RNA id: XM_043242778.1


Basic Information

Item Value
RNA id XM_043242778.1
length 1095
RNA type mRNA
GC content 0.51
exon number 8
gene id rpl5b
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13536511 ~ 13542567 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTGCTTTCCTCCACTCAGTGTTGTTTTGCCCCGTTATTTACCACGCATGCGCAcatcattctttctttttcccgTGCAGCGGAGTCAAAACTCCCAAGTTTGACTCCAGGCTCCGGCTTAGGAGACTGAAAAAGTCCGCAAAATGGGATTCGTTAAGGTAGTGAAGAACAAGGCCTACTTCAAGAGGTACCAGGTGAAGTTCAGGAGAAGGAGAGAGGGGAAAACTGATTACTTTGCCCGGAAGCGCCTTGTTATCCAAGACAAGAATAAGTACAACACACCCAAGTATAGGATGATCGTCCGCTTCTCCAACAGGGACATCATCTGCCAGATCGCCTATGCCAAGATCGAGGGTGACATGATTGTGTGTGCGGCCTACTCCCATGAGCTGCCCAAGTACGGCATCAGTGTGGGTTTGACAAATTATGCTGCAGCCTACTGCACCGGGCTGCTGCTGGCCCGCAGGCTGCTGAACAAATTTGGCCTTGACAAGGTGTATGAGGGTCAGGTGGAGATCACTGGGGATGAGTTTAATGTGGAGAGCATTGATGGACAGCCAGGAGCTTTCACCTGCTACCTGGATGCAGGCCTGGCCCGAACCACCACTGGAAACAAGGTGTTCGGTGCCCTGAAGGGAGCGGTGGATGGAGGTCTTTCCATTCCTCACAGCACCAAACGTTTCCCTGGCTATGACGCTGAGAGCAAGGAGTTCAATGCAGAGGTTCACCGCAAGCACATCCTGGGCCTGAACGTCTCTGAATACATGAGATACTTGAtggaagaggatgaggaagcCTACAAGAAACAGTTCTCTCGCTTCATCAAGAACAGCGTTACCCCTGATTCCATGgaggaaatgtataaaaaggCACACGCAGCCATCCGGGAGAACCCAGTGCATGAAAAGAAGCCCAAGCGGGAGGTCAAGAAGAAGAGATGGAACCGTGCCAAGCTCACACTGGCTCAGAGAAAAGACCGTGTTGCCCAGAAGAAGGCCAGCTTCCTTCGGGCTCAAGCTGCAGAGGAGGACTAGAGCTTGCTTTTCTCCTCATTTGTGCAGAGATCGTTTgttctaataaatatataaaaaaaga

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function
GO:0008097 5S rRNA binding molecular_function

KEGG:

id description
K02932 RP-L5e, RPL5; large subunit ribosomal protein L5e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66481 lncRNA upstream 118671 13417558 ~ 13417840 (+) True G44899
TU66480 lncRNA upstream 119539 13416759 ~ 13416972 (+) True G44898
TU66472 lncRNA upstream 136963 13399022 ~ 13399548 (+) True G44890
TU66463 lncRNA upstream 178523 13357403 ~ 13357988 (+) True G44886
TU66462 lncRNA upstream 179887 13356269 ~ 13356624 (+) True G44885
XR_006251135.1 lncRNA downstream 47318 13589885 ~ 13594537 (+) True LOC122346508
TU66580 lncRNA downstream 47419 13589986 ~ 13594601 (+) False LOC122346508
TU66598 lncRNA downstream 107548 13650115 ~ 13650883 (+) True G44997
XR_006251162.1 lncRNA downstream 113625 13656192 ~ 13657766 (+) True LOC122346715
TU66600 lncRNA downstream 119245 13661812 ~ 13662097 (+) True G44998
XM_043242547.1 mRNA upstream 64578 13469404 ~ 13471933 (+) True LOC122347353
XM_043242548.1 mRNA upstream 64578 13469404 ~ 13471933 (+) False LOC122347353
XM_043241151.1 mRNA upstream 145860 13367496 ~ 13390651 (+) False tp63
XM_043241156.1 mRNA upstream 145860 13367496 ~ 13390651 (+) False tp63
XM_043241152.1 mRNA upstream 145860 13367496 ~ 13390651 (+) False tp63
XM_043241553.1 mRNA downstream 55972 13598539 ~ 13607514 (+) True atp1b1a
XM_043241549.1 mRNA downstream 96427 13638994 ~ 13644273 (+) True zgc:172121
XM_043241551.1 mRNA downstream 96432 13638999 ~ 13644273 (+) False zgc:172121
XM_043241547.1 mRNA downstream 96439 13639006 ~ 13644273 (+) False zgc:172121
XM_043241550.1 mRNA downstream 96444 13639011 ~ 13644273 (+) False zgc:172121
TU66465 other upstream 126599 13394229 ~ 13409912 (+) True G44887
TU66125 other upstream 427145 13108735 ~ 13109366 (+) True G44645
TU66063 other upstream 454392 13080610 ~ 13082119 (+) False smx5
TU66085 other upstream 755591 12766183 ~ 12780920 (+) False crocc2
TU65993 other upstream 1444056 12087399 ~ 12092455 (+) False G44588
XR_006251224.1 other downstream 429606 13972173 ~ 13979005 (+) False meltf
unassigned_transcript_1264 other downstream 538366 14080933 ~ 14081004 (+) True trnag-ucc_2
TU67192 other downstream 1693644 15236211 ~ 15238200 (+) False pomgnt1
TU67233 other downstream 1816294 15358861 ~ 15459386 (+) True G45419
TU67277 other downstream 2022414 15564981 ~ 15566668 (+) True G45448

Expression Profile