RNA id: XM_043242588.1


Basic Information

Item Value
RNA id XM_043242588.1
length 2801
RNA type mRNA
GC content 0.42
exon number 18
gene id nol11
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 9283403 ~ 9299043 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAAGAAATCAGAGAAACATGGCAGCGTTGTATGAAGGATACACGTTGTGTAGAGTTGGAACAGTGCAAAATTCTAATACAGGGATTCTGGGAGTTGAACAGGGTAGAGATATTGACCATGTTATCGTCACTGACTCTTCGAGATTCATTACCGTTTATAAGGTGTCTGATCAGAGGCCTACGGGCAGTTGGTCAGTGAAACAGGGACAGATAATCTCTTGCCCCGCAGTGTTTAATACGCAGTCCCAGGAATATGTGGTCGTTACAGATGACAAGGTCGTCAGAGTTTGGAAAGAAGATGATGTCAACTTGGAAAAGGCTTTTAAAGCGACAGTTTCGGCTGAAGTTCTCAGAGTGCTGTCAACTCCTGACTCTGAGCTAGTGGTGCTGTTTTGTTGTggggctgtccggtccctggACTTACTTCTTGCTTCTCCACAACAGCCTATAGAGCATGTTTTGGCAGAGGATGAGATTATCAGGTGGAGCACCATCATTAAGGCAGAGCACCTGCTTGTTTTGTTCAGCACAGAACAGaGAGGAGAGCACTACCTATATGTTCAGAGATTTAACCCCAACACTCTTGTGAAACACAGATTTGAGACCGAACCTGGTCTCCCTGCACCTATTAGCTTCTCTGCCACATGCAGGGGTAGTAACATACACTTGTTGTATTTGTATTTGAATGGCAGTGTCTATGAGAGTGTCTTGCCACTCAGAAGTTTATCCACAGGAGCTGAAGGTGTCCTGGCTCTATCTCGCTCCCTATGTCTTTGTCTTCCTCTTGGGGAAGAAAAACTGATGTCTGGTGCTGTTGTTGTGCTTGATGATGCACATGTAGCTGTGGTTGGATTCCCCCACCCATCTGCTGGAGCTTGTAAAGATTACCTTTGCATCTGGAACACACGTTTTCAAACTCTCCAGGCTTGTAAAGAAATGGCAGGAAAGACCTATAGTCAGTTGTGGTGTTATTCTGGGAAGCTGTACATCCCTCATGGGAAAATGCTGTCAATAATTCCTTTTGAGTGCCAGAAGTCATCTCTTGCAGCTGCCCTGGGGAAACTGAAGCAGACAAGTCACAGTGCAGAATTCAAATCATGCAGTTTTGTGTCTTCCTGGACCGCCCAGACTTATCGTGACGTCACACAGATAACAGAAATCAAAAGCAGAATGTCAACCAGaaatCATGCAGATGTCAAGTCTGCACTGACAGTGGATCAGCTCCTAGAACATATTAAGACTAGTGCAGTGCAAGAGGATATACAAGTAGAGGTGGGTGAGTTTATTCGTCGGACTCCCCAGGCTGACCTCCAGCTGGCAGTAGGCAGGGTGGCATTAGAGCTAGTGTCAAGATCTCAGACAGATGCCAACTTCTACCCTCAGCGTGTATTTCTACAGCTGCTAGAGACACGGTTCCTCTGCTACAGTGTGTGCCCTGAACTGCTTTCACTGGCCATGGAGAAGAAAGATTTCCGTCTCTGTCAGATTgctttacaaatattttctgaCATTCCTGAAGCAGTCATCTGCGCTTATGTCAAAACTATTCTCAGTACTTCAGACTCTGAAATAGAGACTGTGAATCTTGACACAGACAGTGTCATGTTCATGAAAGAGCTGACTCAGACACAAAGTCGATCAGATGAGGAGGAGGGGCAGCTGAATGGCTTCGGCTCTAGTGGACTGGAGAGTGGTGTTTCCCATATCCCCAGCAAAAAGCTGCAAAGAGATACCTTATCACTGGATATGAGTTGTCCTGTGGGCTTACACAAGGGTGCCCTTCTAAATGAGGTTCTGCAGACAGCATACAGTGACAGACCACTGCTGCCACATCTAAAAGATCTCGCGGTTCCACAGGTCATAaTCTTTTTACAGTATCTAAGAttcctttattttaaatattgttatgaTGCCCACGAACAAATCAGAGCGTTACGGACCCCAAGTATTTCTCAGatcataGATTGGGTTTGCTTACTACTAGATGCTCATTTCACTGTCTTGGCTGTGGCACCAGAGGCCAAAGGGTTGGTCTCTGATCTTCACAAATTTGTGAGGTCACAGGTAAAACTATATGCTGAACTGGGGAAAATTGAGGGAAGTCTTCAAGTTATTAAAAATTCCAAACGGTCTGAAGATTTTGGCATGTACGCCATACAAGTAATTGAGCTCTTTTAGATTACTTCcagattgtttttataaaatgctgctgttgctgttttCTGTCTGGTTTGActtggtttaaaatgtattctctcttaaaacaaaccaagaaaatgtttctgcttttttaaatcatccctcaaccacacacacaaaattttaaattgctttGCAGAATATcatgcaaaatgtgttttaatgtctgtATGAATGAGCTGATATTCATGCGAAGGAAGCTATTGAACTGGAAGTAGATGTCAAATTGCTCCTGCACACCATAGAATATTGTCTTCACCAGATTTAATCAAGCAGTGTTCACATGTTGAATCCACCTTTTTCATAACAAGCCCGTGTTAAATAATGAGACACACTTAAAGTTTCAGAGTTCCATTCAAGAAGATTGcaacaaataatttcaaattgtaAGATTGTGCTACAAATCTTTATACATCATTTTGACAGAAGAGGCtgtaaattcattcattttcaaaagtcaGGGGAATaacatttagtttaataatGTGACACGACTTAACTATATATAGTATCTCTTTTTAGCCGATTGCATTTTTACTTGCCCCcccatgttttgtttatattctgCTGGGAATAAATGAAATAAGACAACACAAACCATG

Function

GO:

id name namespace
GO:1901838 positive regulation of transcription of nucleolar large rRNA by RNA polymerase I biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0005730 nucleolus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65049 lncRNA downstream 935 9281515 ~ 9282468 (-) True G43916
TU65048 lncRNA downstream 2001 9280931 ~ 9281402 (-) True G43915
TU65036 lncRNA downstream 7331 9275640 ~ 9276072 (-) True G43906
TU65024 lncRNA downstream 18829 9264327 ~ 9264574 (-) True G43894
TU65022 lncRNA downstream 20794 9262403 ~ 9262609 (-) True G43892
TU65157 lncRNA upstream 86066 9385109 ~ 9729660 (-) True G43991
TU65182 lncRNA upstream 280653 9579696 ~ 9915583 (-) True G44010
TU65205 lncRNA upstream 593188 9892231 ~ 9898950 (-) True G44031
TU65186 lncRNA upstream 624182 9923225 ~ 9926256 (-) True G44014
TU65187 lncRNA upstream 628188 9927231 ~ 9928405 (-) True G44015
XM_043241779.1 mRNA downstream 287770 8971674 ~ 8995633 (-) True srp68
XM_043241665.1 mRNA downstream 316023 8955256 ~ 8967380 (-) True evpla
XM_043241777.1 mRNA downstream 332230 8933083 ~ 8951173 (-) True acox1
XM_043241579.1 mRNA upstream 9543 9308586 ~ 9352668 (-) False si:dkey-237i9.1
XM_043241581.1 mRNA upstream 9543 9308586 ~ 9352668 (-) True si:dkey-237i9.1
XM_043241580.1 mRNA upstream 9543 9308586 ~ 9352665 (-) False si:dkey-237i9.1
XM_043241673.1 mRNA upstream 287382 9586425 ~ 9710598 (-) True LOC122346819
XM_043241799.1 mRNA upstream 479207 9778250 ~ 9781983 (-) True LOC122346913
TU65030 other downstream 11098 9271418 ~ 9272305 (-) True G43900
TU65029 other downstream 12481 9269188 ~ 9270922 (-) True G43899
TU65026 other downstream 16079 9266002 ~ 9267324 (-) True G43896
TU65020 other downstream 22158 9260616 ~ 9261245 (-) True G43890
TU64905 other downstream 569545 8712021 ~ 8713858 (-) False G43801
TU65247 other upstream 726535 10025578 ~ 10027635 (-) False c6h17orf67
TU65385 other upstream 842568 10141611 ~ 10145147 (-) False cd7al
TU65678 other upstream 1411002 10710045 ~ 10716741 (-) True G44358
XR_006251151.1 other upstream 1755992 11055035 ~ 11069458 (-) False brdt
XR_006251152.1 other upstream 1755992 11055035 ~ 11069457 (-) False brdt

Expression Profile