RNA id: XM_043242737.1


Basic Information

Item Value
RNA id XM_043242737.1
length 2642
RNA type mRNA
GC content 0.44
exon number 7
gene id hs2st1b
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 11734816 ~ 11786162 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAATAAAATCCCAGCGTTGAGTGACGCAGGAGAGCAGTGGACGCTCGGAGCCGCGCTGATGTGCAACAACTATAAGAGACCGAGAGTCAGGCGTCCCCGGTCTTAACAGAGCACCACCTTCAGCCAGCAGATGAGCGTCTGAAATGCCTTTGCTCGCGCTGATGTATTCGGTTACAACATCCGTAACTTTACTGTGTTCTCTACGCTTAAACGAGATCATCTGTCCGGAGTCGATATTACTGCTCCAGTAACGGATCGATCCGAGCTTCTCGTTCACATTTTACGGCATGACATGTAGATAATCATCCGGTACTTTGATGGGGCTCCTGAGGATCATGATGCCACCCAAGTTCCAGCTGCTGGCTGTTATGGCGTTTGGAGTGGCGATGCTGTTTATCGAGAACCAGATTCAGAAGCTGGAAGAGTCTCGGGCAAAGCTGGAGCGCACCATGGCCAGACACGAGGTGCGAGAGGTGGAACAGAGGCAGACGCGGGACGGCCTGCGGGAGTCTCCGGCGTTGCCTGAGATCGAAGATCTGATCATCATCTACAACCGTGTGCCCAAGACTGCCAGCACCTCCTTCACCAACATTGCATACGACCTGTGCGGAAAGAACCACTTCCACGTTCTCCACATCAACACCACCAAGAATAATCCAGTCATGTCTCTGCAGGACCAGATGAGGTTTGTAAGGAATGTGACATCCTGGCGAGAAATGAAACCGGGTTTCTACCACGGCCACGTCTCCTATCTGGACTTCACAAAGTTTGGAATCAAGGGGAAGCCGGTATACATCAACATCGTACGGGACCCCATCGAGAGGTTGGTGTCTTACTACTATTTTCTCAGATTTGGAGATGATTATCGGCCAGGCCTCAGACGGAGAAAACAGGGGGACAAAAAGACCTTTGACGAGTGCGTGTCATCTGGAGGTTCCGACTGCGCTCCCGAGAAGCTTTGGTTACAGATCCCGTTCTTCTGTGGCCATTACTCTGAGTGCTGGAATGTTGGCAGTAGATGGGCTCTCGAACAGGCCAAGTATAATTTGGTGAATGAGTATCTGCTCGTGGGAGTGACTGAGGAGCTGGAGGATTTCATCATGATGCTCGAGGCAGCGCTGCCACGATTCTTCAGAGGAGCCACCGAGCTCTACCGCACAGGTAAGAAGTCTCACCTGAGAAAAACCAGCGAGAAGAAACCTCCCACTAAAGAGTCCATCTCAAAGCTGCAGCAGTCCAATATATGGAAGATGGAGAACGAGTTCTACGAGTTTGCGCTGGAACAATTTCAGTTTGTGCGCGCTCACAGCGTCAGGGAAAAAGACGGAGAGCTTTACCTGCTGGCTCAGAACTTCTTTTATGAGAAAATCTATCCAAAAGTAAACTAGAATTGACATCAGCATGGTCCAAGCGTCTTTTGGCCTGTTCATGTACTGTTCTGTCACATTTACTgggaagagaagaaaaggaCTTACAACAATGTGGACACAAATACCTGGAAGTCCTTGACTAGAAGGGGTCAGAGGATTCAAAgtgggttgtttttttgtgttttttttgagagacCTCACACAGTCCTGACTGTGACGCTCAGTATCCAGCCACTTTAAGCCCAGTATCTTTTTATGGACTTGAAAACAACATCACATTTTCACCTGATTCATCATGCCTTCCAGAAGAAAATGACAGAAGCTCTTTGGCCATCAGTCActgttgtggaaaaaaaaaaatcaattttgaaCAGGGTCAAAAGGGTACTGCTTTTTGTACCAGACGTTTGGTACATTGGAGCACCTCCTTATTTTACTACTAACTGTGGTTTTGTGAATTCTTAACACTTTCTCGCATtgtgtatattcatttttaatagaatGCCATGAACAGTGTTTACAGACTTTAGTAAAGGCATTGTAGCCAGAGTTTAGAGAATGTGGTAAAACAGATTTCATATctgtaaaaaattttatttacatgtatattttatgtaattggACCAAATGGTTGTAAGAAATTCAAAGTTGTAGAGTTTAAAACTAGTTATTTAGAACATAGACATCTTTTGGGGACCCCACTGGTgcttgctttattttcttttctatttcgactttttttttttttctcattgcatCTCTTGAAGACTCCAAAATAATGAAACTCAACAGctgaatgaaagtgaatgaataAGAAACAGAAACTGACCTCCAAGACGAACTTTTGTTGTTTCGTTGTTCCAGAGACTGTTTTGGACAGGTACAAGACTACCTTTGCTTGCTTCCGTGCGAAGCCTTTTTCATCCAGAACAGGTTTCCTGAACGATTAAAGTATCATCTCGTAGTGTGGTACTGGTTTAAGGGTAGCTTGGTCTAAACGGGCTACCATCCTCTCACAAGTCGCAATATTGCATTTTACCTGAAGATAAGAAAGAAAGGCCCAAACCAACATTAGTTGTACACTCAATAGTGCCTTCATGAATCGTTCATTCCACTCTGGTTTCAGCAGTCGTTCGGATCATTTAAACAAAGTCTgtgtattaaattgtttttaaaactgccagctttccttttaaatttgcattttttctttttttttttttttttttttttttgtataaatcgtctcaaagcatttaaaataaactttac

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K02513 HS2ST1; heparan sulfate 2-O-sulfotransferase HS2ST1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65869 lncRNA downstream 306053 11428125 ~ 11428763 (-) True G44501
TU65799 lncRNA downstream 492310 11242277 ~ 11242506 (-) True G44460
TU65798 lncRNA downstream 492784 11241637 ~ 11242032 (-) True G44459
TU65796 lncRNA downstream 495352 11239119 ~ 11239464 (-) True G44457
TU65791 lncRNA downstream 496618 11237962 ~ 11238198 (-) True G44452
TU66210 lncRNA upstream 363672 12149834 ~ 12437749 (-) False G44705
TU66214 lncRNA upstream 363672 12149834 ~ 12198838 (-) False G44705
TU66215 lncRNA upstream 363672 12149834 ~ 12437749 (-) True G44705
TU66216 lncRNA upstream 363672 12149834 ~ 12437749 (-) False G44705
TU66217 lncRNA upstream 363672 12149834 ~ 12217207 (-) False G44705
XM_043242736.1 mRNA downstream 26336 11695648 ~ 11708480 (-) False lmo4b
XM_043242735.1 mRNA downstream 26336 11695648 ~ 11708480 (-) False lmo4b
XM_043242733.1 mRNA downstream 26337 11695648 ~ 11708479 (-) True lmo4b
XM_043241801.1 mRNA downstream 253623 11449837 ~ 11481193 (-) False pkn2b
XM_043241800.1 mRNA downstream 253623 11449837 ~ 11481193 (-) True pkn2b
XM_043241126.1 mRNA upstream 64096 11850258 ~ 11851231 (-) True sox14
XM_043241418.1 mRNA upstream 187303 11973465 ~ 11998495 (-) True hdlbpa
XM_043241419.1 mRNA upstream 187303 11973465 ~ 11997910 (-) False hdlbpa
XM_043242753.1 mRNA upstream 269730 12055892 ~ 12062418 (-) False stk25a
XM_043242757.1 mRNA upstream 269730 12055892 ~ 12062418 (-) False stk25a
XR_006251151.1 other downstream 665358 11055035 ~ 11069458 (-) False brdt
XR_006251152.1 other downstream 665359 11055035 ~ 11069457 (-) False brdt
TU65678 other downstream 1018075 10710045 ~ 10716741 (-) True G44358
TU65385 other downstream 1589669 10141611 ~ 10145147 (-) False cd7al
TU65247 other downstream 1707181 10025578 ~ 10027635 (-) False c6h17orf67
unassigned_transcript_1087 other upstream 186318 11972480 ~ 11972551 (-) True trnag-ucc_1
unassigned_transcript_1088 other upstream 186547 11972709 ~ 11972780 (-) True trnap-ugg_4
unassigned_transcript_1090 other upstream 1184921 12971083 ~ 12971154 (-) True trnap-ugg_5
unassigned_transcript_1091 other upstream 1185316 12971478 ~ 12971549 (-) True trnap-cgg_1
unassigned_transcript_1092 other upstream 1634485 13420647 ~ 13420718 (-) True trnaa-cgc

Expression Profile