RNA id: XM_043242548.1


Basic Information

Item Value
RNA id XM_043242548.1
length 855
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC122347353
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13469404 ~ 13471933 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCCACATCCGAATATCATTTATCTGGAAATGGCAATCGATACCAACACCTCTTGGAAAACAACACTTATAATCAGCGCCTCCCCTAAGTGTGATGAAGCCTCGCAGATTCTTCTAGCGCAGCACCACAGGATTCGCCGATCGGACAGTACAGCTTTCTTGCTGCTCACACCCGAGGAGTTTCCAGCTAAGCTTGAGAATGCAGAATTTTTGGAGAGAATTGAGAAATTTGTGCAGGTCCATAGGAACAGTTTTCTTCTGCTTCAAGCCCCAGTTTATGGAAAAAGGGAGTGGGAGATTTTATCGTCTGTGCAAAACAGatTTCTTGGCCGTAACCTCAGAGTCATACCTGTGCACAGCACTGCTGATGTAGTGAAGGGAATTCTGGTCATCGCCAAAGCCACAAGTAAACCCAGTGTGGTGAATTTGAGAGATCAGATGTCTTTGGCTTGTACTCACATCATTGATCGTAGCCCAGTTTGGGGAATGCTTCGAGGGATGGAGTTCTAGAGATGTTCCTCTCCATTCATGTCCTTATTGATGACTATGCTTGTTTTGAACAGCAGATGTCAGTATTGTTTCATAGTAAGTGTTGTGTCAAAACGGTTTCTTGCCGTTCATCATTTGTTGTTTagccttaaaaaaacatttactattaaGAAAAAAGTAACATAGTCAGAGGAAAACTCTTAAACCTTTTATTCGTGCTGGAAAAATCTTCAAGGACAGAACACAGAATAGTATTGAAAATATTGATATCGTAACTCTTACATTGTTCCATTGTTCCTTATCATTTCAAATGTGTCATGCTACAGAGgaggaaaataaattaatagactATTAAGTTCAGAAAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66481 lncRNA upstream 51564 13417558 ~ 13417840 (+) True G44899
TU66480 lncRNA upstream 52432 13416759 ~ 13416972 (+) True G44898
TU66472 lncRNA upstream 69856 13399022 ~ 13399548 (+) True G44890
TU66463 lncRNA upstream 111416 13357403 ~ 13357988 (+) True G44886
TU66462 lncRNA upstream 112780 13356269 ~ 13356624 (+) True G44885
XR_006251135.1 lncRNA downstream 117952 13589885 ~ 13594537 (+) True LOC122346508
TU66580 lncRNA downstream 118053 13589986 ~ 13594601 (+) False LOC122346508
TU66598 lncRNA downstream 178182 13650115 ~ 13650883 (+) True G44997
XR_006251162.1 lncRNA downstream 184259 13656192 ~ 13657766 (+) True LOC122346715
TU66600 lncRNA downstream 189879 13661812 ~ 13662097 (+) True G44998
XM_043241151.1 mRNA upstream 78753 13367496 ~ 13390651 (+) False tp63
XM_043241156.1 mRNA upstream 78753 13367496 ~ 13390651 (+) False tp63
XM_043241152.1 mRNA upstream 78753 13367496 ~ 13390651 (+) False tp63
XM_043241157.1 mRNA upstream 78753 13367496 ~ 13390651 (+) False tp63
XM_043241159.1 mRNA upstream 83420 13367495 ~ 13385984 (+) False tp63
XM_043242778.1 mRNA downstream 64578 13536511 ~ 13542567 (+) True rpl5b
XM_043241553.1 mRNA downstream 126606 13598539 ~ 13607514 (+) True atp1b1a
XM_043241549.1 mRNA downstream 167061 13638994 ~ 13644273 (+) True zgc:172121
XM_043241551.1 mRNA downstream 167066 13638999 ~ 13644273 (+) False zgc:172121
XM_043241547.1 mRNA downstream 167073 13639006 ~ 13644273 (+) False zgc:172121
TU66465 other upstream 59492 13394229 ~ 13409912 (+) True G44887
TU66125 other upstream 360038 13108735 ~ 13109366 (+) True G44645
TU66063 other upstream 387285 13080610 ~ 13082119 (+) False smx5
TU66085 other upstream 688484 12766183 ~ 12780920 (+) False crocc2
TU65993 other upstream 1376949 12087399 ~ 12092455 (+) False G44588
XR_006251224.1 other downstream 500240 13972173 ~ 13979005 (+) False meltf
unassigned_transcript_1264 other downstream 609000 14080933 ~ 14081004 (+) True trnag-ucc_2
TU67192 other downstream 1764278 15236211 ~ 15238200 (+) False pomgnt1
TU67233 other downstream 1886928 15358861 ~ 15459386 (+) True G45419
TU67277 other downstream 2093048 15564981 ~ 15566668 (+) True G45448

Expression Profile