RNA id: XM_043242692.1


Basic Information

Item Value
RNA id XM_043242692.1
length 2665
RNA type mRNA
GC content 0.42
exon number 12
gene id atg4c
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14907367 ~ 14914995 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCAGACGCCAGACGGGAGAACATATGAAATACCGCGAGACCGAACGAGATGACCGCTTCCtcaaaatgtaaacagacaAGAGTAGATGCGCTGTGAGTTAAGTATAACAAGACATGTGAGCAGAAACGCCATCGTATGAGCTGTGATGGGTTCTGCTCCGTGGCTGAGAAAATGGAGACTAAAGAGACCGACGAGGTGGAGAAACTAAAGTCCAAGTTCATGTCAGCATGGCACAATGTGAAATATAGTTGGGCTCTTAAGTCAAAAACCGCCTTCAGTCGTAATTCTCCTGTTTTCTTGTTGGGGAAATGCTACCACTTCAAGGCTGTGGATGACGAAAGCCCTACTGAGAGTTATACTCCTGATGCATTAGATGACGATATTGTCACAGGGAATGTTGATGGATTTCGCAAGGACTTCACCTCACGAGTTTGGCTGACCTATCGAGAAGAGTTTCCTGCTCTTCCTGGCTCCTCCATCACTTCAGACTGCGGGTGGGGTTGTACACTCCGGGCAGGGCAGATGATTTTGGCCCAGGCTCTCTTGCTTCACATCTTGGGTAGAGACTGGACCTGGACAGAAGCACTGACCTTGGAGCCCCTAGATACGGAGACATGGACCAGCAGTGCAGCACGGAGACTAGTGGCCACGTTAGAGGCTTCCATTCAAGGGGAAAGAGCGCAGGTCACCCAGCCCATCTGTGCTGCTCAAGGAGGGGCTGAGGAGGCGGATTCGTACCTGCAAGAGGAATCTCACCGCACCATTGTGTCCTGGTTTGGGGATACACCCTCGGCCCAGCTGGGCGTCCACAGACTAGTGCAGCTAGGAATGACATCTGGAAAACGGGCAGGAGATTGGTACGGGCCAGCAGTGGTGGCACACATACTCCGAAAAGCTGTTGATGAAGCAGTAGATACGATGCTGAAAGGGATAAGCGTTTATGTAGCGCAGGACTGCACCGTGTACAGTGCTGATGTTATCGATAGCCATTCAAAGCAGACAGGCAGCCACGGTGATCCTCAGGGACTCAATCCTGGAGCTGCCCCTGATAGTAGAGCTGTGATCATCCTCATTCCTGTGAGACTCGGTGGAGAGAAAATCAACCTGGAATACTTGAGCTTTGTCAAGAGCATACTAAGCTTAGAGTACTGTATCGGCATCATTGGCGGAAAGCCTAAACAGGCCTACTATTTTGTGGATTTCAAGGATGACAGCTTGATTTACATGGATCCTCATTACTGTCAGTCTTTTGTGGATGTCAGCACAAGCGATTTCCCTCTGCAGtcTTTTCATTGCCCATCACCAAAGAAAATGCCTTTCAGTAAAATGGACCCAAGCTGCACAGTTGGATTCTACTCAAAAAATGTTGAACACTATGAAAGAATCAGCAACGAGCTGTCAAAGATATTGCAGCCTTCGTCAAAAGAGAAGTACCCTGCGTTCACCTTTATGAAGGGACACGGGAAGGATTATGAACTTTCGGTTGCTGTAGAAAAGCGAGAATGGCCTTTCATCAGGGACACAAGGAAAGCAGGGTCAACATCGGGAGACTTTGTGCTGCTCTGACTCCTCAAGACAGTAACCCAAAACCAAGTGGAGACTGGATCGGTCTGTATTTACACTGTGAGTCTGAACTATACGACCCTGTGCTACACTGTTCTCGTGCCAtttcacaaaaattatttaaaaaaaaagagcaagtaGTGCATGCGTTAGCTTCACGGAGTTGACCGAATGATTGCTTCACGCATATGGCCCTGACCACCCACATTTGATTTCAACCTAAACCTGCAAACATTTCAGTAAATACAGTGAACATGTGTGGTcaatacatgtatatttttaacaagaaaagTTGTCATTGAATCATGTGGGTACGTGTagatagtatttttttttttttttttttttttaactgaatcaAAACGCCTATATAGTCTACTTTTTGaagtttataaatgatttaactTCACAGAGCTTACGTTTTTTTATGGTGGcatgttttatgttatgttaactGGAAGGATAATGTGCCTTCGCAAGTGAAAACACTGTatcacatataaacacagatcctaaataactatatttaaaaagccCTTTTTGCCACCtgctttttatgaaataatagcACACTGATATACACAGAAACTGTGTTTAATATACGATTAAGTACAGTGATGTTAACAACAAATATGTGGAAGGATCAGTCCTTCCCTGGTAACTCAGTGTGttacttttaaagaaaaccCGAATGAATCAAGGAGCAATTTATCGTTAAATTATGCCttatttataaaactttttttcttggtgatatatcattttaacacaattttcAACATGATGATGTTACACTGTTAtgattaacttttatttttattagaaataccTATGAAACCAAAGCACTCTGCATTGAACAGAACCAACACTAGCTCTAACACAGTGTCACACATTGTATTTAACCAGCGTGATTgcgttttctgttatttatgcAAAACGTATTAATTCCAACCATTCGTCAATTTGAAGGGTTTTGTAATTCACCAGAGCATATTGTAATATCATACCTTAATTGCCAAAAATCACAACAAGCATTTCAGTTTTATAACTGCTGATTTGTACAATTGTacaataaatctaaatctaaatctaatatggttt

Function

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0015031 protein transport biological_process
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K08342 ATG4; cysteine protease ATG4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67118 lncRNA downstream 1659 14905502 ~ 14905708 (-) True G45355
XR_006251130.1 lncRNA downstream 251336 14651716 ~ 14656031 (-) False LOC122346442
XR_006251129.1 lncRNA downstream 251336 14651716 ~ 14656031 (-) True LOC122346442
TU67022 lncRNA downstream 413345 14493121 ~ 14494022 (-) True G45277
TU67012 lncRNA downstream 628341 14263867 ~ 14279026 (-) False LOC122346673
TU67394 lncRNA upstream 187695 15102690 ~ 15154616 (-) True G45532
TU67412 lncRNA upstream 270157 15185152 ~ 15239640 (-) False G45543
TU67413 lncRNA upstream 270157 15185152 ~ 15213632 (-) True G45543
TU67416 lncRNA upstream 270157 15185152 ~ 15221025 (-) False G45543
TU67419 lncRNA upstream 318272 15233267 ~ 15235455 (-) False G45544
XM_043242976.1 mRNA downstream 94743 14805304 ~ 14812624 (-) True foxd3
XM_043242738.1 mRNA downstream 105513 14789676 ~ 14801854 (-) True alg6
XM_043242739.1 mRNA downstream 105544 14789676 ~ 14801823 (-) False alg6
XM_043242114.1 mRNA downstream 126638 14770982 ~ 14780729 (-) True efcab7
XM_043242115.1 mRNA downstream 137470 14762711 ~ 14769897 (-) True pgm1
XM_043241194.1 mRNA upstream 9144 14924139 ~ 14929125 (-) True angptl3
XM_043241192.1 mRNA upstream 42034 14957029 ~ 14962572 (-) False usp1
XM_043241191.1 mRNA upstream 42034 14957029 ~ 14962572 (-) True usp1
XM_043241229.1 mRNA upstream 167223 15082218 ~ 15086566 (-) True mafaa
XM_043241713.1 mRNA upstream 177144 15092139 ~ 15120613 (-) True LOC122346854
TU66983 other downstream 714201 14160475 ~ 14193166 (-) True G45257
TU66636 other downstream 1226093 13668528 ~ 13681274 (-) False tmem131
unassigned_transcript_1263 other downstream 1439428 13467868 ~ 13467939 (-) True trnaa-cgc_55
unassigned_transcript_1262 other downstream 1439802 13467494 ~ 13467565 (-) True trnaa-ugc_115
unassigned_transcript_1261 other downstream 1440141 13467155 ~ 13467226 (-) True trnaa-ugc_114
TU67455 other upstream 413972 15328967 ~ 15330817 (-) False LOC122347580
TU67521 other upstream 688915 15603910 ~ 15605470 (-) True G45606
TU67688 other upstream 1143973 16058968 ~ 16059767 (-) True G45730
TU67689 other upstream 1144898 16059893 ~ 16060466 (-) True G45731
TU67772 other upstream 1446205 16361200 ~ 16364020 (-) False fam183a

Expression Profile