RNA id: XM_043242805.1


Basic Information

Item Value
RNA id XM_043242805.1
length 5073
RNA type mRNA
GC content 0.46
exon number 25
gene id dlg1a
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13867877 ~ 13971903 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAAAGTTTGGGAATTTCGGGAACACTAGAAGAAAGAGGAAGTGTTGCGCCGAAGAAGTTTCGAGTACGGACGCGTGCGGATCTAAGACTCCGGTCCGGAGGGAACGGGAGACATGTGTGAACGGGAACTTCACGCGCGCTTCGGCAGGGATTATTAGCATTTCTGCCCTTTTCTATTACTTCCATTGCAGCAGATCGGAAGCAGTTTCCCCCCCCCGAATGTTTGTAATGCACTTTTCGATTCGCTGATACTCCGTGCACCCGTCTGAGAAAAGTTCAGCAAAGTTGGGAGTTGCATGAAAAGTGTCGTGCCGCATCTGACCGGGTTATGAGCGAAGCGGTCGCTTACGCTTTTTATCGCATCGGAGGACTATCGATATTGAGCTTTCACATGTCAGCCTGACCCGGTCGGCGATCGCCGCTCATCTACGAAATCAAAGCGAAGCGACTGAAAGTGAAAGCGATCGGTCATTCATTCCAATGCTTTTCAGCGGTCGCCCTTCAGCAGTTGTGAGACTTTGAATCTTTTGAGTCTTGATCATGCCGGTGAGAAAGAAAGATGCTCAGAGAGCCCTGCTGCTTCTGGACGAGTACCGAACTAAACTCAGTCAGACCGGAGACCCTCATCTCAGGCATTCGATCGAGAGAGTCATCAGTATTTTTCAGAGTCAGCTCTTCCAGGCTCTTATAGATATTCAGGAATATTACGAAGTGAGCCTCCAGGATAATGAGAGTAAGCCCACAGAGCCGTCAAGCCTTAAAACCAGAGAACCTTTTCCTCCCGTGAATGAGTGGAATCTCACTGGTCCTCCCAGTAGCACTGGACCAGCAGAAACCGTGCCCAGCGTCGATGCCCAAAGCAAAGAGAAATATAGATATCAGGATGAGGACACCACGTCGCCTCCAGAACACAGCTCTCCACACCTACCAGGGGATGTGCGTCCTCCTGAGCTGGTGCAGGTGTCGGAGAAGAACATCTCCCAGATCGAGAATGTACATGGCTATGTTTCCCATTCACACATCTCTCCTATGAAGCAGGCAGATGTCATTCCTCCCTCCGCTCCCATAATCCCTGTGATCCCTATCTCACCCGTCCCAGCCGAGACCACTGCCATTCCTGCACCCACGTCacagGCAAGCCCCGCACCGGTGGTGGTGAACACAGAAAGCCTTGACACCTCGCCCTATGTGAATGGAACAGAAGCTGATTATGAATATGAAGAAATTACACTTGAACGGGGGAACTCAGGCCTGGGTTTCAGTATTGCAGGCGGTACCGATAACCCCCACATCGGCGAGGACCCAAGTATCTTTATCACAAAGATCATCCCAGGAGGAGCTGCCGCACAGGATGGCAGACTCAGAGTTAATGACTGTATACTGCGGGTAAATGATGTAGACGTGAGAGACGTAACTCACAGCAATGCTGTGGAGGCACTCAAGGAGGCGGGCTGCATTGTCAGACTGTATGTCAGAAGAAGAAAAGCTGTCACAGAAAAAATCATGGATGTAAAGCTGGTAAAAGGTCCAAAAGGTCTAGGTTTCAGTATAGCCGGAGGAGTTGGAAACCAACATATTCCTGGGGACAACAGTATTTATATCACCAAAATCATTGAGGGAGGAGCGGCCCACAAAGATGGACGGCTACAGATTGGAGATAAACTCATGGCTGTGAATGCTGTTTGCCTTGAAGAGGTCACTCATGAAGATGCCGTGGCTGCCTTGAAAAACACCCCTGATGTCGTCTATTTAAAAGTGGCAAAACCCACTAGTGTCTTTATGAATGATAGTTACGTTCCTCCCGATGTCACCAGCTcctATTCCCAGCACATGGAGAACCATATCAGCACCCAAAGCTATCTGAGTCAGCCGTTAACCCCCGCCACCCCATCTCGGTACTCTCCTATCTCAAAAGGCATGCTGGGAGATGATGAGATCACAAGGGAGCCTAGGAAAATAGTCCTTCATCGGGGCACCACAGGCCTAGGCTTCAACATTGTAGGAGGAGAAGATGGAGAGGGAATCTTCATCTCATTCATTTTAGCAGGAGGGCCTGCAGACCTGTGTGGAGAATTAAGGAAAGGAGACCGTATCATCTCTGTAAATGGGGTGGACCTCCGCAGTGCAACGCACGAACAGGCAGCCGCAGCACTGAAGAATGCTGGACAGACTGTGACCATTGTGGCTCAGTACAGACCTGAAGAGTACAGTCGATTTGAAGCCAAAATCCATGATCTACGGGAGCAGATGATGAACAGCAGTATTAGTTCAGGCTCCGGCTCATTGCGGACTAGTCAGAAGAGGACCTTGTATGTCAGAGCCCTGTTTGATTATGACATAACGAAAGACTCGGGCCTGCCCAGTCAGGGGCTGAACTTCCACTTTGGCGACATCCTACATGTCCTGAATGCTTCGGACGAGGAGTGGTGGCAAGCGCGGCATGTGACTCCAGATGGCGAGATGGAGGAGATGGGCGTCATTCCCAGCAAGAAGAGggtggagagaaaagaaagagccAGGTTAAAGACGGTTAAATTCAACTCCAAGTCTCGAGACAAAGGGCAGTCACTCAATGACAAGCGTAAAAAGAACCTCTTTTCGCGAAAATTCACTTTCTACAAGAACAAGGACCCCAGCGAACAGGAAACGAGCGATGTGGACCAGCATGTAACGTCTAATGCCAGCGATAGTGAAAGTAGTTACCGTGGACAGGAAGAGTATGTCCTCTCGTATGAGACGGTCACGCAACAGGAAGTGAGTTATACTCGTCCGGTGATTATCCTTGGACCCATGAAAGACCGGATCAATGATGATTTAATCTCGGAGTTCCCGGACAAGTTTGGATCATGTGTTCCCCACACGACTAGACCAAAGCGAGACTATGAGGTCGATGGCAGAGACTACCATTTTGTTGTTTCACGGGAACAAATGGAAAAAGACATTCAAGACCACAAGTTCATCGAAGCAGGCCAATATAACAACCACCTCTACGGGACCAGCGTGCAGTCGGTGCGAGAGGTTGCAGAAAAGGGCAAGCACTGCATCCTGGATGTCTCGGGCAACGCCATCAAACGACTCCAGTTAGCCCAGCTCTACCCCATTGCGGTGTTCGTCAAACCCAAATCAGTGGAGAATATTTTAGAGATGAATAAAAGATTGATGGAGGAGCAAGGCAGGAAGACCTACGACAGAGCCATGAAACTGGAGCAGGAATTCCTAGAGCACTTCACCGCCATTGTTCAAGGGGACACATTAGAAGAGATCTACAACCAGGTTAAGCAGATCATCGAGGAGCAGTCTGGGCCGTTCATCTGGGTACCCGTCAAAGAGAAATTGTGAGATAGCTGGAGACAAATAAACCTTATTCttctttaaacctttttttttttgtatttttttttttctttccgttttcttttttatactaACCCGGCCTGCTGCTTGCGTTGGCTTTTTGACCCCTGAGCGTAGGAAATACATTCTCTTTGGATGGGTTTGGGGTCAGGGTGGTCTCAGGGCCacccctctctctgtctctctctctctctctctctctctctacaatgcctctctttgaaactgctgtCTAGAACTCGCATCCCAATCTCCGCGTTTCATCCTCCGATGGGAGGAGACATGCCTGACCAGCGACTTACTGGACAGATTATACGGTACAGATTCCTTAATGTTTAAGGGAGGTGACTTTCGCGAAGGAAAACCAATGagttaatgcattatatacattttggtTTGTTCTTTTTCCCATATATGATCAGAAGTTAACGCTTTCATGTCTGTCTCTGAAAAGACATAAAGCCACACTTTGCACGTTTTTTGCATTAAGAGCATGTTTTGAATGATTCTTTTTCGGTTAACATATGTTCTTACGTTTTTTGAGCTGCATGAACTGCAGCCACCATATTACTTCGGTTTTCTCTCATTTATCTTGTAAAATCAAGCAGCCCACTAATTTTAAGCAGCTGATCTGTTTTGTCACAAGTGCACAAAGAGGACAAAAACATTTGGCACAAGAGttcttctttttatattaaatgtctaTTTGTCTTAACGATCtgtgtacattttaatcaaGGTGCAACTGGGAGTAGCTTTTAGTTGAGGTGAAAAGGAACAGCTTACAATTATCTTTCAGATCCAGGTGATGACATATTCTTACTTAAAGAAACAGCAATGCAAATAAGAGAGTATAAATTGTAATGTATATTCAACCCTCAGTATACTGcctattttgttataataaagtCTATATTgagctttaattaaactccACACCTATgggaattattttctttataatgtcAAGCATACACTCGTATGAatatgcgtgtatgtatataaaaataaatataaatggatatataaatatatatatatattttcctttaCTTTTACCACCATCACTTTTGTCGTTAATGGTTTGTTTTATGCAAAAACACTAATTCACAGGACACATGGGCTGAATGGTGGTGTTCCATTTGCATCTGctcaaacaatataaaataaaactcaagTTGGCAGTTTGTagtcttcttctctctctctctctctctctctctctctctctctctctctctctctatgtagTTATgtcatatttactttttcatgTGACGTGCATGATTTCTAAAAGCAATAGTCTTTGACACATTAAACACGAGTGAGAAGCGGAGGAGAGAGGgcttctctttctgttttcacCTGGGATTGTGAAAATGTCAGAGTTAGCATGAACTGTAAACGTTAGAGGCTCGGAGATCCTTgcctccgtgtgtgtgtgtgtgtgtgtgtgaacttgtCGACTGCCCTTAGCTGAAGAGAGATTTGCTTTGCCGCTCTCTAACACAAGCCTTGAACTCTCCACCAGGGGGCGCGCTGACGGCGTTCCCTTCATTCTTAAGTTACTCGGAGATGATTGTTTTCTAAAAGATTGCTTCTTTAACGTGTCATTTTGGCTTTCTAACACATTTTTGACTAGATTATGTACATAATCTGCCAACTTGATTCATTCCATTTGTCAAAAGGAgaacagctaataaaaacttttttctcaTA

Function

GO:

id name namespace
GO:0007015 actin filament organization biological_process
GO:0030866 cortical actin cytoskeleton organization biological_process
GO:0045930 negative regulation of mitotic cell cycle biological_process
GO:0001935 endothelial cell proliferation biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016323 basolateral plasma membrane cellular_component
GO:0019901 protein kinase binding molecular_function
GO:0019902 phosphatase binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66694 lncRNA upstream 7268 13860255 ~ 13860609 (+) True G45070
TU66675 lncRNA upstream 31058 13836607 ~ 13836819 (+) True G45056
TU66600 lncRNA upstream 205780 13661812 ~ 13662097 (+) True G44998
XR_006251162.1 lncRNA upstream 210111 13656192 ~ 13657766 (+) True LOC122346715
TU66598 lncRNA upstream 216994 13650115 ~ 13650883 (+) True G44997
TU66717 lncRNA downstream 20842 13992745 ~ 13996966 (+) True G45075
TU66727 lncRNA downstream 44532 14016435 ~ 14128344 (+) True G45084
XR_006251242.1 lncRNA downstream 157444 14129347 ~ 14131078 (+) True LOC122347615
TU66741 lncRNA downstream 158585 14130488 ~ 14130998 (+) False LOC122347615
TU66775 lncRNA downstream 242308 14214211 ~ 14215282 (+) True G45112
XM_043242643.1 mRNA upstream 9977 13854242 ~ 13857900 (+) True ptmaa
XM_043242542.1 mRNA upstream 44085 13820119 ~ 13823792 (+) True phb2b
XM_043242544.1 mRNA upstream 47958 13813916 ~ 13819919 (+) True pde6d
XM_043241821.1 mRNA upstream 145443 13697792 ~ 13722434 (+) False usp13
XM_043242827.1 mRNA downstream 277 13972180 ~ 13980286 (+) True meltf
XM_043242268.1 mRNA downstream 9322 13981225 ~ 13985829 (+) True lrrc40
XM_043242259.1 mRNA downstream 107725 14079628 ~ 14116522 (+) True shroom2a
XM_043242260.1 mRNA downstream 107725 14079628 ~ 14116522 (+) False shroom2a
XM_043242261.1 mRNA downstream 107725 14079628 ~ 14116522 (+) False shroom2a
TU66465 other upstream 457965 13394229 ~ 13409912 (+) True G44887
TU66125 other upstream 758511 13108735 ~ 13109366 (+) True G44645
TU66063 other upstream 785758 13080610 ~ 13082119 (+) False smx5
TU66085 other upstream 1086957 12766183 ~ 12780920 (+) False crocc2
TU65993 other upstream 1775422 12087399 ~ 12092455 (+) False G44588
XR_006251224.1 other downstream 270 13972173 ~ 13979005 (+) False meltf
unassigned_transcript_1264 other downstream 109030 14080933 ~ 14081004 (+) True trnag-ucc_2
TU67192 other downstream 1264308 15236211 ~ 15238200 (+) False pomgnt1
TU67233 other downstream 1386958 15358861 ~ 15459386 (+) True G45419
TU67277 other downstream 1593078 15564981 ~ 15566668 (+) True G45448