RNA id: XM_043242754.1


Basic Information

Item Value
RNA id XM_043242754.1
length 1898
RNA type mRNA
GC content 0.50
exon number 11
gene id stk25a
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 12055892 ~ 12062418 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCGATTCCTCTCTCAGAGTAGCGGGGTTTCGGATAGAGGGAGTATTCTGTGCAGAGCATAAACCGTAAACATCCTTTCAAAAGACGACTGTCAGCCCTGACGTATGGACAGGACTACACATTAAAATCCCCGTGAACCGTGGAGCTGGTCAGCCCGGTCCAGTGGAATGATTTAGAAAGGCGTGGATTGGGAACAAGCTGTTCCTTTTGTGGGTGACTTCcaagaaggagagaaagaggaaaaatcTGAGGAGAACCCCCGAACTGGAGGTGGATTGAGCTGGACATGGCACACCTTCAGAACATTCGGAACCAGAATTCGCGTTTGAATCCTGAGGAATACTTCACTAAGTTGGAACGGATTGGTAAGGGCTCTTTCGGAGAGGTGTATAAGGGCATTAACAACCGCACAAAAGAGGTGGTGGCCATTAAGATTATTGACTTGGAGGAAGCAGAGGATGAGATTGAAGACATCCAGCAGGAGATCACGGTCCTCAGCCAGTGTGACAGCCCTTATGTTACCAAATACTACGGCTCCTACCTAACGGGCGCTAAGCTATGGATAATCATGGAATATTTGGGCGGTGGATCGGCTCTGGACCTGCTAAGGCCGGGACCTCTGGAAGAAGCTTACATCGCCACCATTCTCAGAGAAATACTGAAAGGACTCGACTACCTCCACTTAGAGCGGAAGATTCATAGAGATATCAAAGcgGCCAACGTGTTGCTCTCTGAACACGGAGAAGTCAAGCTGGCCGACTTTGGAGTGGCCGGTCAGCTAACAGACACGCAAATTAAGAGAAACACTTTCGTAGGAACTCCGTTTTGGATGGCGCCGGAGGTCATCAAACAGTCTGCGTATGACTTCAAGGCTGACATCTGGTCGTTGGGCATCACAGCCATCGAGCTGGCTAAAGGAGAGCCACCCAACTCAGAACTTCACCCCATGAGAGTCCTGTTCCTCATCCCTAAAAATAACCCTCCCACGCTGGAAGGGTCCCACAGCAAAGCCTTTAAGGACTTCGTCGAGGCTTGTCTCAATAAAGACCCGCGATTCAGACCGACAGCCAAAGAGCTTCTGAAACACAAGTTCATCACCCGCTACACCAAGAAAACCTCGTACCTGGCAGAGCTCATCGATCGGTACCGCCGCTGGAAGACGGAGGGCCACGGGGACGAATCCAGCTCCGACGACTCTGACATGGACGGGGAAGGCGATGACGGGGACCAGGGTCCCATGTGGACTTTCCCCACCGTGCGGCCCACTTCCATCAACAAGTTACAGAGGGGTTTCAATCACGTAGACAATAAGACATCAGACGTCATGAAAAGGCAGCCCAAGTCGCCGTCTCTAAAAACGTTCATCACGCCCATATTCAGAGAGCTGAAGGAGAAGCGGCGTGTCAGCGGGAACGGTGTGTGTGCCCTGGACGAGCTGGAGAACGCTTTCAGCCTGGCAGAGGAGTCCAGCCCTGGGATCTCTGACCGTCTACTCAATAACATTATGGAGAGAGTGTGCAGTTTTTCAGGTCATGCTGATTCAATGCTATAAGATATTGCATGCGGTACTGAATCTTCCGCAGGAGTGAACTCTGAGAGTTCCTGTGTCTCAACCCTGCAGGTTTACACTCAACGGAAACAGCATGCCTTCAAAACGATGAGGTCCGGTCTGACCGATGGAAAGAGCATCCTGATCTCTTCATGAGCCGGTGGTCTTCTATGCCCACCGACAGTCACTTCAGTCCAGCTTGCATCATGAGACGTTTTTACGGTTTACTTTGTAGAATATTGAAATgtctaaatgaaatgtaaaatatgaattgaCGAAGCAGGTTTGCGTATtccattaaattgcattaagtACATTGACATGTAAATAAACTAGtgtaaaaagtgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65869 lncRNA downstream 627129 11428125 ~ 11428763 (-) True G44501
TU65799 lncRNA downstream 813386 11242277 ~ 11242506 (-) True G44460
TU65798 lncRNA downstream 813860 11241637 ~ 11242032 (-) True G44459
TU65796 lncRNA downstream 816428 11239119 ~ 11239464 (-) True G44457
TU65791 lncRNA downstream 817694 11237962 ~ 11238198 (-) True G44452
TU66210 lncRNA upstream 87416 12149834 ~ 12437749 (-) False G44705
TU66214 lncRNA upstream 87416 12149834 ~ 12198838 (-) False G44705
TU66215 lncRNA upstream 87416 12149834 ~ 12437749 (-) True G44705
TU66216 lncRNA upstream 87416 12149834 ~ 12437749 (-) False G44705
TU66217 lncRNA upstream 87416 12149834 ~ 12217207 (-) False G44705
XM_043241418.1 mRNA downstream 57397 11973465 ~ 11998495 (-) True hdlbpa
XM_043241419.1 mRNA downstream 57982 11973465 ~ 11997910 (-) False hdlbpa
XM_043241126.1 mRNA downstream 204661 11850258 ~ 11851231 (-) True sox14
XM_043242737.1 mRNA downstream 269730 11734816 ~ 11786162 (-) True hs2st1b
XM_043242735.1 mRNA downstream 347412 11695648 ~ 11708480 (-) False lmo4b
XM_043241357.1 mRNA upstream 19559 12081977 ~ 12083540 (-) True dtymk
XM_043241354.1 mRNA upstream 21863 12084281 ~ 12087593 (-) True agxta
XM_043241350.1 mRNA upstream 25806 12088224 ~ 12094740 (-) True zgc:103559
XM_043241195.1 mRNA upstream 200501 12262919 ~ 12264713 (-) True LOC122346505
XM_043243024.1 mRNA upstream 568394 12630812 ~ 12699547 (-) False LOC122347614
unassigned_transcript_1088 other downstream 83112 11972709 ~ 11972780 (-) True trnap-ugg_4
unassigned_transcript_1087 other downstream 83341 11972480 ~ 11972551 (-) True trnag-ucc_1
XR_006251151.1 other downstream 986434 11055035 ~ 11069458 (-) False brdt
XR_006251152.1 other downstream 986435 11055035 ~ 11069457 (-) False brdt
TU65678 other downstream 1339151 10710045 ~ 10716741 (-) True G44358
unassigned_transcript_1090 other upstream 908665 12971083 ~ 12971154 (-) True trnap-ugg_5
unassigned_transcript_1091 other upstream 909060 12971478 ~ 12971549 (-) True trnap-cgg_1
unassigned_transcript_1092 other upstream 1358229 13420647 ~ 13420718 (-) True trnaa-cgc
unassigned_transcript_1093 other upstream 1358411 13420829 ~ 13420900 (-) True trnaa-cgc_1
unassigned_transcript_1094 other upstream 1358902 13421320 ~ 13421391 (-) True trnaa-ugc_1

Expression Profile