RNA id: XM_043242791.1


Basic Information

Item Value
RNA id XM_043242791.1
length 1282
RNA type mRNA
GC content 0.43
exon number 10
gene id prpf38a
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 16281389 ~ 16284146 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTTCCCCGGAAGACGTTCTTCGATATTTCTCCATGGCATATTAGCGTCCCGATTTTCCGTTCGTTCGTTTACAATTTTGAATCATGGCTAATAGGACGGTAAAAGATGCCAATAGCATACATGGAACAAACCCTCAGTATCTTGTCGAGAAGATTATACGAACACGTATTTATGAGTCCAAGTACTGGAAAGAGGAGTGTTTTGGACTTACAGCTGAACTCGTCGTGGACAAAGCGATGGAGCTGAAGTTTGTTGGTGGTGTATATGGAGGAAACATCAAGCCTACTCCATTCTTATGTCTGACCCTAAAGATGCTGCAGATCCAGCCCGAAAAGGACATTATTGTGGAATTCATCAAGAATGAAGACTTCAAGTACGTCCGTTTGCTTGGAGCTATGTATATGCGCCTGACCGGAACTTCTGTAGATTGCTACAAGTATTTAGAACCGTTATATAATGACTACAGAAAAATTAAAAGCCAGAACAGAAATGGAGAGTTTGAGTTGATGCATGTCGATGAGTTTATAGATGAGTTGCTTCAtgcagagagagtgtgtgacaTCATCCTCCCTAGACTTCAGAAGAGACAGGTCTTGGAGGAAGCTGAGCTGCTGGATGCTCGTATTAGTGCTCTGGAAGAAGATCTGGATGAAGTGGAAACCAgtgatgaggaggatgaggaagaagagAAGCCAGAGAGAGTGCAAACACCAGAGCCACACAGAAGAAGTTACAGAGATATGGACCGACCACGCAGGTCTCCTTCTCCTCGCTACAGACGCAGCCGCTCACCCAGGAGaCGAAGCAGGTCACCTAAAAGGCGAAGTCCATCACCCAGGCGGGATCGGGATCGGGATCGTCACCGCAGCAAAAGTCCCCGCAGACACCGCAGCAGATCCAGGGACAGAAGGCATCGCTCCAAATCTCCAGGTCACCACAGAAGTCACCGGCATCGCAGTCACTCCAAGTCCCCAGAAAGTCGGTCAAAGAAGAGTCACAAAAGAAGTCGAAGAGGAAATGAGTGATCTCGGTTTTctgtctgattatttttttttttttccccaacttgttttatagatattttttgcTCTGTAATGTATGGAGAAACACAGAAATATCTGTCACAAAAAGCTTGTTCTTATTCTGTGTAAATTGCTCAAGCCCAATTTAGTCCtcttaatttactttttaatgccGTTTTATACTTTTCattgaaatttacattttttttccatcctgAATTAACTGtactgtgaaaaataaacatttgatggTCTTGTA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005681 spliceosomal complex cellular_component

KEGG:

id description
K12849 PRPF38A; pre-mRNA-splicing factor 38A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67717 lncRNA downstream 10281 16270902 ~ 16271108 (-) True G45753
TU67716 lncRNA downstream 11997 16268915 ~ 16269392 (-) True G45752
TU67715 lncRNA downstream 13847 16267183 ~ 16267542 (-) True G45751
TU67664 lncRNA downstream 162803 15941258 ~ 16118586 (-) True G45709
TU67746 lncRNA upstream 36267 16320413 ~ 16322805 (-) True G45770
TU67946 lncRNA upstream 903310 17187456 ~ 17187794 (-) True G45897
TU67960 lncRNA upstream 959534 17243680 ~ 17246369 (-) False LOC122347244
TU67974 lncRNA upstream 1128892 17413038 ~ 17414139 (-) False brinp3a.2
TU67995 lncRNA upstream 1230492 17514638 ~ 17518605 (-) True G45930
XM_043242788.1 mRNA downstream 472 16277857 ~ 16280917 (-) False akr1a1b
XM_043242787.1 mRNA downstream 637 16277857 ~ 16280752 (-) True akr1a1b
XM_043242790.1 mRNA downstream 1020 16277857 ~ 16280369 (-) False akr1a1b
XM_043242669.1 mRNA downstream 4088 16272017 ~ 16277301 (-) False LOC122347419
XM_043242670.1 mRNA downstream 4089 16272017 ~ 16277300 (-) False LOC122347419
XM_043242785.1 mRNA upstream 8049 16292195 ~ 16298925 (-) False mpl
XM_043242786.1 mRNA upstream 8049 16292195 ~ 16298869 (-) False mpl
XM_043242784.1 mRNA upstream 8049 16292195 ~ 16298869 (-) True mpl
XM_043242792.1 mRNA upstream 15433 16299579 ~ 16311653 (-) True tie1
XM_043242684.1 mRNA upstream 56159 16340305 ~ 16350269 (-) False LOC122347428
TU67689 other downstream 220923 16059893 ~ 16060466 (-) True G45731
TU67688 other downstream 221622 16058968 ~ 16059767 (-) True G45730
TU67521 other downstream 675919 15603910 ~ 15605470 (-) True G45606
TU67455 other downstream 950572 15328967 ~ 15330817 (-) False LOC122347580
TU66983 other downstream 2088223 14160475 ~ 14193166 (-) True G45257
TU67772 other upstream 77054 16361200 ~ 16364020 (-) False fam183a
TU67937 other upstream 532494 16816640 ~ 16830208 (-) True rgs8
TU67944 other upstream 902543 17186689 ~ 17187318 (-) True G45895
TU67962 other upstream 1023669 17307815 ~ 17308478 (-) True G45910
XR_006251188.1 other upstream 1459569 17743715 ~ 17774107 (-) False opa1

Expression Profile