACAGTAGCATGCTTTTTGAATTTATGGATACGTCAGGATGAAACGCCTCAGGACTTCAAGCAGCAGTGACAGTTCAGACAATGAGAGTCCCTCGACATCCTTTTCCTCTAACAAGTATGGAAGCAAACCAGGCACCCCCGCCTCTGCTCAGAAGAAACCAGCAGAGGTGTTCAGAAAAGACTTGATCAGTGCCATGAAGCTTCCAGACTCTCACCATATTTCTCATGACGATTATTACCTGTTGGCGGACACTTGGAAGCAGGAATGGGAAAAGGGTGTACAAGTACTCGCTAGTCCAGACACTATCCCTCAGCCCTCTGTGAGGATAATAGCAGAGAAGCCAAAAGAGGTCCTCTTCAGTAAGCCAAGGAAATATATTCAATGCTGGAGCCAGGACTCTACAGAAACGGGTTACGTTAACATTAAGGAGCTAGCGGAGGCTATGTGTAGATACGACCTGGACGATATGGATCTGTACTGGCTTCAGCAGCTCAATGCAGAACTTGGGGTGATGGGTGACGGGCCGGTGGATGAGCTGACGATGGAGCGGGTGATGGAGGCACTGGAGAGACAGTGCCATGACAACATGAACCACGCCATCGAGACTGAGGAAGGGTTGGGAATAGAGTACGATGAGGACGTCATCTGTGATGTATGTCGCTCACCTGACAGCGAGGAGGGCAACGACATGGTCTTTTGCGACAAGTGTAACATTTGTGTGCACCAGGCCTGCTATGGCATTGTGAAAGTGCCAGATGGGAACTGGTTGTGCAGGACGTGTGTGCTTGGCATCAATCCCCAGTGCCTTCTGTGTCCTAAAAGAGGGGGTGCAATGAAGGCCACACGGGCAGGCACTAAATGGGCTCATGTAAGCTGTGCTCTCTGGATACCAGAGGTGAGCATTGCATGCCCAGAGAGGATGGAACCCATCACCAAAGTGTCTCATATTCCTCCCAGTCGCTGGTCGCTCATCTGCAGTCTCTGTAAACTCAAGACTGGAGCCTGTATACAGTGTTCGGTTAAGAACTGCACCATCCCTTTCCACGTCACTTGTGCTTTTGAACACAACCTGGAGATGAAGACCATCCTGGACGAAGGCGATGAGGTCAAATTCAAATCCTACTGTCTGAAGCATAGCAAACCCAAAGTAGGAGAAGTAGGCTTGAGTCCGGCCTGTCATAAACCTCCCACTGAGACTGAGAAAGTAGGCTTGAGGGCGCAGAAGCTtcaggagctggaggaggagttCTACACACTTGTTCATCCTGAGGAAGTGGCCCAAGACCTTGGACTGCCAATGAACCTGCTGGATTTTATCTTTCAGTACTggaagatgaagaggaaaagCAATTTTAACAAGGCCCTGCTGCCGCCTAAAGAAGATGAAGAGAACCTGCTCTTACAGCCACAGGAGGACAGTATCCACACACGAATGCGCATGTTTATGCATCTGAGGCAGGACCTGGAGAGGGTGAGGAACTTGTGTTATATGGTGAGTCGGAGAGAGAAACTCAAGCTGTCTCAGAGTAAAGCTCAGGAGCAGATCTTCAATCTACACGTCAAACTCATCAACCAAGAGTTATCTGCAGGGCTCCCAGTTTCCTCGTCTTTAGAGAACCTATTGTTTCACCCTCCTAGGATAACCCTAAAACTCAAAATGCCCAAAGTGTCGCTTGGCAATGGCAAAACCAACTCTAAATCTGGAAATGGCCCCCTGTGCCCGGATAACAGCGGTAACGTATATGACGCTGGTGAGGGAGGCATCGGTCAGGGCAAACCGCAACTCCATCTCGGACGAGTAAGGATAGAGGAGCGTGCCAATGGTCTCCTGCCAGCCTCCATCTACATTCGACGAGACGGCGGGACTCCCCCATTGGTCATGAAGCAATCTGGCAAACCCTTAGCTCTGCACGCTGCCCTCCACGGTCATTCGTCCAATAGGAAAGGCAAGACCGATCCAGAGAAAACACGCCAATTAAAACCCAACGGCATTATGGACAAACCCGTACTCCAAAGAGACACTTCCTGCCAGACGCCCACTGAAAAGGACACATGCAATGAGATTTCAGGGAAAAGTCAGTCAGGTGGATTCCACAAAACCTCTCTTGAGCATTTTAGTCGATCACTCAAGGAGGCCACTGTCAGTTTAGTACGGACTGAGGACCTTCGGGCTTTTGAGAAGAACGCACGCAAGTCATCCTCATTCTCCAAACCGCTTTCCAATGAGAGGCCCCTAGGGGGCAGCAAAACCTGCCAGGAGAGCGACGGTTACTGCCCGGATGCAGAGCTCAGTGACTCTGAGCCCGAGGCTAAAGGAAAGTGCCGACAGGGAGTGAGGGGGCAAAACCAGAGAGGACCCGCTGGAAACTACGTCAAGTCTACCAGCAGAGCAAAACTGTCTTTTGGTTCTCGGACATCAGTTCAAAGGTGACAATCTGCAAAGCATTAAAAGCATCTCCAACCCACTGCCACAGATTACTGTAGTCCTCTGGCGGTACTCGGAAGCGCCAGATTCTGTTTTCCTCTGTTGAGGATCTGCCGATGATTTTTAGTACAGTGTGCCAAAAAGTTCTCCCTGGCAAGTGATTGGTCTATTTTTGTGTTGGACTGATAAATATCACTGTGTCTCTCAAACCAGCCATAGTGTTTCTGCTGCACTCGGATTCAGTGCATGAGAGCACGTCTACAGTAGGTTTTATGGGCCTTGAAACAGTGTTTCTGTACATAAAAGGAACCTCACTTTTTAGACTGTACATAGTAGTTTGTGTTAAGATGTGGAGCACATTGAGAGGCTTTCCACGTACTGAAACTTTATCCTACTTTCTTACCGATATgcttatgcaaataaataaagacttaaGATCTCTGGTTTGACAAATCA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68243 lncRNA downstream 2374 18097068 ~ 18097490 (-) True G46074
XR_006251165.1 lncRNA downstream 32915 18062781 ~ 18066949 (-) True LOC122346732
XR_006251164.1 lncRNA downstream 55234 18040364 ~ 18044630 (-) False LOC122346731
XR_006251163.1 lncRNA downstream 55234 18042647 ~ 18044630 (-) True LOC122346731
TU68093 lncRNA downstream 277129 17822536 ~ 17822735 (-) True G46000
TU68269 lncRNA upstream 8241 18117356 ~ 18117582 (-) True G46092
TU68349 lncRNA upstream 140819 18249934 ~ 18250635 (-) True G46140
TU68375 lncRNA upstream 223728 18332843 ~ 18333266 (-) True G46160
TU68387 lncRNA upstream 250564 18359679 ~ 18359981 (-) True G46172
TU68733 lncRNA upstream 494876 18603991 ~ 18686824 (-) True G46412
XM_043241166.1 mRNA downstream 3329 18091115 ~ 18096535 (-) True plcxd1
XM_043241951.1 mRNA downstream 9333 18088060 ~ 18090531 (-) True si:dkey-66a8.7
XM_043241953.1 mRNA downstream 16191 18079634 ~ 18083673 (-) True nit2
XM_043241576.1 mRNA downstream 38979 18045653 ~ 18060885 (-) True LOC122346728
XM_043241577.1 mRNA downstream 59511 18028054 ~ 18040353 (-) True LOC122346729
XM_043242642.1 mRNA upstream 1531 18110646 ~ 18116377 (-) True rp2
XM_043243032.1 mRNA upstream 45434 18154549 ~ 18155965 (-) True chst7
XM_043241349.1 mRNA upstream 78313 18187428 ~ 18191523 (-) True LOC122346611
XM_043241348.1 mRNA upstream 89868 18198983 ~ 18205234 (-) False nipa2
XM_043241346.1 mRNA upstream 89868 18198983 ~ 18204345 (-) True nipa2
XR_006251188.1 other downstream 325757 17743715 ~ 17774107 (-) False opa1
XR_006251187.1 other downstream 325757 17743715 ~ 17774107 (-) True opa1
TU67962 other downstream 791386 17307815 ~ 17308478 (-) True G45910
TU67944 other downstream 912546 17186689 ~ 17187318 (-) True G45895
TU67937 other downstream 1269656 16816640 ~ 16830208 (-) True rgs8
TU68751 other upstream 535191 18644306 ~ 18645134 (-) True G46420
TU68756 other upstream 605059 18714174 ~ 18717488 (-) True G46423
TU68851 other upstream 946031 19055146 ~ 19056131 (-) True G46478
XR_006251201.1 other upstream 1005946 19115061 ~ 19149730 (-) False vdrb
TU68985 other upstream 1444204 19553319 ~ 19555931 (-) False tsfm

Expression Profile