RNA id: XM_043242596.1


Basic Information

Item Value
RNA id XM_043242596.1
length 3649
RNA type mRNA
GC content 0.44
exon number 12
gene id atf7b
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19435181 ~ 19444611 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTGTGAGggagacatacaaaatgtgcagtggTTGGGTCCACGGGACAGGTTTGAGAGCGGAATTTTCACAACGGCCCCAAATCTGTTACGTAACGACTTAAATCTGGTTTTGAGTGTTACCTCAGCATATCGCGAGATTTACATATTGCGAGCAAGCTGGATGAAGGAGTTCCAAAGGTGGGAACGCGGAGAGAGGGAACgagcgagagagggaggagCAGGAAGTGACACAGGAAGTAGTTGATCTAAAATGGGAGACGATCGACCTTTTGTCTGCACTGCCCCAGGCTGTGGACAGAGGTTCACCAATGAGGACCATTTGGCAGTGCACAAACATAAGCATGAGATGACGCTGAAGTTCGGACAAGCTAGAACAGACACAGTTATTATAGCAGatcagACACCCACTCCAACACGGTTTCTTAAGAATTGTGAGGAGGTGGGTTTGTTTAGTGAGCTGGCTGGCTCCTTTGAGCAAGATCTTCGCAAAacacaggaggaggaggagaggagaattAAGGGCACGCTTCCAGCTCTACAGACACCCACAGAGGTTAAAGAGAGGGAGGGGCCTCTTGAGATTGACTCCTCCCCTCCAGACAGCCCAGACTCTGCCTCCAGCATGACAAACAGCAAAGATACAGTTGCAATGGCAAAAGAGCCTATTTCTATGAGGAAAGCCAAGGATGTTCCTCCACGAACTGCAGCAAGTTCCACCCCTACACCAACCATAGTGCGCCCAGGCTCACTCCCCCTTCACCAAGGATTCGACGCCATGAACCCAACTCAGCCCTCTCCCACCTCTGTCATTACCAGGACCCCTCCGTCAAACAGACTCAGTTCACCGTCTGGTTCTTTTCCCATGCTGATGCAGCTTCCAAATGGTCAAACTGTTCCTCTGCTGCCCAGTCCAGGGCAGACTTCAGTCATATCGcttGCCAGATCATCAAACCCAGTGCCCAATATCCCAGGGATTCCAGGCCCTCCTATTGGTGGGAGCAGCAGTGGCTCCTCCTCTCCGTCTGGATACAGTACACACTCGGATGCCAAGACGAGGCTAAAAGCAGCACTATCTCAGCAGAGTCCTAGTGGACCAGCACCAATACAAAAAACAGATCAGACTGAGACACCATCACCTGCTCAACCACAGGTGTCCCCTGCTCCACCAAAAGGAGGCCGTAGGCGACGAGGAGCAGATATTGAGCCGGACGAGCGCAGGCGTCGTTTTCTTGAACGGAACAGAGCTGCTGCTTCCCGTTGCCGGCAAAAACGGAAAGTGTGGGTCAATGCCCTGGAGAAGCGCGCTGAGGAGTTAGCTACTGCTAATGTTACACTCACTAGTGAAGTTTCTCtgctgaggactgaggtgacgCGTCTGAAGGAGTTGCTGTTGGCCCATAAAGACTGCCCTGTTACTGCAATGCAGAAAAAAGCATATCTCGCTGCAGGAGTGGATGAGAGTTCAGCGTCGGCGTTGGTGATGCCCGTGTCAGTACCGGCTCCGGTGTCGGTTAACGGTCTGAGCGTGCGTGCGGCAGAGGCTGTTGCTGTTTTAGCGGGAATGGGTTCGGGTCAGTGGAGTAACGCAGCTGGAGATGTTTCCTCCCAATCGCAACCCACATCCAGATGATGAGCATGTCGTTCAGCCGATGGGAACTAAATATACTCTCAAAGGAGCGAATCTACCTTTTTCCCCTCGAACTGTCAGTTCTGGTGTTTTTGTAAATGCTCTCATGTGACAAATGGGAACCGATGTTACCGCGCTCTGACCACACCCTGCTCACCCGTAGCCTATCACAGACTCTCCCCGAGGCCAAGTAGTGACATCATAAGGACGCCCCTGTCAGACTGCACAGGCTAGGAAGCACCGCTGTGGAAATGAAGTCTCTTCTGTCATCTCTATAAAATACACCTTTACATATACTTGTATAGATCTTCTCACTAATGCATTGAGTTGATATTTGTCTCGTTTGcaggtattttttaattattttgcgtTTTATTCAATGGTTTTCTAATATAACGATTCGTTGCATGATTCTGGCCACATTAGAAAGACGATTACTACACTATGCAGATAAGTTTAACACCTACTTTCGCACTTGGTGACGCTATCTCATACATGCGCTTTTCCCATCTCTCCCAGTTTCTCTTTCTCGCTTTTCCTCGCTGTCTTAATTTTACTGTCGTATCTAAAGTAATTTCTCTCAGGTCCGTGCTTCTGTTGCTATTTTGGTGAAGATCGTGTCTCTCTCACATTAGCATAACCTGGCACCGCAGAATGGACTCTCAATCGCTTAAGAATggagagaaaatatatttttatatttaaatatcgtTATTGCTTTGTCTGCATAATGGATATAACGGGTAGCGTAACCACGTGGACATGTTTTAGATCAGTATGATTATGATATGCTCTGCTGAATTATAGGTATCTTTaaccaaaatacataaatcctTTTTCATTAGAGGTTAGACCCCAAAGTTGAAGTGCATCTGGTCTCATAACAGGGAACTCACGCACAAAAACTCACACGTAATGACTTGTGCTTGCGTTTTGTGAATGTACAGTAGTTAACTAACCCGGCTATGAATGTGAAGTCTTGTTTCAAATTGGTTGAAATGCTTTTGAATACGTGATAGGATGGtgttatagaaataaaacattgttatttCTTTGTTGTGGCCTGAAAGACTCACATTTGGCCACCCTGAATGAATTTCGTCTGGCGCGCATAACTAATACATAACTTATTGAGTTGTATTCCATTACACAGTTCATGCCTGAACGCTTTTTTAAATTAGGATAATCTGTGTTAGTTTAAGCTTGGCTTTTATATCAAGTAGAAGCTAATTTCTGCtacataaggaaaaaaaaacgtgcagTGATAAATCAATGCCACTGACCTGGAAGTTAAAAATGTGAGATACAGTCATAATTATGGAATACAAAGtcaaaattgcataaaaagtcaattttttttgttacagtttaATGTCCttgatactttttttattcttataattatgatttaccAAAGCATAACTTTTCTTATGTAGAGGAAATTGTCTTCATTAGATTGTGGACAGTGGCATCTTTTTTCTACTCATTGATTAGATGATGTGTAGTTTAtatcgtatttttttttttgtcgtttgttttttttattttgttaatgatCCAATCTGCCATATCAGTTTCTGTCACTGACCTTCCTTGCATCTGGATTTATCTTATTTGGATGTAGAACGTACTGCTTTCCACGGTGTGTATAACTCACTGATCCCAAAATTGTGTAATGTGTAAGTGAAGCCCTTAAACTAGAGCTGTAAATATGAAATGAGTGTCGGCGTACAAACATTGCTTACTGTATGATATTGACTAACTGAAACGGTCCTTAAGATATGTTATAATTAAACATCGTTGGAACTCTAGCCTCTTGTAAATTCAATGAGATGCATTGAGCTGGTTTTCTGCAATATTTCTCATCTTGTTGTGAAGGTGTTGTTTTCCTCTGTGTATATAGAGTCGGTACGGTGGGATTTGTGTGCGTGACTGCTCTGTGTGGAATAGCTTGAATGAGCTGCATATGCATTGTGCTGTTTATCAGCGTGACTGATATATTATAAACCATATAAACCTTG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68953 lncRNA downstream 37451 19393477 ~ 19397730 (-) True G46540
TU68955 lncRNA downstream 37451 19393477 ~ 19397730 (-) False G46540
TU68954 lncRNA downstream 37776 19393477 ~ 19397405 (-) False G46540
TU68898 lncRNA downstream 192370 19212639 ~ 19242811 (-) True G46509
XR_006251202.1 lncRNA downstream 283487 19149746 ~ 19151694 (-) True LOC122347223
XR_006251216.1 lncRNA upstream 161751 19606362 ~ 19607056 (-) True LOC122347383
TU69118 lncRNA upstream 347031 19791642 ~ 19792328 (-) True G46658
TU69107 lncRNA upstream 356632 19801243 ~ 19802266 (-) True G46647
TU69142 lncRNA upstream 389459 19834070 ~ 19838047 (-) True G46673
TU69300 lncRNA upstream 396868 19841479 ~ 19842967 (-) False tomm6
XM_043241079.1 mRNA downstream 968 19414227 ~ 19434213 (-) False dip2bb
XM_043241078.1 mRNA downstream 983 19404467 ~ 19434198 (-) False dip2bb
XM_043241077.1 mRNA downstream 983 19404467 ~ 19434198 (-) False dip2bb
XM_043241075.1 mRNA downstream 984 19404467 ~ 19434197 (-) False dip2bb
XM_043241074.1 mRNA downstream 984 19404467 ~ 19434197 (-) True dip2bb
XM_043242585.1 mRNA upstream 3417 19448028 ~ 19461259 (-) True larp4ab
XM_043242586.1 mRNA upstream 3417 19448028 ~ 19461257 (-) False larp4ab
XM_043242587.1 mRNA upstream 3417 19448028 ~ 19458219 (-) False larp4ab
XM_043240974.1 mRNA upstream 17780 19462391 ~ 19464546 (-) True pfdn5
XM_043242838.1 mRNA upstream 20703 19465314 ~ 19477556 (-) False espl1
XR_006251201.1 other downstream 285451 19115061 ~ 19149730 (-) False vdrb
TU68851 other downstream 379050 19055146 ~ 19056131 (-) True G46478
TU68756 other downstream 717693 18714174 ~ 18717488 (-) True G46423
TU68751 other downstream 790047 18644306 ~ 18645134 (-) True G46420
XR_006251187.1 other downstream 1661074 17743715 ~ 17774107 (-) True opa1
TU68985 other upstream 108708 19553319 ~ 19555931 (-) False tsfm
TU68987 other upstream 108708 19553319 ~ 19555931 (-) False tsfm
unassigned_transcript_1266 other upstream 221823 19666434 ~ 19666506 (-) True trnaf-gaa
TU69304 other upstream 398433 19843044 ~ 19847398 (-) True tspo
XR_006251194.1 other upstream 651778 20096389 ~ 20102458 (-) False srsf3a

Expression Profile