RNA id: XM_043242781.1


Basic Information

Item Value
RNA id XM_043242781.1
length 2436
RNA type mRNA
GC content 0.41
exon number 4
gene id arl6ip6
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 5691481 ~ 5699650 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAAACCGCGATGTTTTGAAACAGTTCGTCGCTTGGCAACTTTCAAATTGCTATAGACTGTGTTCAGCTAAATCCGCTTTAAATCCGTTGTATCGCTCGTCTAACTGCATAAAACGTACACACCGCGCATTGCACAAGTCAAGTGCAATCAATCATTTGAAAAGCGACATTCACTAGCGCGCTAACTAACTAGCCAGTTGTCTAGGAAACGGAAACGCGCAAACTAAAAACGCAGGATGTGACTCACTAGCCAGCAATTTCAACTTTAGAAACTTATCTTGGCGACCATGCTGCGGTCTGCCAGAGATAACGACGGCCACCCTTTAGAAGTTTATTCTGATGATGAAGATAGCGCTGCATTAGCAGGAGGAAGAAACATGTCTGAGGAAATAAACGCAGCTTCGCGTGAGGGCAGCGAGATCAGCAGCTCGACGCCTGGGCGGCTACCCCTGCGCCAGCGGTACTGGAGAGACACGCACCTGTGGCCCGCTCGAGTAGTATCTGTTCTATGCAGCGTGGTCATTGTCTCATTTATCGCTGTGCTGATCTCCTTCTTGTACATCGTATTAAAAGATCTAAGAGCAGAGAGAATAACCACTGAAGATGGATCAGAAGTGAGACTCCTGGgtTTTTGGAGTATTTTGGTTCTGTCTTCTGTGGCTGGGGTTCTTTGTTGCAGCTTCTCCTGGACCCTCACATATTTCGACTCCTTTGAGCCTGGAATGTTTCCACCAACTCCTCTTTCTTCAGCCAAATTCAAAAGAATGACTGGACACTCTTTCCACATGGGCTACAGTATGGCTATACTCAACGGCATAGTAGCTGCGCTCACTCTTATATGGTATCTCACCTGACGTGCCTCATCTGTGGACACCTCGGCCGTCACCAAGAGGCAACTCCAAGTTTAAACTGTTCAAAATGACAATTTGCTGAAAATTgactcaccctcaggtcatccaagatgtagatgagtttggtTCTTCATCAGAACGGATTTGAAGAAActcgctcaccaatggatcctctgcttCGAATAAGTGcgttcatttctgggtgaattaAGGGCAGATGGAGCCGTCAAATTATGTTGCTAATATAACTAcagataaaacctttttttttttttttaaataagcacaaAAACTAACACAGAGAATGGAATActagttaaaaaatatttttagtctttCACACACTGAAGCAAAGCAATAAAgtacaatgttgttttttttttaaaggatttctcatattttcatatatgcTAATTTGACAAATTCAATACACAACGCACAATGACTTTTCGTAATGGACtacatttctggaaaaaaaaaaaacattagtgaTGTCAGGGTCTCTTTGTTACTCAGTTATTTTGTCTTATAAAAGGCTTTTTATTAGAGAATCCAGTGCAAGCAGCTTTTTACCATTACAATAGCAGTGCATTAAATCTGCTTTTTGCCCTTTTGATGTTATTCATCGTCAGTGTGGCAACACATAGATGCCGCTTAAAATCTattcaataaatgcaattaGCATTTTAGGAACTCCGCTTAGCAAAGACTACAGTCCCTTTGCAGTCTTGCTTTATTAAAGCTGGAAGCTGCTGCTCTATTGAGCGTTTTAATGGGGGAAATCATTAATACAATAGCTGTTTTGGGGTTGATGGAGAGTGACCGTGTTAAAGCTTTGTCGAGAGCCTGGGAGAAGGTCAGAGAGTGTAGAAGTGTGGATTTAATTTATGACTTTAATTATTTGATGCAGACTCCGCCAGGCcatgattactttttttttcccccttcttcATTAGATTAGCAGACCCTGTAGCGACTCGTTTCTGCTAGCGCTAATGCACTGGTCTgtttagtgtatatatagagTATTAATGCACTGCCGCTTCATGAGTGAGtgtgttctttttgtttctgtggCAACGGGCTCCTAtaatttgttttccttttacaGGACATATTCCCTCTCTGTTTTTAGTGGATGTTAATTCAGGTTTGTCGAGCATTTCCAGAAATTTTGCTCGGGTATTTTAAGGTGAAGGGGAGATTTTAGTGTGCCTCTTGTTGTCGGTTTTTTTGGTGTGTTCTCGCATGACTTGGTGACAAAGTGTCTCTCTTAATGATGTTTCTGTTGAGGCGAAGGCCTGTCTGAGGTAAACCTCGTCTCTCTCTCGCCTTGAATCGCGGAGCGCAACTGTCACAAACAATATATCGTCCTGAAAGCGCCTGATTTGAGTGGTTTGCTTACTTTTTTCCTGCCATTTAAATAATCAGGGGACGAAAGAAACAACACTGGAATATTCATCGCTTACACAGCAGGTGGGATATCGTGTCAAATAATGCTATCAGAAATGATTTTGTAAgtatgtatttatgcaaaaaggaataaatttgcaatatgaattaaaaaatcgtgttttaatatttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63733 lncRNA downstream 36523 5654221 ~ 5654958 (-) True G43019
XR_006251160.1 lncRNA downstream 452786 5236821 ~ 5238695 (-) True LOC122346705
XR_006251161.1 lncRNA downstream 499482 5188356 ~ 5191999 (-) True LOC122346706
TU63655 lncRNA downstream 501537 5185601 ~ 5189944 (-) False LOC122346706
TU63647 lncRNA downstream 519420 5171196 ~ 5172061 (-) True G42969
XR_006251149.1 lncRNA upstream 45789 5745439 ~ 5747394 (-) True LOC122346635
TU63805 lncRNA upstream 48116 5747766 ~ 5755464 (-) True LOC122346634
XR_006251148.1 lncRNA upstream 48227 5747877 ~ 5754995 (-) False LOC122346634
TU63938 lncRNA upstream 259143 5958793 ~ 5961685 (-) True desmb
TU63963 lncRNA upstream 296306 5995956 ~ 6483393 (-) True G43161
XM_043240976.1 mRNA downstream 11577 5669451 ~ 5679904 (-) True kcnj3b
XM_043241375.1 mRNA downstream 42915 5646330 ~ 5648566 (-) True eef1b2
XM_043242869.1 mRNA downstream 45538 5640280 ~ 5645943 (-) False zdbf2
XM_043242871.1 mRNA downstream 45598 5640280 ~ 5645883 (-) False zdbf2
XM_043242870.1 mRNA downstream 45667 5640280 ~ 5645814 (-) True zdbf2
XM_043241368.1 mRNA upstream 1372 5701022 ~ 5721647 (-) True fmnl2b
XM_043241369.1 mRNA upstream 23818 5723468 ~ 5736559 (-) True mylkb
XM_043241617.1 mRNA upstream 57352 5757002 ~ 5770326 (-) True LOC122346764
XM_043241618.1 mRNA upstream 132334 5831984 ~ 5837061 (-) True LOC122346765
XM_043240977.1 mRNA upstream 201488 5901138 ~ 5910744 (-) True chpfb
XR_006251179.1 other downstream 51556 5622686 ~ 5639925 (-) False adam23a
TU63628 other downstream 460771 5229456 ~ 5230710 (-) True G42958
unassigned_transcript_1085 other downstream 735863 4955546 ~ 4955618 (-) True trnak-uuu_105
TU63298 other downstream 866044 4818191 ~ 4825437 (-) False LOC122347558
TU63795 other upstream 31568 5731218 ~ 5736620 (-) False mylkb
TU64004 other upstream 573673 6273323 ~ 6301137 (-) True G43180
TU64005 other upstream 573673 6273323 ~ 6301137 (-) False G43180
TU64096 other upstream 1119709 6819359 ~ 6827728 (-) False G43248
TU64095 other upstream 1124590 6824240 ~ 6827728 (-) True G43248

Expression Profile