RNA id: XM_043242777.1


Basic Information

Item Value
RNA id XM_043242777.1
length 2121
RNA type mRNA
GC content 0.50
exon number 7
gene id gfi1ab
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13489950 ~ 13495596 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATAACGTTCAGGAAGCTTTTTGTCTCTTACGCGTAAAACCCATGAGATGAGATGGGCTGCGCGCTCTTCTCCTCGAACTAAACCCCGAGCGTCCTGCCTTCATCTCACAGCGAGCCCTGCGATCAGAGATAAAAAAGCCGCCGCATCCGTGGATCTGACAGATTGCTTGATCTTCACTAATGACTCAGGACACAACAGGAAGGAACCAGAGGAGACACAATGCCTAGGTCTTTCTTGGTGAAGAGCAAAAAAGCGCACAGCTACCACCAGCCCCGATCTTTGGAGGATGACTACAGCAGGCTTGATACTATTTTAGCTCACATATGTGCAGAAAGCAAAACTTCAGAGGAGTCGGATGCCCTGCCGGGAGACACTGCTGGCGCTTGTTCGCCGGACTCTCAGCTGGTGGATCAAGCTGATCTTTCTTCCAAGTCTCCTCTCAGCTGCGGGGGAAGCGTGTGCGACCGCTCCTCGGATTACGAAGACTTCTGGCGACCTCCATCACCATCAGCATCACCTGagtcAGAAAAGTCCTTTTCGCCCTCCGCTGAGGAAACGCAGCCATTCGCCGTCCCCTTCAGGCCTTACGCGTGGAGCAGGTACTCTGGATGTGAAATCAGGCAGCTGGTACAGCATACTCTCAACCATCACCACTCTCTGGACCTCGAGCGACCCGCTCCTCCGGCCTACTACAATGACCGCGTGGTCGAGTCCTCGCTCTTCACCGAAAGGGGGTCCGGCGCGAGCATCTACAACAGTTACAGTCCCACCGCCACCCTGTTCGAGCGCGCCACCGCCTCTGCGCTTTACGATGACAGCAACATCCTGGGAAAAGGACCCGAGATGAAAGCCGGCTCCGACGCGATGTGTAGCCGCCTCCTGTTGAACGGCGCGTACAAATGCATCAAATGCAGCAAGGTGTTTTCTACTCCGCACGGCCTGGAAGTGCACGTCCGGAGGTCGCACAGCGGAACGAGGCCCTTCGCTTGCGACATCTGCGGGAAAACGTTTGGACACGCGGTCAGTCTGGAACAACACAGAGCCGTGCACTCACAAGAGAGAAGCTTCGATTGTAAAATCTGCgggaaaagttttaaaaggtCGTCCACTCTGTCCACGCACCTCCTCATACACTCCGACACGCGGCCCTATCCGTGCCAGTACTGCGGGAAGAGGTTTCACCAGAAGTCAgacatgaagaaacacacgTTCATCCACACAGGGGAGAAGCCACACAAATGCCAGGTGTGTGGGAAAGCTTTCAGTCAGAGCTCCAATCTGATAACGCACAGCCGAAAACACACCGGATTCAAGCCGTTTGGATGTGACCTCTGCGGCAAAGGGTTCCAGCGCAAGGTCGATTTGAGAAGACACAAGGAAACACAGCACGGGCTGAAGTGAGGGGACGCTTCGGGACTTTACCAAACACTATCgggacttttttattttattttttttttaatttaacgaGCCGCAGATGCTCATTCATGAAacattaaatcagtgttttagaGTAGGCGACTAATAGCGTTTACATTAGCCGTAGAGCTGTTTATGCTCGGTGAGGTTTGCCTACGAGTCAGCGGCAGGCCAGCAGGTCTGGCAGCTTTCGAGGCGATGCTGTGCGGGGCATCACAGGGTATCTCCATCCAGATCAATAGCCCGCTGCAGAGACATGCCGGGCACCGTGTCTGAACCCAAAATATTATCACCAAAATAATCAGGGACGAAATATAACCGCCGCGAGAAAGGACACTGTATCACCCAAAATATCAGCTGAAGGAGAGAAAAATCACCGCATCTCAAAAGAATGCCACTTTGTTTTTCGAGGCTGCGGAGGGAATGCTGGCAAAACAAGCACTACAATAGACTGCGAGATTTCATCAATAAAAGGATTGTTTGTGTACTATAGCCTAAACTTATATGATCTGGCAACCTGTCGAAGTCTTTCcgttcatctttttttttttttccttttcgttTTCTTTAGCTTAGCCcgaataaacaaatacaactcAATTGTCTATACCTTTTCGAATAAATTTAAtcgctaaattaaattaaattaaatctgttttatatcatttacacTATTTATTGGAATAAAGAATTTTAAGGAGA

Function

GO:

id name namespace
GO:0007422 peripheral nervous system development biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09223 GFI1; growth factor independent 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66532 lncRNA downstream 132429 13356987 ~ 13357521 (-) True G44942
TU66531 lncRNA downstream 135167 13354307 ~ 13354783 (-) True G44941
TU66530 lncRNA downstream 135770 13353915 ~ 13354180 (-) True G44940
TU66529 lncRNA downstream 136300 13353364 ~ 13353650 (-) True G44939
TU66528 lncRNA downstream 136881 13352462 ~ 13353069 (-) True G44938
TU66619 lncRNA upstream 41348 13536944 ~ 13611593 (-) True G45014
TU66648 lncRNA upstream 197742 13693338 ~ 13694164 (-) True G45036
TU66652 lncRNA upstream 201903 13697499 ~ 13697711 (-) True G45039
TU66661 lncRNA upstream 222606 13718202 ~ 13722531 (-) False pex5la
XR_006251212.1 lncRNA upstream 328076 13823672 ~ 13835591 (-) False LOC122347350
XM_043242546.1 mRNA downstream 11039 13471896 ~ 13478911 (-) True glmnb
XM_043242215.1 mRNA downstream 73463 13407566 ~ 13416487 (-) True tomm70a
XM_043241138.1 mRNA downstream 84054 13390703 ~ 13405896 (-) False tbc1d23
XM_043242771.1 mRNA upstream 539 13496135 ~ 13535440 (-) False evi5b
XM_043242768.1 mRNA upstream 539 13496135 ~ 13535440 (-) False evi5b
XM_043242769.1 mRNA upstream 539 13496135 ~ 13534741 (-) True evi5b
XM_043242770.1 mRNA upstream 539 13496135 ~ 13525992 (-) False evi5b
XM_043242773.1 mRNA upstream 539 13496135 ~ 13519988 (-) False evi5b
unassigned_transcript_1263 other downstream 22011 13467868 ~ 13467939 (-) True trnaa-cgc_55
unassigned_transcript_1262 other downstream 22385 13467494 ~ 13467565 (-) True trnaa-ugc_115
unassigned_transcript_1261 other downstream 22724 13467155 ~ 13467226 (-) True trnaa-ugc_114
unassigned_transcript_1260 other downstream 22893 13466986 ~ 13467057 (-) True trnaa-cgc_54
unassigned_transcript_1259 other downstream 23085 13466794 ~ 13466865 (-) True trnaa-cgc_53
TU66636 other upstream 172932 13668528 ~ 13681274 (-) False tmem131
TU66983 other upstream 664879 14160475 ~ 14193166 (-) True G45257
TU67455 other upstream 1833371 15328967 ~ 15330817 (-) False LOC122347580
TU67521 other upstream 2108314 15603910 ~ 15605470 (-) True G45606
TU67688 other upstream 2563372 16058968 ~ 16059767 (-) True G45730

Expression Profile