RNA id: XM_043242792.1


Basic Information

Item Value
RNA id XM_043242792.1
length 3930
RNA type mRNA
GC content 0.46
exon number 22
gene id tie1
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 16299579 ~ 16311653 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGAGTGTGGATCAAGCGGAGTTGGGTTTTCTGCGTGTCAACAGCACCGATTTCCACGCGCAGAGGGAATCAGTGCGCGTGCATTCCTTCACGGTGATTGTAGAAATGCGCAAAAACTCGCGGCGACGGCGGTCGAGCTGGAAAAGCCCACTGGAATGACAACTCCTGTGTTTGGATCATTTCTAACGGATTACCCGAAAGTGAACATAAGATAACAGCCATGCTGCATTTACTATGCCTCTTGTGCTTCGTGGGCATATCTGATGCAGTCACGGATCTCACAATGACCTCTAATGGTGCCACATCTGCTAGTCATTTCCGCCTCTCTTGTATTTCTGGAGAGCGTGATACAGACGGAATTCAGCTGAGCATCACGAAGGACAACAGCATTGTCCTTCGTGCAGATTCGCCACATTTTAATGTGGAGACGCCACAGACTAAAGAAGTGGTGGCTACTGGATTCACAGGCTTTGACCACAGTGGGATTTTCTACTGTCACTCAAAAAGAGGCTCTGACCAACCTGCCAACATTACACTCATTAACAACTTCAGCAAAGgtAAATTTAAACCAGTGAGAGTCACTATGACAGCCAGTAAAGGAGAAGAAGTGAAACTAATCATGGATGTAGTTGGGGCAGAAAGACGAGACATTCATTGGAAATTCAATGGTAACTACCACTACATGACTCCTATTGCTGATGTTCAAAACCACACAGTAGTTCTGGATCTGATGAAAGTTGATGAAAGCCATACAGGAATTTACAGTGTCAGCTATATTGGGGAAAGTGCTCTTTATAGTGCCTGGATCCGCCTCATCGTTCGTGAATGTCCAAAGAATATATGGGGCTCCGACTGTGACAAAGACTGTCCCGAATGCTTGAATGGAGGTGTGTGCCATGACAAAGATGGAGACTGCGTTTGCCCTCCGGGGTTTATGGGAATGCGCTGTGAGACAGCCTGTCGAGAAGGAATGTTTGGTAGGAACTGCCAGGAATCCTGTAAGTCTGAGAATGGATGCCAGGGTTTGAGTTTCTGTCTCACGGATCCTTACGGCTGTTCTTGTGCAAGCGGCTGGCATGGAGATCGCTGTCGTAAACccTGTCTTGAAGGAATGTACGGCGCTGACTGTCTTTTAAGTtgcaactgcaaaaacaaaggcaaatGCAATCGATTCAGTGGCTGCCAATGTCCTACAGGCTGGAGAGGGCAATACTGTGAGAAATCAGATCGTGCACCAGAGATTTTGGACATGCCCAGTAACCTGGAGGGAAACTTGAACTCCAGCCACAAGATCACATGTTCTGCAACAGGCCATCCTCTGCCTAGCCATATGAGTATTGAGCTACGCAAACTGGAAAGCACCATTTTTAAGGCATCCCACACTACCACGGACTCCAAAAAAAGCACAGCTCACTTTGAGATCCCAAGGCTGTCTGCAGAGCACAATGGTTTGTGGGAATGTCGAGTCTCCACCAATGGTGGGCAGGATTCCTTCAAGTTTATCCTAACAGTGAAAGATCCACCCTACCCAGCCACTGCTCCTAAACTAATATCGAGGAGTAGCAAACAACTAGTTGTAAAGCCTGTGGACACTTATATGGGTGACGGTCCCATTGTTTCAACTAAGCTACTTTACAAGCCAGTGAATACAGAAGACTCCTGGTCCTCCATTATAGtgtatgGCAGCGATCAAATTACATTACCGAATTTGAAGCCTTCAACCAGATACCATGTCCGTGTACAACTCACTCGCCCAGGGGACGGAGGAGAAGGTCCTTTGGGTCCAAAGGCAATCATGGAGACTGACTGCCCAGGTCCTTCTTCTCCAAGGAACGTCCAGGCACATGCTCTGTCCATCAGTGCAGTTAGGCTTCAATGGCAACCGCCTGAGGACCCCAATGGAGGCATTGTAAAGTACAGCATTGAATACCAGCCAGTGGGCCAGAGCAGCTTTCACCCTTGGGTGGACACAGATGATGGCAACAAAACCACAAAAGATGTGACATCCCTTAATGTGAGCACATCATACCTGTTCAGAGTGAGGGCTTTCTCCAAGGTGCCAGGAGAGTGGAGCAAGTTTGTAGAAGCCAGGACACGTGGAGACGGATTCTCCAACTATATTCCCACCACCCAGCAAGTTGGAAGGCCAATAGCTGAGGATCATCAGCTTCTTTGGGCTGTGGTTGGGTCAGTGGCTGTAACCTGTGTGACCATTCTTCTGGCCCTTTTGATTCTCTTCTACATTCGTAAATCTGTCCTTAAACGAAAGCGGACATTCACCTATCAGTCTGGATCGGTGAGtagacactttattttgTCTCACAACTCAGGGACTCTCACACTGACCCGGCGACCAAAACCTTCCCCAGAGCCCCTCACCTATCCCATACTGGAGTGGGAGGACATTAAGTTTGAGGATGTCATTGGAGAAGGAAACTTTGGTCAGGTCATCAAGGCCATGGTCAAAAAAGATGGCATAAAAATGAGTGCTGCGATTAAAATGCTTAAGGAGTTCGCCTCAGAGAATGACCATCGAGACTTTGCAGGCGAATTAGAAGTGCTGTGTAAATTGGGCCAGCATCCGAACATAATTAATCTAATCGGTGCCTGTGAAAACAGAGGTTACCTTTACATTGCCATTGAATATGCACCTTACGGAAACCTTTTGGACTTCCTAAGAAAGAGCCGTGTCCTAGAGACTGATCCTGCTTTTGCTAAAGAGCACGGAACGGCCTCCACACTCACCTCCCAGCAGCTCTTGCAGTTTGCTGCTGATGTAGCAACTGGCATGCATTACCTTAGTGACAAACAGTTCATCCACAGAGATTTGGCAGCCAGAAATGTACTCGTGGGAGACAACCTAGCTGCTAAAATTGCAGATTTTGGCCTCTCACGTGGGGAGGAGGTGTACGTGAAAAAGACCATGGGAAGACTGCCTGTGCGATGGATGGCCATAGAGTCACTAAACTACAGTGTCTACACCACTAAGAGTGATGTgtgGTCTTTTGGAGTTCTTCTGTGGGAAATTGTAAGTTTAGGTGGGACTCCATACTGTGGGATGACCTGTGCTGAGCTCTATGAGAAGCTTCCTCAGGGCTATAGAATGGAGCAGCCCAGGAACTGTGACGATGAAGTGTATGAACTTATGAGGCAGTGCTGGCGAGATAGACCCTATGAGCGACCGCCATTTTCACAAATATCCGTCCAGCTCAATAGGATGCAAGAGGCACGGAAGGCCTATGTCAACATGGCTCTGTTTGAGAACTTCACTTATGCTGGAATAGATGCTACAGCTGAAGAGGCCTGACTACCAGCCCCCCCAGACCCAAGAAGGCTTCATAACCCAAGGGAGGCTCATCACAGTAAAGCTTTACGCTACTGTCACTCCCCTGTGGTCAGGTTCCATTGTTCAAAGAAACACTCCACCAAAACCACATGGCTATAGAGTACAGACTGTGAAAGGACACTCTTATGAGCTGTTATGACTCTCGATTCTAGAAGGATTCATATCTCAGGATGTTGGATTACTCAAGAGGAAATGGAACCTACAATATAAGCTACAGATGTGTAGCACACTGGGTCTGTGGGGAGCTGGACAATGCACTGAACTTCTTTTCCATCTTTTATTGGGAGAATCTTTGTGTGAGGTTGTTAAAACTTGCATTCATCAAAtgaaaaatggaagaaaaaaaactgccagTATTATTCAATGTAGCACTTGAAAAAAGCGATGTATCGTTCTCATTGAAACTCATTTGTTTGGCTTGAGTGAGTTCTGTACataatgttaatgttgtttATCTGACCGTAAAAAGCCACTAagatcttgttttttgttttttacatatatgtCATGTTATAGCCGTCCTGTAATCATTATAAGTATGTTAAGAAGAACGTCTTTacttaaataaaacatctaagTGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67717 lncRNA downstream 28471 16270902 ~ 16271108 (-) True G45753
TU67716 lncRNA downstream 30187 16268915 ~ 16269392 (-) True G45752
TU67715 lncRNA downstream 32037 16267183 ~ 16267542 (-) True G45751
TU67664 lncRNA downstream 180993 15941258 ~ 16118586 (-) True G45709
TU67746 lncRNA upstream 8760 16320413 ~ 16322805 (-) True G45770
TU67946 lncRNA upstream 875803 17187456 ~ 17187794 (-) True G45897
TU67960 lncRNA upstream 932027 17243680 ~ 17246369 (-) False LOC122347244
TU67974 lncRNA upstream 1101385 17413038 ~ 17414139 (-) False brinp3a.2
TU67995 lncRNA upstream 1202985 17514638 ~ 17518605 (-) True G45930
XM_043242785.1 mRNA downstream 654 16292195 ~ 16298925 (-) False mpl
XM_043242786.1 mRNA downstream 710 16292195 ~ 16298869 (-) False mpl
XM_043242784.1 mRNA downstream 710 16292195 ~ 16298869 (-) True mpl
XM_043242791.1 mRNA downstream 15433 16281389 ~ 16284146 (-) True prpf38a
XM_043242788.1 mRNA downstream 18662 16277857 ~ 16280917 (-) False akr1a1b
XM_043242684.1 mRNA upstream 28652 16340305 ~ 16350269 (-) False LOC122347428
XM_043242685.1 mRNA upstream 28652 16340305 ~ 16350028 (-) False LOC122347428
XM_043242683.1 mRNA upstream 28652 16340305 ~ 16350025 (-) True LOC122347428
XM_043242527.1 mRNA upstream 49514 16361167 ~ 16364019 (-) True fam183a
XM_043242526.1 mRNA upstream 49515 16361168 ~ 16364019 (-) False fam183a
TU67689 other downstream 239113 16059893 ~ 16060466 (-) True G45731
TU67688 other downstream 239812 16058968 ~ 16059767 (-) True G45730
TU67521 other downstream 694109 15603910 ~ 15605470 (-) True G45606
TU67455 other downstream 968762 15328967 ~ 15330817 (-) False LOC122347580
TU66983 other downstream 2106413 14160475 ~ 14193166 (-) True G45257
TU67772 other upstream 49547 16361200 ~ 16364020 (-) False fam183a
TU67937 other upstream 504987 16816640 ~ 16830208 (-) True rgs8
TU67944 other upstream 875036 17186689 ~ 17187318 (-) True G45895
TU67962 other upstream 996162 17307815 ~ 17308478 (-) True G45910
XR_006251188.1 other upstream 1432062 17743715 ~ 17774107 (-) False opa1

Expression Profile