RNA id: XM_043242668.1


Basic Information

Item Value
RNA id XM_043242668.1
length 1988
RNA type mRNA
GC content 0.46
exon number 15
gene id LOC122347419
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 16272017 ~ 16277301 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGTATCCGTATTTAAAGGCGCCAACAAAGACTAATTCAGGAACAGCTTCACAAACCTGCCATCTGTACTCACATCATCCAACAGCACACtacagcttattttatttaacgcAATAAAATGCCCGAGGAAACAGCAGCTGCTTCAACTGCCGAAAGCATGGAGGAAAAACCTTGCTCGTCAAGCGCTGCAGACAGCTCCGTCGATGTTTCCGAGGAAGCTAAGAAGCTCATTGGCACAGGCAACCGGCACTTGGTGATGGGTGATGTTGTGTCTGCAGTCAGTGTGTTCCAAGAGGCTTGTGCCATGCTAGCTGAAAAGTATGGAGACACGGCTGATGAATGTGGTGAAGCTTTTTTCTTGTGTGGAAAAGCCCTTCTGGAGCTTGCCAGGATGGAGAATACTGTACTTGGTAATGCTTTAGAGGGAGTCCCAGAAGAATCCTCTGAGGAGGGCGAGAAACAGAATGACTCTAAGATTGAAAGTGCAGACAACTTGGATGAGAAAACCAGAGATGAGCTTCGAGCACAGGTTTATGATGCCATGTCAGAGGACAAAAATCAGTCAGAGGTAGAAAAAGAGGAGGGGGAAGGCAAGCAGAACCAAGAGGAATTTAAGGAGAAGCAGGAGATGGTTGAAGCACCAAAAGAAGGGGATGCAGCATCAATTAAAACTGAGAAACCAACTGAAGACGAGGCGCAACCTACTGAAAATGAGGCAAAACCTGCTCAAGATGAGGAGAAACCAGCTGAAGACGAGGCAAAACCTGCTGAAAATGAGAAACCTACTGAAAAAGAGATTGAGAAATCAGGCGTGGATGAAAGTGCTACTAAAAAGGAAGAGGTCACAGTGTCAAATGGAGTAACTGAAAAGGTTGAGGAGAAAAATGGAAATGAAGAGAATGAAGAACCCATGGAAGAGGATGGAGAAGatgacgacgaagatgatgatgaggaggaggatgatgatgacgaAAATACAGAGGGTGAAACAAAAGATAAgGAAAGTGAGGAGGATGAAGTTGGAAACCTGCAGTTGGCCTGGGAGATGCTTGAGGTTGCAAAGGTGATTTACAAAAGaaaaGACAGCAAAGAAGATCAGTTAATGGCGGCACAGATTTACCTAAAACTTGGAGAAGTTGGAGCTGAATCAGgTAACTACAGCCAGGCCCTGGAGGACTTCAATGAGTGTTTAACCTTGCAGCTGAAACACCTTCCCTCTCATAGTCGTCTTCTGGCTGAGACTCATTACCAGTTGGGCACAACTTACAGCTACACAGCCCAATACAGCCAAGCCATTGAGCACTTCTCCAACTCCATCAAAGTCATTGAGAGCCGTCTTGCTATGCTTCAGGAGGTAATAGACAAGGCAGAAGGTGCAGAGGCAGCAAAGGAGGAGAAGAACGAGCTTGATGAGTTGAAACAGTTACTGCCAGAAATCGCTGAGAAGATTGAAGATGCCAAGGAGAGCCAGAGGACCGCTGGTGCAGCATCTGAGGCCATCCATCAGACCCTTGCGGGAGCATCCACTTCATCTGCGTTCCCAGCTGAAAATGGCGGCCCATCCTCATCTACTGCAAGTCAGATTTCCGTGAGGCCAGCCGATGCTGCATCTTCATCAAAATCTGCTTCTGACATTTCTCACCTTGTCCGCAAAAAGAGGAAACCAGACGAGGAGAGTCCAAAAAAGGACAGTGATGCTAAAAAGACTAAACAGGAGACCTCATTTAATGGCAGCGGTGACTCCGCCCACAACGGCAATGGAGTCCAGGAGAAAATGGAGCAGGAGCCAGCCAGTTCTTCCTCTGTGGAGACATCAGCGTGATGAACATCATCTGATTGACCACTTACCTTCCAACCAGCAGAGCATGCCTGCCTCATACTCTCCACGAACaactttttgtctttgttttgtaaataagtTCTTTTTGTCTGTCcaatttttgtataattgtagTAAACTTTCAATAAAGGATATTTGCATATGTGAA

Function

GO: NA

KEGG:

id description
K11291 NASP; nuclear autoantigenic sperm protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67717 lncRNA downstream 909 16270902 ~ 16271108 (-) True G45753
TU67716 lncRNA downstream 2625 16268915 ~ 16269392 (-) True G45752
TU67715 lncRNA downstream 4475 16267183 ~ 16267542 (-) True G45751
TU67664 lncRNA downstream 153431 15941258 ~ 16118586 (-) True G45709
TU67746 lncRNA upstream 43113 16320413 ~ 16322805 (-) True G45770
TU67946 lncRNA upstream 910156 17187456 ~ 17187794 (-) True G45897
TU67960 lncRNA upstream 966380 17243680 ~ 17246369 (-) False LOC122347244
TU67974 lncRNA upstream 1135738 17413038 ~ 17414139 (-) False brinp3a.2
TU67995 lncRNA upstream 1237338 17514638 ~ 17518605 (-) True G45930
XM_043241360.1 mRNA downstream 15937 16254641 ~ 16256080 (-) True tmem69
XM_043241361.1 mRNA downstream 18177 16152146 ~ 16253840 (-) True mast2
XM_043242475.1 mRNA downstream 506910 15756309 ~ 15765107 (-) True LOC122347279
XM_043242474.1 mRNA downstream 576483 15691262 ~ 15695534 (-) True LOC122347277
XM_043241258.1 mRNA downstream 586532 15656736 ~ 15685485 (-) True LOC122346545
XM_043242788.1 mRNA upstream 557 16277857 ~ 16280917 (-) False akr1a1b
XM_043242787.1 mRNA upstream 557 16277857 ~ 16280752 (-) True akr1a1b
XM_043242790.1 mRNA upstream 557 16277857 ~ 16280369 (-) False akr1a1b
XM_043242791.1 mRNA upstream 4089 16281389 ~ 16284146 (-) True prpf38a
XM_043242785.1 mRNA upstream 14895 16292195 ~ 16298925 (-) False mpl
TU67689 other downstream 211551 16059893 ~ 16060466 (-) True G45731
TU67688 other downstream 212250 16058968 ~ 16059767 (-) True G45730
TU67521 other downstream 666547 15603910 ~ 15605470 (-) True G45606
TU67455 other downstream 941200 15328967 ~ 15330817 (-) False LOC122347580
TU66983 other downstream 2078851 14160475 ~ 14193166 (-) True G45257
TU67772 other upstream 83900 16361200 ~ 16364020 (-) False fam183a
TU67937 other upstream 539340 16816640 ~ 16830208 (-) True rgs8
TU67944 other upstream 909389 17186689 ~ 17187318 (-) True G45895
TU67962 other upstream 1030515 17307815 ~ 17308478 (-) True G45910
XR_006251188.1 other upstream 1466415 17743715 ~ 17774107 (-) False opa1

Expression Profile