RNA id: XM_043242580.1


Basic Information

Item Value
RNA id XM_043242580.1
length 3976
RNA type mRNA
GC content 0.44
exon number 9
gene id rhbdl3
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 10167236 ~ 10202756 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCCTGTTCACCTCCTGTCACTCCAGATCAGTGAAAGAAGGCGGGCGCCTCTCGCTTACCTCCCCGCGCTGTGAGGCGCTTCGCTCGGTCACGCTGAACTTTGGCAAAGCGCTCTGTGGATGCTGGCGGGAGTCGTTCCTCTCGGGCGCTGCTGGCACGCGCTGTGGATGCGAAACAACGGCGAGGTACAATGACGCACCACAAATGAACACTTACGCATTTCACTGCTTTATTTATAGTCTTGCGCGCTTTTACGTTGGTGCGATAAACACGACAAGCCGCTGTTGTAAATAACCTGATCATTTCGCTTTATCGCGTTTATTCCGTTTGGTGACATAGGCTACCTGGCATTCAGTTTGAGCAAAATCAGGCACGACACTGGATGGTCATGGTTTAGCCTGACGCGAAACGCAAAATAGCGTAAAGGGATTTGAGAAGGAAACGATGTTTCTCTTGCAGGTGACTGTTTGAGGATGAAGCCAGACGCTGCTGGGAAAGACAGGCGTGATTAAAAATCTAACTTATGTGTGACGTGCCGTGGATTTACAGTGACTAAAAGATCCTGGGATGAAATATGGAAGCGAGGAGGAACTCCGCATACCCCCTTAGTTTGGGATAAACTCACATGCCGTAGGATATCAGTATGACAGAGCTGGAGAAACGCCAGTTTAGCTCTGCATGAAGTTTGGAGTTGTCAAAACCGTGTATGTGGATGTATGTGGCGAAATATATCTGAACAAGACATCATGGCAGAACTTTATGAGAAGAGATAATCGTTATTCGGGTGGACTGAGAGGGGCACAGGGGCGATGGTGAACTCATCCCCAGCGGTCGCTGCTCACGCAGAGGGTGAGGAGATCGAGGTGCTAGAGAGCACTGATGTCCTTCCCGTAGCTCCAGAGGACCAATGGAAGTCTCTTTTTGACAAGTATGACCCAGAGAATTCAGGCTTTATCAGTACTGAGCGTTTCCGAGACCTGCTTGAGGCTCATGGATCAGAACTGGACCCCCACAAGCTGGAAGTTCTCCTCGCCCTGGCTGACGGAAACGCTGATGGAAAGATCTGCTACCAGGATTTTGTTAACCTGatgagcAATAAGCGCTCAAACAGTTTCCGCCGAGCAATCCTGCAGGGCAGTCGGCAGCTCAGGAATTCCGCGCTGAGAGAAGAAGTGGGCTTGGGTCTGTCTCGGAGACTCGTGCGTCACGTTGCCTATGAGACTTTGCCAAGAGAGGTGGACCGCAAGTGGTACTTTGACAGTTACACCTACTGTCCACCACCATGGCTTATGCTGGCCATCACTATAACGGAGGTTGTTGTCTTTATGTATTATGGATTCCAACTCAACCGCTGGGTTCTGCAAGTCTCATCACCGTACTTCCTGAAGGGCCCATTACCATACCACCCACAGCTCAGAGCTCAGGCCTGGCGCTACCTTAGTTACATCTTCATGCACGCAGGAATTGAGCACCTGGGTCTAAACATGGCCATGCAACTTTTGGTGGGTGTGCCGTTAGAGATGGTCCACGGAGCTTTGAGAATCGGcctggtgtatgtgtgtggcgTCCTGGCAGGTTCATTGGCTGTGTCAGTGACGGACATGACAGCACCTGTGGTCGGTTCATCGGGCGGAGTCTACGCCCTCGTCTCCGCCCACCTCGCCAATGTTGTCATGAACTGGTCAGGGATGAAGTGTCAGTTCAAGCTCTTTCGCATGGCAATGGCTCTGGTGTGCATGAGTGTGGAGTTCGGTCGTGCCGTCTGGCTTCGATTCTATCCCCCAGCCTTCCCACCATGCCCTAATCCCAGCTTTGTGGCTCATCTGGGGGGTGTGGCAGTGGGCCTCACCCTCGGCGTTGTGGTTCTTCAGAACTATGAACAGCGTTTGCAGGAACAGTCCTTGTTCTGGATCTTCTTCAGTGTCTACACACTCTTTATCCTCTGTGGAATCTTCTGGAACATTTTTGCTTACGGTCTCTTGGATGTCAAGTTACCCCCACATCCATGAAGCCCAAgagtgtgtgttcgtgtgtgggCGACATAATTTAACAGTTGTAAAGGTCgtaaatgagaaacaaatgcTAAGTACCTTATTGAGTCCTCTTGCAGTTTTGCAGTTTGTGTTAGTGCCTAAACCATGCCAAGTCGTCAAAAGCAGCTAAAACAGCAGATTCCAATTTTTAAGCAACGGTGAATGTAAATTTGCAGGAGAGGGTCAAAGGTTGTTGCTTTTTACAGCTACATGCTTTGTGCCAGCCCTCGAGGGTTGTCAGCAATAGCACAagtattcatttcaaaataaaacttggGTTTAGTAGCCCCTGCTGGCTTGTCAGCTTTTCGAGGTGCCAggtaaaattattttcagttgttgaaGGAATGAATATATTTCCTGAAAGCACAGAGCCTGAGGTTGCATGAGCAAAAAGAGAAATACCAGTATTTTATGAGAACATTTTAGTAAGtgttctatatttttataaacaactAAAGATAATGAGGTAGCATGATAGCACTGTTATGGCTCATTATGTGTGAAGGAccttttaaagatatttaagaGTAGCGAGGAAACAGCTAGTTTAACTTCTATCTTGCAAACAGATAgtgttattttctgtaattaatgTTTCAATGTTAAAAGGTCAGTTTAAAGTAACTGCAATCCCTTAGCATTGTCAGTGGCGGTCTGcaacagatttcttttttaatgtatatcagtattatagttaataaagCATTctattatattgtattactgATAATTATGTTCCCATACAACAGAAGATTTCTcctttacatataaaaatattagtaattaaCCAGGTAATTAAGGTTTCTGACTGGAGTTTGGACTTTTTTAGGTATTTGTTTGTAACCTGTGGCTTTAAAAAGCCTTCACaacatactaaaataatattgaaagCTAATTAACTTTAATGGTTACCCCATTAATGCCAAAGGAAgtaaaaagaagtttttttcccctttttcaTCAGCAACattatttgaatattcattCTATCAATACTAATCAGAATTCACACCGAGACACTGGTATTTGTTTAGTCATTGAAGCTCCACTGAAAGACCAACactgtttttttgctgttgttcttGTTGTTCTTATTGCTATcaagaaatgtgttttgcagTACCACAGATTGCACACTTGATAAGATGTATTGaatcatatttgtttgtatatttgaaTCATGTGTTAGTGGAATGGACAGTACAACCAGGGAGTCATCAGAACATCAGAACTCAAGTTCAAATCATTGATCAACTGaatgataacaaaaaaagtaatttaccACTATACATGCTACAAATGAATTGATCTGTtctgttatttaatatatgatatgTATTGCAGTACTTTTTGGACGAATTGTGATTGTGTGTCATCTACTGTACCTCAAATACTGTAAGTGGTCTATGTTATGAAGTTTATTTCTATTGGTGCTGTAGTTTTGGACAGGTTGCTGAATGTCCGTGCCACTAGTAACTGGTTATCTCCTCTCAGTTCTGTGCACAGTCATTATTTACAGCAAAACTGATCCTGGTACAGCTTTGTATCTTCTGCCtgcagagagggagagagagagtgtgtgtgtgtgtgtgtgtgtgtgttgccacTGATTCTCTAACAGGAAAAGAGGAACTGAATAAAACCCTCAAGTTCTGAAAATGATTGAATCCAGTACTTCAGTCCCAGTTCATACCAGTACTCTGTGAACAACTGGATCTGCTTTAACAGTGTTTAAGCTACTTTTGAAGTGCCAgtatactttttgttttgcattgtgcTGACTTGTGTAATGTAATGCTGAGATGTAAGTAACCTGGGATTGTGTAAAGGGCTATGGCGCCAGAAATAATGAGTTAACCAAGCATATTTTaacatgcacatattttgtaGATTTGATATGTAAATAGGGAGTGCATTAAAATCTGTGATTGGAAATggca

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K02857 RHBDL1_2_3; rhomboid-related protein 1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65386 lncRNA downstream 22089 10138905 ~ 10145147 (-) True cd7al
TU65311 lncRNA downstream 69057 10097980 ~ 10098179 (-) True G44105
TU65294 lncRNA downstream 82961 10083990 ~ 10084275 (-) True G44095
TU65251 lncRNA downstream 149168 10013936 ~ 10018068 (-) True G44065
TU65223 lncRNA downstream 218251 9945667 ~ 9948985 (-) False anapc11
TU65412 lncRNA upstream 35665 10238419 ~ 10238618 (-) True G44167
TU65413 lncRNA upstream 39456 10242210 ~ 10242509 (-) True G44168
TU65408 lncRNA upstream 39950 10242704 ~ 10243401 (-) False tnrc6c2
TU65477 lncRNA upstream 153260 10356014 ~ 10356314 (-) False LOC122347367
TU65479 lncRNA upstream 169886 10372640 ~ 10372852 (-) True G44208
XM_043240987.1 mRNA downstream 15172 10146224 ~ 10152064 (-) False znf207b
XM_043240986.1 mRNA downstream 15172 10146224 ~ 10152064 (-) True znf207b
XM_043240988.1 mRNA downstream 15173 10146224 ~ 10152063 (-) False znf207b
XM_043240992.1 mRNA downstream 22068 10141747 ~ 10145168 (-) False cd7al
XM_043240990.1 mRNA downstream 40495 10123815 ~ 10126741 (-) True tefm
XM_043241385.1 mRNA upstream 1863 10204617 ~ 10243425 (-) False tnrc6c2
XM_043241384.1 mRNA upstream 1863 10204617 ~ 10243425 (-) False tnrc6c2
XM_043241383.1 mRNA upstream 1863 10204617 ~ 10243425 (-) True tnrc6c2
XM_043241894.1 mRNA upstream 93250 10296004 ~ 10335041 (-) True sept9b
XM_043241896.1 mRNA upstream 93250 10296004 ~ 10315469 (-) False sept9b
TU65385 other downstream 22089 10141611 ~ 10145147 (-) False cd7al
TU65247 other downstream 139601 10025578 ~ 10027635 (-) False c6h17orf67
TU65030 other downstream 894931 9271418 ~ 9272305 (-) True G43900
TU65029 other downstream 896314 9269188 ~ 9270922 (-) True G43899
TU65026 other downstream 899912 9266002 ~ 9267324 (-) True G43896
TU65678 other upstream 507291 10710045 ~ 10716741 (-) True G44358
XR_006251151.1 other upstream 852281 11055035 ~ 11069458 (-) False brdt
XR_006251152.1 other upstream 852281 11055035 ~ 11069457 (-) False brdt
unassigned_transcript_1087 other upstream 1769726 11972480 ~ 11972551 (-) True trnag-ucc_1
unassigned_transcript_1088 other upstream 1769955 11972709 ~ 11972780 (-) True trnap-ugg_4

Expression Profile