RNA id: XM_043242787.1


Basic Information

Item Value
RNA id XM_043242787.1
length 1234
RNA type mRNA
GC content 0.47
exon number 9
gene id akr1a1b
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 16277857 ~ 16280917 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTGACCTAGGAAAAATATTCCTTGTTATGATAATCCACACGGGACACTGGTTGTCCTGATTTTAAAGGGAGAATGCAGCACATTCAACGCGCTCTGCGTCTTGTCATTCATTCTCACAAGTTTTGCTGTCGAATGACACACAGGATGAGTATGAATGATTTTGCTGTTCTCAGCACTGGAAGAAAGATGCCCCTTGTGGGACTTGGGACGTGGAAGAGTGAACCCGGACAGGTAAAACAGGCAGTTATCTGGGCGCTGCAATCTGGCTATCGGCACATTGACTGTGCTCCCATTTATGGGAACGAGCCAGAGATCGGTGAAGCATTTCAGGAAATTATGGGACCTGAAAAAGGCGTAAGGCGAGAGGATGTATTTGTGACCTCCAAactgtggaacacaaaacacCACCCAGATGATGTGGAACCATCTCTCTTAAAGACTTTGAAAGATTTGAAGCTGGAGTACTTAGACCTTTACCTCATCCATTGGCCATATGCCTTCCAACGAGGCGATACCCCTTTCCCTAGGAAGGAGGACGGAACTTTGCTGTATGACAACATGGACTACAAGCTGACATGGGCTGCTATGGAAAAACTTGTGGGAAAGGGGCTTGTCAGGGCCATCGGGCTCTCGAACTTCAATAGCAGGCAGATCGATGACATCTTGTCAATTGCAAGCATCAAACCAACTGTTTTGCAGGTGGAGTCCCATCCATACCTTGCACAGGTTGAGCTGTTGGCTCACTGCCGGGATCGGGGTTTGGTAATGACCGCCTACAGTCCGCTGGGATCTCCTGACCGAGCCTGGAAGCATCCAGAGGAGCCTGTGCTCTTAGAAGAACCAGCCATTGCTGCACTAGCCAAGAAATACAACAAGAGTCCTGCACAAATTATCATCAGGTGGCAAACTCAAAGAGGAGTAGTGACTATCCCAAAGAGCATTACACAGTCTCGGATCAAAGAGAACATCCAGGTGTTTGATTTCACTCTTGAACCCGAGGAGATAAATCAAGTGACAGCATTGCACCGAGGCTGGCGTTACATTGTGCCATCCATTACTGTTGATGGTAAGTCTGTCCCCCGGGATGCAGGACATCCTCACTACCCTTTTAATGACCCCTATTAATACACACTTCTGCGTGATTCTGTGCCTTGGAACTAATTGAACCCACGGAGCCCGTTCATTACTCTGTATACTtctaacataataaaacatttttgttaaatattgaaa

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008106 alcohol dehydrogenase (NADP+) activity molecular_function

KEGG:

id description
K00002 AKR1A1, adh; alcohol dehydrogenase (NADP+)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67717 lncRNA downstream 6749 16270902 ~ 16271108 (-) True G45753
TU67716 lncRNA downstream 8465 16268915 ~ 16269392 (-) True G45752
TU67715 lncRNA downstream 10315 16267183 ~ 16267542 (-) True G45751
TU67664 lncRNA downstream 159271 15941258 ~ 16118586 (-) True G45709
TU67746 lncRNA upstream 39661 16320413 ~ 16322805 (-) True G45770
TU67946 lncRNA upstream 906704 17187456 ~ 17187794 (-) True G45897
TU67960 lncRNA upstream 962928 17243680 ~ 17246369 (-) False LOC122347244
TU67974 lncRNA upstream 1132286 17413038 ~ 17414139 (-) False brinp3a.2
TU67995 lncRNA upstream 1233886 17514638 ~ 17518605 (-) True G45930
XM_043242669.1 mRNA downstream 556 16272017 ~ 16277301 (-) False LOC122347419
XM_043242670.1 mRNA downstream 557 16272017 ~ 16277300 (-) False LOC122347419
XM_043242668.1 mRNA downstream 557 16272017 ~ 16277300 (-) True LOC122347419
XM_043241360.1 mRNA downstream 21777 16254641 ~ 16256080 (-) True tmem69
XM_043241361.1 mRNA downstream 24017 16152146 ~ 16253840 (-) True mast2
XM_043242791.1 mRNA upstream 637 16281389 ~ 16284146 (-) True prpf38a
XM_043242785.1 mRNA upstream 11443 16292195 ~ 16298925 (-) False mpl
XM_043242786.1 mRNA upstream 11443 16292195 ~ 16298869 (-) False mpl
XM_043242784.1 mRNA upstream 11443 16292195 ~ 16298869 (-) True mpl
XM_043242792.1 mRNA upstream 18827 16299579 ~ 16311653 (-) True tie1
TU67689 other downstream 217391 16059893 ~ 16060466 (-) True G45731
TU67688 other downstream 218090 16058968 ~ 16059767 (-) True G45730
TU67521 other downstream 672387 15603910 ~ 15605470 (-) True G45606
TU67455 other downstream 947040 15328967 ~ 15330817 (-) False LOC122347580
TU66983 other downstream 2084691 14160475 ~ 14193166 (-) True G45257
TU67772 other upstream 80448 16361200 ~ 16364020 (-) False fam183a
TU67937 other upstream 535888 16816640 ~ 16830208 (-) True rgs8
TU67944 other upstream 905937 17186689 ~ 17187318 (-) True G45895
TU67962 other upstream 1027063 17307815 ~ 17308478 (-) True G45910
XR_006251188.1 other upstream 1462963 17743715 ~ 17774107 (-) False opa1

Expression Profile