RNA id: XM_043242699.1


Basic Information

Item Value
RNA id XM_043242699.1
length 2042
RNA type mRNA
GC content 0.44
exon number 14
gene id actl6a
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13684429 ~ 13690950 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCAAAAACCACCATAATCCCCTCAAGACAAAGATGTCTGATTCGTTTCCTTTGTTGTGATAGTGAAAATACAAATCGTACGGTTCTTATTTTGTATGCTCCCTTTTAAGATAAGAAATCGAACAGTTTTCTTCTGTCAGTATTGACCAGCCGCAAAAATGAGTGGCGGAGTGTATGGCGGAGATGAAGTTGGAGCTCTCGTCTTTGACATGGGCTCATATTCAGTGAGAGCTGGATATGCAGGAGAGGACTGCCCCAAGGCTGACTTTCCTACTGTGATTGGTGTAACTCTGGACCGGGAGGATGGCAGTACGCCGAtggagacagatggagagaaggGAAAGCAGAGCGGCACCACCTACTACATCGACACCAACCAGCTCAGGGTCCCTAGAGAAAGCATGGAGGTCATGTCACCTCTCAAAAATGGAATGATTGAGGACTGGGACAGTTTCCAAGCCATTTTAGATCACACCTACAAAATGCACTTCAAATCAGAGCCCAGTCTGCATCCAGTCCTGATGTCAGAGGCCTCGTGGAACACACGAGCAAAGCGAGAGAAGCTGACTGAACTAATGTTCGAGCATTACAACATTCCTGCTTTCTTCTTGTGTAAATCAGCCGTCCTGTCTGCGTTTGCCAATGGACGGTCCACTGGTTTAGTGTTAGATAGCGGATCCACACACACCACGGCTATTCCTGTGCATGATGGTTATGTCCTACAACAAGGCATCgtaaagtctcctctcgctggTGACTTCATGAGTATGCAATGTAGAGAGCTGTTTCAGGAGTTAGGTGTTGAAATAGTGCCTCCGTATATGATTGCATCCAAGGATTCAGTTCGTGAAGGCTCTCCAGCCAGTtggaagaagaaagagaaactaCCTCAAGTTACCCGTTCATGGCATAACTATATGTGTAATACCGTCATACAGGATTTCCAGGCCTCTGTGCTGCAGGTGTCAGATTCGCCCTATGATGAACAAGTAGCTGCCCAGATGCCCACTGTTCATTATGAGCTGCCTAATGGTTACAACTGCGATTTCGGAGCTGAAAGACTTAAGATCCCAGAGGGGCTTTTTGACCCTTCAAATGCTAAGGGCCTGTCAGGGAACACCATGCTTGGAGTCGGCCATGTTGTGACCACCAGCGTTGGCATGTGTGACATAGACATTCGACcagGTCTGTATGGTAGTGTGGTAGTTACAGGAGGAAACACTCTCATCCAAGGCTTTACAGACAGACTTAACAGAGAACTCTCGCAGAAGACACCACCAAGCATGCGTTTGAAATTGATAGCCAACAACACAACTGTGGAGCGCAGGTTTAGCGCCTGGATTGGAGGCTCCATCCTCGCGTCGCTGGGAACTTTCCAGCAGATGTGGATTTCAAAGCAGGAGTATGAGGAAGGTGGTAAACAGTGTGTTGACAGGAAGTGCCCTTAACCAGTTCCATCAACACCTGGTTGCCTTCAGAGGgagacgaagaagaagaaaaaaaagacaacaccCCACCATCTAGTAGAAAAAGCCTTCTTAGTGGACTCAGGAACTAACAAGGACagttactgttatttttagtgcAAACAGAccatattttaaacagtttgacATGGTTGCACTCTTTTCTACTCTTCAACACAATATTTTCATAGATCCAGTTTGACCACctgaataattttaaataccAGTGACAAGGTTGTCTTTTGGAACACTGGAGTTATATCCCTCAATTGTATCAGTGCTTAGAACACTtcaaagtgttcttttcttttcttttttacaccACTTTGCCACTTGCTAGAAAACGCACCCAGGAAACCAAATGTTTATGCTTTTAACAATTGATCGGCTGTTTTgggaataaattttttttttgttttgttttgttaaactgGTCTAAATTTCTCTCATATTACATAAAGACATAGAATCATCAGTGTAGTGATTGTGCACATTTGTATTTAAGCGTTTGTTCTAATAATTAGTACATTTCAGCTTGTCTATTCGGACAGTTATTAAAGTTATTCAAAAGAGAGAA

Function

GO: NA

KEGG:

id description
K11340 ACTL6A, INO80K; actin-like protein 6A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66600 lncRNA upstream 22332 13661812 ~ 13662097 (+) True G44998
XR_006251162.1 lncRNA upstream 26663 13656192 ~ 13657766 (+) True LOC122346715
TU66598 lncRNA upstream 33546 13650115 ~ 13650883 (+) True G44997
TU66580 lncRNA upstream 89828 13589986 ~ 13594601 (+) False LOC122346508
XR_006251135.1 lncRNA upstream 89892 13589885 ~ 13594537 (+) True LOC122346508
TU66675 lncRNA downstream 145657 13836607 ~ 13836819 (+) True G45056
TU66694 lncRNA downstream 169305 13860255 ~ 13860609 (+) True G45070
TU66717 lncRNA downstream 301795 13992745 ~ 13996966 (+) True G45075
TU66727 lncRNA downstream 325485 14016435 ~ 14128344 (+) True G45084
XR_006251242.1 lncRNA downstream 438397 14129347 ~ 14131078 (+) True LOC122347615
XM_043241552.1 mRNA upstream 29273 13652396 ~ 13655156 (+) True si:ch211-201h21.5
XM_043241549.1 mRNA upstream 40156 13638994 ~ 13644273 (+) True zgc:172121
XM_043241551.1 mRNA upstream 40156 13638999 ~ 13644273 (+) False zgc:172121
XM_043241547.1 mRNA upstream 40156 13639006 ~ 13644273 (+) False zgc:172121
XM_043241550.1 mRNA upstream 40156 13639011 ~ 13644273 (+) False zgc:172121
XM_043241043.1 mRNA downstream 2427 13693377 ~ 13696789 (+) True ndufb5
XM_043241818.1 mRNA downstream 6842 13697792 ~ 13722434 (+) True usp13
XM_043241819.1 mRNA downstream 6842 13697792 ~ 13722434 (+) False usp13
XM_043241821.1 mRNA downstream 6842 13697792 ~ 13722434 (+) False usp13
XM_043241822.1 mRNA downstream 6842 13697792 ~ 13722434 (+) False usp13
TU66465 other upstream 274517 13394229 ~ 13409912 (+) True G44887
TU66125 other upstream 575063 13108735 ~ 13109366 (+) True G44645
TU66063 other upstream 602310 13080610 ~ 13082119 (+) False smx5
TU66085 other upstream 903509 12766183 ~ 12780920 (+) False crocc2
TU65993 other upstream 1591974 12087399 ~ 12092455 (+) False G44588
XR_006251224.1 other downstream 281223 13972173 ~ 13979005 (+) False meltf
unassigned_transcript_1264 other downstream 389983 14080933 ~ 14081004 (+) True trnag-ucc_2
TU67192 other downstream 1545261 15236211 ~ 15238200 (+) False pomgnt1
TU67233 other downstream 1667911 15358861 ~ 15459386 (+) True G45419
TU67277 other downstream 1874031 15564981 ~ 15566668 (+) True G45448

Expression Profile