RNA id: XM_043242739.1


Basic Information

Item Value
RNA id XM_043242739.1
length 1907
RNA type mRNA
GC content 0.45
exon number 14
gene id alg6
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14789676 ~ 14801854 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTCAGCCGACTCGGCTCTCTAGAAAAGCGCGAGCGATGCTGCAGGCttatgctttttaaatcaaacgTCTCGAAGGCTGCCAGACATGGAGAACTGGAGCCTCGTCTCACTGTGCGTTCTGCTCGCTTTAACGTCGAGGTGCAGGTAAACCGCCAATGTTCGGTGATTATGAAGCACAGAGACACTGGCAAGAAGTGACTTACAATCTACCTGTTCATGAATGGTACTTTAATACTACAAATAATGATCTGAGCTACTGGGGTCTTGATTATCCACCTCTGACGGCATATCACAGTCTGGTCTGTGCGTATGTAGCAAAGCTGCTCAATCCTGAATGGGTGGACTTGCATACGTCCAGAGGCTATGAAAGCCACTCACATAAGCTGTTCATGAGGGCCACGGTTCTTTTTACAGATGTTTTGATCTACATTCCAGCAGTTTTGCTTTACTGTTTCTACTTTTGCGATGGGTCCTCTAAACAAAAGGTTGCCACAGCTTTCTGCATCCTTCTGTATCCAGGACTTATATTGGTTGACTACGGTCATTTTCAATATAACAGTGTGAGCCTTGGTTTGACTCTATGGGGGATTTTGGCACTTGGTTTGGGCTGGGATGTGTTTGGTTCTTTGGCCTTCACTTTGGCTCTCAATTACAAGCAGATGGAACTGTATCACTCACTGCCTTTTTTCTGTTACCTCCTGGGCAAGTGCATCAAGCAGGGCCTGACTGGGAGAGGATTTATTCATTTGGTCAAGATATCGGTGACTGTACTGGTGACCTTTGCCCTCTGCTGGATGCCCTTTTTGTCCGACCCCAAACAACCTCTACAAGTTCTTCATCGCCTTTTTCCTGTTGATCGGGGTTTGTTTGAGGATAAAGTGGCTAACACATGGTGCAGCTTGAATGTGCTGATAAAGATCAAGACCCTGCTGTCCAGAGAGACTCAGCTGTTCCTCAGTTTTGCTCTTACTCTGTTGTTTGTCCTGCCTTCATCTTTGAAATTGTTGTCCAAACCCACTCTGTGGCAGTTTAAGCTTGCCTTGGTGAACACCTCCCTGgcttttttcctcttctccttCCAAGTCCACGAGAAGTCTATCCTTCTAGTAGCCTTGCCAGTTTGCCTTGTAATCAACGAAATACCTCTGATGGCCATTTGGTTTCTACTGACATCAACTTTCAGcaTGCTCCCTCTTCTGCTGAAGGACGGTTTGCTGTTGCCTTACGCGGTGACCTCATTGGCGTTCCTCTTTCTGAGTTTGTATCTGCTCTCCGCTTTAGAGAGAAGTACAGAAGAAGAGCTCAGACTGGGTCTCTATCGCAAACTCGCTCGGCGTTGGCTGCCTAAACTCAACCTCAGCCGGATCATTAAGTGGAAATTCTGGCTTTCCCTGGTGGCCATGGCAGCGTTGAGCTTTACGAGCGTGTGGTTGAAGCCTCCGGCCAAGTTGCCCGATCTGTTTCCGGTGCTGGTCTCCATCCTTTCCTTTCTACACTTTCTGGGCTTCATCATATATTTCAACCTGGTCCAGTTGATGGAGCCACAGaggaaaaagagtcagaagaAAACTAATTGAAATGTGTCTTCAAAGACGTTGGTTGTCAAAAAGAAAGAGCTACAGCCAGGATGACGGTGTAAGGAAAGGACAATCCTTTAGGGCAGAATAGAACAGGATGGGAATAGTTTGTGAAAATTCAATTTCCTCTTAATGAGGTTTAGGGATCTTGCTTGAGTTGAGAAGAGTGAATTCAATGAAGGAGATACAGTTTTGCCAGACTTTCTCTCACTTGTTTGCCTTGGAGACAAATTCGGTTAGTGGGATATTATTGTGTAAATGACCAAACCAGTAAGgccattatttttacatttttgatacaCCATTAAATGGTTTTGCACAAAATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251130.1 lncRNA downstream 133645 14651716 ~ 14656031 (-) False LOC122346442
XR_006251129.1 lncRNA downstream 133645 14651716 ~ 14656031 (-) True LOC122346442
TU67022 lncRNA downstream 295654 14493121 ~ 14494022 (-) True G45277
TU67012 lncRNA downstream 510650 14263867 ~ 14279026 (-) False LOC122346673
TU67118 lncRNA upstream 103679 14905502 ~ 14905708 (-) True G45355
TU67394 lncRNA upstream 300867 15102690 ~ 15154616 (-) True G45532
TU67412 lncRNA upstream 383329 15185152 ~ 15239640 (-) False G45543
TU67413 lncRNA upstream 383329 15185152 ~ 15213632 (-) True G45543
TU67416 lncRNA upstream 383329 15185152 ~ 15221025 (-) False G45543
XM_043242114.1 mRNA downstream 8947 14770982 ~ 14780729 (-) True efcab7
XM_043242115.1 mRNA downstream 19779 14762711 ~ 14769897 (-) True pgm1
XM_043242953.1 mRNA downstream 31724 14657884 ~ 14757952 (-) True ror1
XM_043242954.1 mRNA downstream 97445 14657884 ~ 14692231 (-) False ror1
XM_043242887.1 mRNA downstream 146688 14587270 ~ 14642988 (-) True cachd1
XM_043242976.1 mRNA upstream 3481 14805304 ~ 14812624 (-) True foxd3
XM_043242692.1 mRNA upstream 105544 14907367 ~ 14914995 (-) True atg4c
XM_043241194.1 mRNA upstream 122316 14924139 ~ 14929125 (-) True angptl3
XM_043241192.1 mRNA upstream 155206 14957029 ~ 14962572 (-) False usp1
XM_043241191.1 mRNA upstream 155206 14957029 ~ 14962572 (-) True usp1
TU66983 other downstream 596510 14160475 ~ 14193166 (-) True G45257
TU66636 other downstream 1108402 13668528 ~ 13681274 (-) False tmem131
unassigned_transcript_1263 other downstream 1321737 13467868 ~ 13467939 (-) True trnaa-cgc_55
unassigned_transcript_1262 other downstream 1322111 13467494 ~ 13467565 (-) True trnaa-ugc_115
unassigned_transcript_1261 other downstream 1322450 13467155 ~ 13467226 (-) True trnaa-ugc_114
TU67455 other upstream 527144 15328967 ~ 15330817 (-) False LOC122347580
TU67521 other upstream 802087 15603910 ~ 15605470 (-) True G45606
TU67688 other upstream 1257145 16058968 ~ 16059767 (-) True G45730
TU67689 other upstream 1258070 16059893 ~ 16060466 (-) True G45731
TU67772 other upstream 1559377 16361200 ~ 16364020 (-) False fam183a

Expression Profile