RNA id: XM_043242693.1


Basic Information

Item Value
RNA id XM_043242693.1
length 3644
RNA type mRNA
GC content 0.45
exon number 17
gene id ddr2a
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 16618572 ~ 16647615 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctctctctctctctttttccccctCATCCAGCGGTGTCTTACATCAGCTTACTGTGCCTGAATGTCTGAAAGAGAGATtcggagagaaagaaaaagcctTGTTTTTATCTTCCCGATTATAAACACGTTACTTGGAACTAAGAAATCATTGGACAAATGGTTTGAAAACAGCAACCCAAGCAGAATGAACGTCCCGTCTCCGCCTGAGATGAAGCAGCTTTGGAAGATGCTCTTTCCGCTCCTTATCCTCCTTTACCTATCGGGAGCTGTCAAGTCTCAAGTAAATCCAGgtGTGTGCCGGTCTCCATTAGGAATGTCCAGAGGCCAGATCTTAGATGAAGATATTTCAGCTTCCAGTCAGTGGTCTGACTCCACAGCAGCAAAATATGGCAGGCTGGACTGTGAGGAAGGAGATGGTGCGTGGTGTCCTGAGATCGCAGGAGAACCTGAGAATATGAACGAGTTCCTGCAGATAGATCTTCGTTCTCTGCACTTCATCACTCTAGTGGGCACTCAGGGACGTCACGCGGGGGGCATTGGGAATGAGTTTGCCCAGACATACAAGATCAAATACAGCCGTGATGGCAGCCGCTGGATCTCCTGGCGCAACAGACAGGGCAAAGAGGTGATTGAGGGAAACAGGAATGCTTATGACATTGTGCTGAAGGACTTGGAGCCGCCCATCATTGCACGTTTCGTCCGCTTCATGCCCGTCATCGATCACTCCATGAACGTTTGTATGCGTGTGGAACTGTACGGGTGTGAGTGGCTAGATGGCTTGGTTTCATATAATTCTCCACATGGCCAGCAGATGACTCTCAATGGACAGCACATTTATCTCAATGATTCAGTGTACGATGGAGCCATGAGTCACAGCATGACCGAAGGACTCGGACAGTTGACGGATGGCATGTGTGGCCTCGATGACTTCACACACAGTCACGTCTACAATGTATGGCCTGGTTATGACTACATCGGCTGGACCAACGAGAGCTTTCCCAGTGGTTATGTTGAGATCATGTTCGAGTTTGACCGCACCCGCAACTTCACCACCATGAAGGTGCACTGCAACAACATGTTCTCCCGAAGAGTGAAGACCTTTCAGAAGGTGGTGTGTTACTTTCTCTCGGACTCGAACTGGGAAGCTACACCCGTATCGTTCAGCCCCGTGATGGATGATGTCAACCCCAGTGCGCGCTTCGTCACCGTCTCGCTCTACAATCACATGGCCAGTGCTATTAAGTGCCAGTACTACTTTTCTGACATCTGGATGATGTTTAGCGAAATCACCTTCCAGTCAGATACAGCCATGTACAACACAACCCTGACTCCCCCCAAAACCGGACCTCCCATCAGCAATCTACCAGGGGATGACCCCACACACAAAGTAGATGACAGCAACACCCGGATCCTCATTGGCTGTTTGGTCgccatcatcttcatcttagtggccattattgttattatactatGGAGACAAGTTTGGCAGAAGATGCTTGAGAAGGTGTCTCGGAGGATGCTGGATGATGAACTAACTGCTAGTCTGTCAATACAGAGTGAGACCTTCAcctataacaacaacaacagcccCTCTTCAGTGCCCAGCGAGCAAGAGTCCAACTCCACCTACGAGCGAATCTTCCCTCTGGGACCCGACTACCAAGAGCCCTCCCGTCTGGTTCGCAAACTGCCAGAATTTTCCCAAACCTCAGAGGACACCACTTCAACAAATACAGCTTCCAAGTCCACTCCAGCCGGTGTACAAGAGGGGGTCCCACATTATGCTGAGGCAGACATCGTAAACCTACAAGGTGTAACTGGGAGCAACACTTACGCAGTGCCTGCCCTCACCATGGACCTGCTGTCAGGAAAGGATGTCGCTGTGGAAGAATTTCCTCGGAAGCTGCTTACTTTTAAAGAAAAGTTGGGAGAAGGGCAGTTTGGAGAGGTGCATTTGTGTGAAGCAGAAGGCATGCAAGATTTCATGGACGAGGACTTCTCCTTCGATGTCATTGAAAACCAAACAGTGCTCGTAGCTGTTAAAATGCTTCGAGCGGACGCGAATAAAAACGCTAGaaacgATTTCTTGAAGGAGATAAAGATCATGTCTCGATTGAAAGACCCCAACATCGTCAGGCTGCTGGCGGTGTGTATGAGCTCTGACCCTCTGTGTATGATCACAGAATACATGGAGAATGGAGACCTTAATCAGTTCCTGTCTCGCCATGAGCCTGAGGGCATGATTGCTCTCCTCAGCAATGCTCCCACAGTCAGCTACAGTAACCTACACCACATGGCCACACAGATTGCTTCAGGCATGAAGTACCTATCATCACTCAACTTTGTGCATCGAGACTTGGCCACACGCAACTGCCTAGTAGGAAAGAACTACACCATAAAGATTGCAGACTTCGGGATGAGTAGGAACCTGTATAGCGGAGACTACTACCGTATCCAGGGCAGAGCGGTGCTGCCCATCCGCTGGATGTCCTGGGAGAGCATTCTTCTGGGGAAATTCACCACATCCAGTGATGTGTGGGCTTTTGGCGTAACCCTTTGGGAGATGCTTACCTTCTGCAAAGAGCAGCCTTACTCGCAGCTGTCAGATGAGCAGGTCATTGAAAACACAGGAGAGTTCTTTCGGGATCAAAGAAGACAGATATACCTGCCACAGCCACCAATGTGTCCTGACCCTGTCTACAAGCTCATGTTGAGCTGCTGGAACAGGAACACCAAAGAGCGTCCATCTTTCCAGGAGATTCATCACACGTTACTGGATTGCAAGCCGTAATGTCCACTTATGTGCCAACCTTGGCACTTCCAGAGACATTTCAGTGCGCCCACAGGACTCCAGTCAACTACACACCATAACACATACTTATGTTTCCATATATAAGTGAGTTCAGAATCTATCATTTTTCTGTAGCAATTTTTACTGTGAGTGTGCAAAGGCAAACTGATTTATATTGTACGATTGAACTACACCCCCTAACTAAGTGCCTTCAGCTGGCTTACAATACCTGGGCAGCATTAGGACAAAGGAAATGTAGCAATTAATTAAGGCACCTTTAGTAAAAAAGAATTGGATTTTACACATTGTGTATTTTCTTCAAATaactctaaatattttaaaatatctattagATTATTGAATTGAAAAAACAAGTAATCGGctacttttattatttccaatttaatgttgttttcagtgttttgaggCCGAAGACAGCTTGAATGTAAATAAGAACCATTAATTGGCATTCAGATTCACCTTTGGTTTTATCTTGATGTCTCTtgatgtttgtgtatattttcatctcatttattgaaaatgctaaagtattttattattttacttttttttttctctttgtagtAAACTACAAAGACCACTTGCACTCAAGTGGATTAGCAGAAAGCCAATTTATCTGGTTGTCACagaatttcaaattcaaaatcagaaaaaaatcaattaaaattgtacatgtaaaaatatatattagcgTTATCCTGCAACTACCTAtatgttgtgtttatatttaagcatacttcttgttcttcttgttttattgTCTTAAGAATCTGTTAGGGTGATAATGGTTATTATTTAAGtccatttaatttgtgctcttttattttttcct

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007155 cell adhesion biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG:

id description
K05125 DDR2, TKT, CD167b; discoidin domain receptor family member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67746 lncRNA downstream 295767 16320413 ~ 16322805 (-) True G45770
TU67717 lncRNA downstream 347464 16270902 ~ 16271108 (-) True G45753
TU67716 lncRNA downstream 349180 16268915 ~ 16269392 (-) True G45752
TU67715 lncRNA downstream 351030 16267183 ~ 16267542 (-) True G45751
TU67666 lncRNA downstream 499986 16058245 ~ 16118586 (-) False G45709
TU67946 lncRNA upstream 539841 17187456 ~ 17187794 (-) True G45897
TU67960 lncRNA upstream 596065 17243680 ~ 17246369 (-) False LOC122347244
TU67974 lncRNA upstream 765423 17413038 ~ 17414139 (-) False brinp3a.2
TU67995 lncRNA upstream 867023 17514638 ~ 17518605 (-) True G45930
TU68086 lncRNA upstream 1160006 17807621 ~ 17808115 (-) True G45993
XM_043241042.1 mRNA downstream 1373 16610280 ~ 16617199 (-) True hsd17b7
XM_043241680.1 mRNA downstream 8909 16603295 ~ 16609663 (-) True serbp1a
XM_043241681.1 mRNA downstream 8910 16603295 ~ 16609662 (-) False serbp1a
XM_043242455.1 mRNA downstream 40509 16571144 ~ 16578063 (-) True slc35d1a
XM_043242411.1 mRNA upstream 1850 16649465 ~ 16659733 (-) False uap1
XM_043242410.1 mRNA upstream 1850 16649465 ~ 16659733 (-) False uap1
XM_043242409.1 mRNA upstream 1850 16649465 ~ 16659733 (-) True uap1
XM_043241907.1 mRNA upstream 28670 16676285 ~ 16683433 (-) True LOC122346973
XM_043241906.1 mRNA upstream 39763 16687378 ~ 16764274 (-) True nos1apa
TU67772 other downstream 254552 16361200 ~ 16364020 (-) False fam183a
TU67689 other downstream 558106 16059893 ~ 16060466 (-) True G45731
TU67688 other downstream 558805 16058968 ~ 16059767 (-) True G45730
TU67521 other downstream 1013102 15603910 ~ 15605470 (-) True G45606
TU67455 other downstream 1287755 15328967 ~ 15330817 (-) False LOC122347580
TU67937 other upstream 169025 16816640 ~ 16830208 (-) True rgs8
TU67944 other upstream 539074 17186689 ~ 17187318 (-) True G45895
TU67962 other upstream 660200 17307815 ~ 17308478 (-) True G45910
XR_006251188.1 other upstream 1096100 17743715 ~ 17774107 (-) False opa1
XR_006251187.1 other upstream 1096100 17743715 ~ 17774107 (-) True opa1

Expression Profile