RNA id: XM_043242587.1


Basic Information

Item Value
RNA id XM_043242587.1
length 2488
RNA type mRNA
GC content 0.52
exon number 17
gene id larp4ab
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19448028 ~ 19461259 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGAAAGACAAGCGCACGGCCAATCAGACTCCCGAAGCGCCGTGTAGATGCTTACGCACAGCAAAGGGGATTGATGCGGATGATGAGTGGCCGCGAAACTCTTTGGCAGTGAACTTGCACTTTTGCTCGAAACGGAAAGAAGTGGAATCCGGTTCCGCGTTTTTCTGAGCTAGGTTAATTCGCCTACTGGATATTTAGCGAGTGATAACGTTGTCGGGGGAGAAGACCATGTTGTTGTTTGTGGAGGTGACCACCAAGGGGGCCGGTCTGAATCCCAATGCTAAAGTGTGGCAGGAAGTGTCTGCTCCAACCACCCAGACTCCAGAGGCAGCCACAGAGACATGCCATTGGCCACAAGCAGATACAGTCTCCAATGAGGAGTCagaagGTTTCAAGGAGTATGATGTTGGGTATGACTCTGAGTCAGCCCCTCCTATGGAGAACAGCATGTTGAATGGCATGGAGTCTGCAGAACTGGTGTACCCTCTCTATGAACCAGTGGATGGTGAGACAGTTGAGGAACAGCCTCCGTTGACTGAAGAGAGTCTGAAGGAGTCACTGAAAAAACAGCTGGAATTTTGCTTCTCAAGAGAGAATCTCTCCAAGGACCTTTACCTGATGTCCCAGATGGATAGTGATCAGTTTGTGCCTATTTGGACTATTGCAAGCATGGAGGGGGTCAAACTGCTGACTACTGATATGGACCTGATACTCGAGGTGCTACGAGCCTCTCCCATGGTTCAGGTGGATGAGAAGGGAGAGAAGGTACGGCCAAACCATAAGCGTTGCATCATCATTCTCAGAGAGGTTCCTGAGACCACACCTGTAGAGGAGGTGGAGGCCCTgtttaaaagtgaaaagtgtCCGCAGGTTATCAGTGTGGAGTTTGCGCACAATAACAACTGGTACATCACATTCCAGTCAGACACTGATGCTCAGCAGGCCTATAGATACCTCCGTGAGGAAGTCAAAACCTTTCAGGGCAAACCAATTATGGCTCGTATAAAAGCCATAAACACTTTCTTTGCTAAGAACGGCTATGGGGCTGTTGACTCTGGGGTTTACTCCACTCCATCACAGTACTCCTCTCCAGTGTACCTGCAGCAGGTGTATCAGCCTCCACAGCAGTACCCTCTCTATAGCCTCCTGCCTCAGACATGGACTCCTTCACCAACCCCTTACTTTGAAACGCCACTGGCTCCATTTCCCAACAGCACATTTGTTAATGGCTTTGGCACAGCAGGAAACTACAAAACTGGATCCTCTCCAATAAGCCTTACACGTAACTACCCCCGCAACCGACTTCCACTTTATTCGAGAAAGAATGTAATCAATGCCTTCAGGAATCATGTGAAGCCACAACCTCGTGCTGAAGTGGGTCAGCTGACAGAGACTTTATCTGGTACCGGTAGTCCTCAGCCTCCATGCACCCCTACATCAGATTCCACTGCGTCCACCCTTACTCCGCTTTCTGACTCGCCTGCTTCCCCCAGAGAGAACCTCCACTCAGATCTCAGCAGCcgggccagGAGAGGAAGCTATCGTGGCatgaggaggagaagagaagaTGAAAGAACAAGGCCGAACCCTGAATCAGAAGTGAAAGCTCCACCTCCTAAGTTTGACCTCGCAACCACTAACTTCCCACCATTGCCAGGAGGTGTCCCGAGTCGTGTGCCAGGTGTGACTGTGCAAACAGAATCAGTGTTGGAAAATCGGATGGCTGATGTAGTTAAGGGCATCAGCAGGGACAAGccGGAAACATCTAAACAAGATGTCAGTCAAGATCCTGAACCGTGTCCAGTGGAAGCTCAGTCGAACGGACCCTCTACTCCAGCGCCAAAGCTTTCTGCCACAAAACAGGACTCACCTACCACTAGTGCGTTACATCAAGTGAAGAGACCTGAGAAAGAGGTCCAGGTCTCTGACACACCACCAGACCTTGCATCGGTGACGACAAAGCACATCCAGCCCAGTTCTGCCCCTAAACCTTCATGCTGCCAGTCAAGCACTTCAAGCACTGCATCTACACCACCTGCCCCAACAAGCGCAACTGTCCAGGAGCCTCGGAAGCTAAGCTATGCAGAGGTGTGTCAGAGGCCACCCAAAGACCCACCCCCTGCACCGACCGCCCCACCCAGCCCCAGTCCCACCCCTTCTCCCACCACAAACCAGCCACTACGTGAACCTCGCGTCAACAAAGCGGAAGGCCCAGCCTCATCCCGCTGCAGTCCTGGTGACAAACTGGAGAAAGGAAATGAGAGTCGGATGTCCAGAGAGCAGACTGGCTACCAACATGGTAACGGCCCCAGAGGGTCAGGTTTTAAGCTCAGAGAGCAGCAGAGACGGCCCCTACAGGGTCGGCGCTCCTCTCCACAGATGGGGTACAACAGACGCAGtggaaaagaacaaaacatCCCACCAAGTTCGCCAAAGTAATGCCTCATATGCCCACAACACATGTGCACACGTGTGTCTATGTGTGAta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68953 lncRNA downstream 50298 19393477 ~ 19397730 (-) True G46540
TU68955 lncRNA downstream 50298 19393477 ~ 19397730 (-) False G46540
TU68954 lncRNA downstream 50623 19393477 ~ 19397405 (-) False G46540
TU68898 lncRNA downstream 205217 19212639 ~ 19242811 (-) True G46509
XR_006251202.1 lncRNA downstream 296334 19149746 ~ 19151694 (-) True LOC122347223
XR_006251216.1 lncRNA upstream 148143 19606362 ~ 19607056 (-) True LOC122347383
TU69118 lncRNA upstream 333423 19791642 ~ 19792328 (-) True G46658
TU69107 lncRNA upstream 343024 19801243 ~ 19802266 (-) True G46647
TU69142 lncRNA upstream 375851 19834070 ~ 19838047 (-) True G46673
TU69300 lncRNA upstream 383260 19841479 ~ 19842967 (-) False tomm6
XM_043242596.1 mRNA downstream 3417 19435181 ~ 19444611 (-) True atf7b
XM_043242598.1 mRNA downstream 3419 19435181 ~ 19444609 (-) False atf7b
XM_043242597.1 mRNA downstream 4417 19435181 ~ 19443611 (-) False atf7b
XM_043241079.1 mRNA downstream 13815 19414227 ~ 19434213 (-) False dip2bb
XM_043241077.1 mRNA downstream 13830 19404467 ~ 19434198 (-) False dip2bb
XM_043240974.1 mRNA upstream 4172 19462391 ~ 19464546 (-) True pfdn5
XM_043242838.1 mRNA upstream 7095 19465314 ~ 19477556 (-) False espl1
XM_043242837.1 mRNA upstream 7095 19465314 ~ 19477556 (-) True espl1
XM_043242214.1 mRNA upstream 19499 19477718 ~ 19486847 (-) True itgb7
XM_043242213.1 mRNA upstream 28773 19486992 ~ 19501085 (-) True pfkmb
XR_006251201.1 other downstream 298298 19115061 ~ 19149730 (-) False vdrb
TU68851 other downstream 391897 19055146 ~ 19056131 (-) True G46478
TU68756 other downstream 730540 18714174 ~ 18717488 (-) True G46423
TU68751 other downstream 802894 18644306 ~ 18645134 (-) True G46420
XR_006251187.1 other downstream 1673921 17743715 ~ 17774107 (-) True opa1
TU68985 other upstream 95100 19553319 ~ 19555931 (-) False tsfm
TU68987 other upstream 95100 19553319 ~ 19555931 (-) False tsfm
unassigned_transcript_1266 other upstream 208215 19666434 ~ 19666506 (-) True trnaf-gaa
TU69304 other upstream 384825 19843044 ~ 19847398 (-) True tspo
XR_006251194.1 other upstream 638170 20096389 ~ 20102458 (-) False srsf3a

Expression Profile