RNA id: XR_006251224.1


Basic Information

Item Value
RNA id XR_006251224.1
length 2628
RNA type transcript
GC content 0.48
exon number 15
gene id meltf
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13972173 ~ 13980286 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGAACTATCGACACATTAAAGCAACGAAccggaagagctggagaaaaCACTGCCACCATAAAGTGTGCTGCGTTATTGTATAATTGTCGTCGTTAAATATGATTCCATCCTGTTGTAAAACAACATTAAGACACAGTCACAATTCCCTCCTGCCATAACACCTAGCACCTGAACAGATCTAACACTTTATGATGAAAACTTATTACTCTATTAAAACGAATACAATGACTTTTTAAGTCAGGCAAAGCCCTGAAACCGACAACTTGTGCGATGtgttaaaacattaaaccaCGTTTGACTGTCGTTCCCTCCTCCTTCGAGGGTAAAAAACGCCCCGTGTGTAAATGACACTGCCCTTGATTCAGAGCGTTTTTCATTCCCTTATGGAAAAGGTGGAGTTTGAAAGAATGAAAGACCCCTCTGTGTGCACCTTGGACCCCCGCCCGTCTGTTGGACGTGTCATTCCTCAGCTCTCACGTCTGCTCACGTTATAGCCTATAAATCTCGAATTTGACTGCGTGTGTCTTTTATGATCGAGGGACCATTTCCCGTCTTTTTACGTCTGACTGAGTCGTGTTTTGGACTTTGCAACAGTGTCTCAGATATAAAGCTACAGAAACGCGCGCTCTAGAGTCAGAGATGGACACCTGGGTTCTTCTAAGCGTTCTGCTCGCGCTCACGCATTACGCGTCAGGGCAGAGCACGATAAGATGGTGCACTATTTCTCCCGCGGAGGAGTCCAAATGCAAAGCAATGGTCCAGGCCTTCGCCGGCGCTGCAATTCGACCCGCGGTGCAGTGCGTGCTCGTCTCATCTAAAGCCGAGTGCGCTCAAAAACTAACCAAAAATGAAGTTGATGCCTTCTCAGCCAGTGCTAAAGAAATATATGACATTGGCAAGCAAGCCACCTTCAAAATTGCAGCTGGAGAATCTGGAGCAGATGCGAAAGGAATAACATACTACGGTGTTGCTGTGGTCAAAAAGACAAATTCAGCTATCAACATCAACAATCTGAAGGGGAAGAAGTCTTGTCACACTGGCAAGCACCGCACAGCTGGCTGGAACGTCCCTCTGGGGTATTTGATTGACCGTGGAATGATGTCAGCCATGGGCTGCAACATCCCTCAAGGGGTTGCTGACTTCTTTAACGCCAGCTGTATCCCAGGGGCTAAAGATGACCCTGAGTCCCTGTGTCAGCTGTGTGTGGGAGATGGAGCGGGAAAATATAAGTGTGATGAAAGTGTTAATGAGCGGTACTATGCATATGATGGAGCATTCAGGTGCTTGGTTGAGAATGCAGGTGACGTCGCCTTTGTGAAGCACACAACTGTGAGCAAGAACACAGATGGTCAGGGGGAATCATGGGCGCAAGGCTTGCTCTCTGAGGACTATCAGCTCCTGTGTCGGGACGGCACCCGAAGTCCAGTCAGTGATTATGAGAGATGCCACCTGGCTCGAGTCCCTTCGAGAGGGATTGTTGTCCACCCTGACATCAGCAGTTCAGTGGTGTACAACATGTTACGTGAAGGACTGCAAAAGTCTGGGTTCCCCATGTTCTCCTCAGCAGCCTTTGATGGGACAAACTTGTTGTTCAGCGACAATTCAACCACATTTATCCAAGCAGGAAATGAAAACTATGTGGAATGGATGGGCCAGTATTATTACATACTGAGAGCCATAGACTGCACAGAGTCAGacgtGCCCTCTCGTCTGCGCTGGTGTGTCCTGTCTCATGGAGAGCAGCAAAAGTGCGCAGACATGGCTGTGgctttcaaaagcaaaaatttgATTCCTAATATTCAGTGCATCTATGGGGCATCTGTGGAGGACTGTATGAAGAAAATACAAAATAAGGAAGCTGATGCCATCACTCTTGATGGAGGTTACGTCTACACAGCGGGGAAGAGTTTTGGTTTGATACCTGCTGTTGGAGAGAGCTACACAGGAGACACTGACGGAAGCATTTATTATGCTGTGGCTGTGCTGAGGAAGAGCAACAGAGACATCCAGAGATTCAGCGACCTCAAGAGCAAGCGCTCCTGTCACACAGGTTACGGAAGGACCGCAGGCTGGAACATTCCCATGGGTCTGCTAATAGAAAAAGGCATCATAAGACCGCAGACATGCCAAGTGGCCCAAGCTGCTGGAGAGTTCTTTAAATCTGCTTGTGTACCTGGAGCCAATCAGAAGGGTTTTCCCAGTAACTTGTGCGAGCAGTGCATTGGAGACTTCAGTGGTCAGAACAAGTGTGAAAAAGGCAAGGACCTATACGACGGATACGATGGAGCCTTCAGGTGCCTTGTTGAAGATCACGGCGATGTGGCTTTTGTGAAACACTCCACTGTTTTCCAGAACACAGATGGAGTCTCGTGCTGAAGTCACTCAGTACACTAAGTGCAACTTGGCCCGTGTCCCTTCCCACGCCGTTATGATAAGACCCGATACCAACCACCACGTCATCTTTGGCCTCCTGGACAAAGCCCAGAGTTTCTTTGGAGTTAATGCTGCCTCGGGCTTCAAGATGTTTGACTCCAAACCCTACGAGGGATCTGACCTGATGTTCAAGGATTCAACTGTCACTTTAATTGGTGTAGGAGAGAGGAAGACGTATGAGGAATGGCTTGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66694 lncRNA upstream 111564 13860255 ~ 13860609 (+) True G45070
TU66675 lncRNA upstream 135354 13836607 ~ 13836819 (+) True G45056
TU66600 lncRNA upstream 310076 13661812 ~ 13662097 (+) True G44998
XR_006251162.1 lncRNA upstream 314407 13656192 ~ 13657766 (+) True LOC122346715
TU66598 lncRNA upstream 321290 13650115 ~ 13650883 (+) True G44997
TU66717 lncRNA downstream 13740 13992745 ~ 13996966 (+) True G45075
TU66727 lncRNA downstream 37430 14016435 ~ 14128344 (+) True G45084
XR_006251242.1 lncRNA downstream 150342 14129347 ~ 14131078 (+) True LOC122347615
TU66741 lncRNA downstream 151483 14130488 ~ 14130998 (+) False LOC122347615
TU66775 lncRNA downstream 235206 14214211 ~ 14215282 (+) True G45112
XM_043242793.1 mRNA upstream 270 13867877 ~ 13971903 (+) True dlg1a
XM_043242794.1 mRNA upstream 270 13867877 ~ 13971903 (+) False dlg1a
XM_043242804.1 mRNA upstream 270 13867877 ~ 13971903 (+) False dlg1a
XM_043242797.1 mRNA upstream 270 13867877 ~ 13971903 (+) False dlg1a
XM_043242795.1 mRNA upstream 270 13867877 ~ 13971903 (+) False dlg1a
XM_043242268.1 mRNA downstream 2220 13981225 ~ 13985829 (+) True lrrc40
XM_043242259.1 mRNA downstream 100623 14079628 ~ 14116522 (+) True shroom2a
XM_043242260.1 mRNA downstream 100623 14079628 ~ 14116522 (+) False shroom2a
XM_043242261.1 mRNA downstream 100623 14079628 ~ 14116522 (+) False shroom2a
XM_043242256.1 mRNA downstream 100623 14079628 ~ 14116522 (+) False shroom2a
TU66465 other upstream 562261 13394229 ~ 13409912 (+) True G44887
TU66125 other upstream 862807 13108735 ~ 13109366 (+) True G44645
TU66063 other upstream 890054 13080610 ~ 13082119 (+) False smx5
TU66085 other upstream 1191253 12766183 ~ 12780920 (+) False crocc2
TU65993 other upstream 1879718 12087399 ~ 12092455 (+) False G44588
unassigned_transcript_1264 other downstream 101928 14080933 ~ 14081004 (+) True trnag-ucc_2
TU67192 other downstream 1257206 15236211 ~ 15238200 (+) False pomgnt1
TU67233 other downstream 1379856 15358861 ~ 15459386 (+) True G45419
TU67277 other downstream 1585976 15564981 ~ 15566668 (+) True G45448
TU67943 other downstream 3207703 17186708 ~ 17187308 (+) True G45894

Expression Profile