RNA id: TCONS_00010228


Basic Information

Item Value
RNA id TCONS_00010228
length 653
RNA type mRNA
GC content 0.46
exon number 5
gene id XLOC_005331
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 20788243 ~ 20796658 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTACAGAAAGCGCGTGGGGGGAGGAATCAACTTCAGACTCTTGGACTGCCATCAAACAATTCCAATGTCTGGGAATGAAGAGCGCACTTTCATCGCCATCAAGCCGGATGGGGTGCAGAGAGGACTCGTCGGAGAAATCATCAAGCGCTTCGAACAGAAAGGCTTCAAGTTAGTGGCTATGAAGTTAATCCagGCAGATGAGGATCTTCTTAGACAGCACTACAGTGACCTGAAGGATCGGCCTTTTTTCCCTGGACTTGTCAGTTATATGTCTGCTGGTCCTGTGGTTGCAATGgTGTGGGAAGGTTTTAATGTTATAAAAACTGGCAGAGTAATGCTTGGCGAGACTAATCCCATTGACTCCAAGCCTGGGACTATCCGAGGTGACTTTTGCGTTCAAGTTGGACGGAACATTATTCACGGCAGTGATTCTGTGGAAAGTGCCAACACTGAGATCAACCTGTGGTTCAAACCAGATGAGATCTGCGATTACACCAAATGTCAGGAAAGCTGGATCAACAGCTAAATGCTTCCTTCTTTTCCTGCACATTTCTCCCTTTCTAGTGTTTCTCCATTAATGTACACTTCCCCCCCCACCACTGTTTCTGGTGTCTgtctttacaataaaaccaaaaatcaTTTCTACCCCATAA

Function

GO:

id name namespace
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0006183 GTP biosynthetic process biological_process
GO:0006228 UTP biosynthetic process biological_process
GO:0006241 CTP biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004550 nucleoside diphosphate kinase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7656 Predicted to enable nucleoside diphosphate kinase activity. Predicted to act upstream of or within nucleotide metabolic process. Is expressed in several structures, including digestive system; female organism; gonad; male organism; and visual system. Human ortholog(s) of this gene implicated in neuroblastoma; ovary epithelial cancer; and teratoma. Orthologous to human NME1 (NME/NM23 nucleoside diphosphate kinase 1) and NME2 (NME/NM23 nucleoside diphosphate kinase 2).

Ensembl:

ensembl_id ENSDART00000064339

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010222 lncRNA downstream 203804 20580566 ~ 20584439 (-) False XLOC_005327
TCONS_00010223 lncRNA downstream 206255 20580889 ~ 20581988 (-) True XLOC_005327
TCONS_00010219 lncRNA downstream 378497 20406586 ~ 20409746 (-) True XLOC_005326
TCONS_00011121 lncRNA downstream 453534 20314995 ~ 20334709 (-) True XLOC_005321
TCONS_00011120 lncRNA downstream 722416 20056971 ~ 20065827 (-) False XLOC_005318
TCONS_00011123 lncRNA upstream 1367600 22164030 ~ 22220870 (-) False XLOC_005335
TCONS_00011122 lncRNA upstream 1367600 22164030 ~ 22220870 (-) False XLOC_005335
TCONS_00010240 lncRNA upstream 1367600 22164030 ~ 22220870 (-) True XLOC_005335
TCONS_00011124 lncRNA upstream 1474070 22270500 ~ 22280703 (-) True XLOC_005337
TCONS_00011125 lncRNA upstream 1647210 22443640 ~ 22445101 (-) True XLOC_005340
TCONS_00010226 mRNA downstream 122378 20662426 ~ 20665865 (-) False XLOC_005330
TCONS_00010227 mRNA downstream 123079 20662636 ~ 20665164 (-) True XLOC_005330
TCONS_00010225 mRNA downstream 129958 20652957 ~ 20658285 (-) True XLOC_005329
TCONS_00010224 mRNA downstream 172083 20605191 ~ 20616160 (-) True XLOC_005328
TCONS_00010221 mRNA downstream 203830 20577113 ~ 20584413 (-) False XLOC_005327
TCONS_00010233 mRNA upstream 872955 21669385 ~ 21681509 (-) False XLOC_005333
TCONS_00010234 mRNA upstream 875645 21672075 ~ 21684255 (-) False XLOC_005333
TCONS_00010236 mRNA upstream 877762 21674192 ~ 21684197 (-) False XLOC_005333
TCONS_00010237 mRNA upstream 884355 21680785 ~ 21684223 (-) True XLOC_005333
TCONS_00010238 mRNA upstream 1002700 21799130 ~ 22039350 (-) False XLOC_005334
TCONS_00010220 other downstream 203804 20575640 ~ 20584439 (-) False XLOC_005327
TCONS_00010211 other downstream 598957 20189169 ~ 20189286 (-) True XLOC_005319
TCONS_00010183 other downstream 2049714 18738413 ~ 18738529 (-) True XLOC_005303
TCONS_00010161 other downstream 3081342 17706792 ~ 17706901 (-) True XLOC_005289
TCONS_00010135 other downstream 3789801 16997206 ~ 16998442 (-) True XLOC_005275
TCONS_00010232 other upstream 773353 21569783 ~ 21569899 (-) True XLOC_005332
TCONS_00010235 other upstream 876519 21672949 ~ 21680620 (-) False XLOC_005333
TCONS_00010242 other upstream 1434716 22231146 ~ 22238004 (-) True XLOC_005336
TCONS_00010246 other upstream 1554202 22350632 ~ 22355405 (-) True XLOC_005338
TCONS_00010257 other upstream 2230446 23026876 ~ 23068605 (-) False XLOC_005347

Expression Profile

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