RNA id: XM_043242842.1


Basic Information

Item Value
RNA id XM_043242842.1
length 2416
RNA type mRNA
GC content 0.38
exon number 2
gene id cav3
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 20782444 ~ 20786555 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGTGAGACAGTCagtgtgagcgagagagagagacaggagccCGGGCCGGCGCAGCTGTCCCTAGCATTCCAGGCGTGTCGTCAGTCCACAGATTGGAGAATCAAAAGGGACTAGGGGCCATTCTGACACTTTTCCTTTGGTAGTTGACTTAGTTTGCTTTAGTCCTTTTCCTTTGGACACTTCTGCTTTACATCTATCCCACTCCGACCAGTTTTGGGCCAGAGGCCCCCAATATGGCGGACCAGTATAACACCAACGAGGAGAAAATCGTGAAAGACAGTCACACCAAGGAGATTGATTTGATCAACAGGGACCCTAAGCAAATCAATGAAGATGTTGTGAAgGTGGATTTTGAGGATGTGATAGCTGAGCCCGATGGCACCCACAGCATGGATGGAGTGTGGAAGGCCAGCTACACCACCTTCACCGTCTCCAAGTACTGGTGCTACCGTGTGCTGTCGGCCATCTTTGGCATCCCCGTGGCGCTGCTGTGGGGCTTCTGCTTTGCCTGCATCTCCTTCTGTCACATTTGGGCAGTCATGCCCTGCATTAAGAGCTATCTGATCGAGACCCAGTGCCTGAGTCGAATCTACTCTCTCTGCATCCACACCTTCTGTGACCCCTTGTTCGAAGCTCTAGGGAAAATCTTCAGCAGCGTACGGGTGGCGTTACGCAAAGAGGTTTAGATTTATAAGACAAGTCAAGGTTTACATGTTCAGTCCTTggaggaaaatgttttattttaccattatcTATTATTGGAGTGTGGATTTTGAGatccttaaaaatgaaaagactaCACGAATAAAAGAATGCCCAGGGATGGTTAATCCTATGCAGTGTTTTTTATGTTCTCAGTTTATGTTAGAGGCTTTGGGAGCAATTCAGGATTAGGCCACCTGCTTTTTCAGAGAGACGTATGATGAAAGGCCTCTATTACAGACACTGGAGAATAAGTCTTATATATCATGTGGTTTCTCTCTTCGACAGATTTAAAATGGGATGTTGCTGAGTGTGGTATTTTTATCATGACAATGTCAGATATATTCTGTACAACTACTAATTAAAAagttaagtaaaaataataatggtttgaattgtttattataaatatatatttcctttttttactcttttccTACCCTATACAACAATTAAACACAGAAATTTTATTTCCCTCAGTGggacactgaaaacatttaacGTCTTTAAACTGAAGCCATGAATTTGCaatgaaatatgttttcatgAACATATTTCATCAAATTTTCCCTTTTCCCTTAATAAATACCAAATGGTTCAgctgggaaaaaataaataaataaataaataaattatgacttTGCAATTTGATCTATTTGCTTTCAGCTGCTCACTTTAGTTGGCTTATTATTCTccacttttcaaaacatttagtcACAGTTCGACATATCAGCAcacaatttatttcaataaataaaagctacagCTACACATAGTGAATGTAAATAGGCAGTATATTTTCcaggaggaaaaaaatcagTAGCTTTTGAAATAAGAAAGTAACAAGCATTTCAGTGAATAGTATATTTAAaccttataaaataaatatttcctgcTGTTAATAGCTACTGCCTTTATCATTGTCTTTATCCTTCTCATTTCGCAGCACTCATAAACAATTGTACGAAATTCACTTTTCCTCTTGTACACATATTTTCTTTAGAGTATTTTATAAAGATGAAGCTACAAACATAGGCAAcatgaaatcatgtttttagaGCGATATTAAGCAAAATATGTAACTGGAATAAACACTTTAATCTCATTGAACAAACACTCCGTCTTACAGGAAAACAACCATAAAAGTGAAGGAGTAAACAATCAGTCctttgcattttgaaaacaaaccaGGTGTTTGCCATGTTTGATTACCATGATGCACTGCAGAAACATTTTGCAAAGAGATGTGGTCCTTTGGGCATGACAGTAAAGTTTACACGTAAAATGATAAAGACCATACAGTGATAACAACATAATCATGTATGTGCCAAAAATGAAAGTGCTctgttttcttaaaacaaacaaaagtactCTCTTTTGACAAGTCAGGTTCATTAAAAAGAGCAACTGGCCATGTTTCTCATTAGCTTTCAGAAGAAACACTTCATGTGTCATCAACATCTTGTTTTCATCTGTGTGTTGTTAACCTCCTCGTCTCGAACCCATATGCGAACTGTTTTGTGTTGAGTGACAATTGCTTCCTCATAACCCATAAAATTATATAACCTGCTGTCATCTTCAATTCAATGTATGTCAAACTTGATTTTTCACAATAAGCAGTGACGATCCGATTACCTCTCACTGCCGTCTTCATGAAGGTACGGAGGCATGagtactgtaaataataaaagtttcatttttggatgaactatc

Function

GO:

id name namespace
GO:0042693 muscle cell fate commitment biological_process
GO:0007520 myoblast fusion biological_process
GO:0045214 sarcomere organization biological_process
GO:0060035 notochord cell development biological_process
GO:0042383 sarcolemma cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0005901 caveola cellular_component

KEGG:

id description
K12959 CAV3; caveolin 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69594 lncRNA downstream 75595 20612949 ~ 20706849 (-) False G46934
TU69588 lncRNA downstream 76401 20564351 ~ 20706043 (-) False G46934
TU69596 lncRNA downstream 76401 20564351 ~ 20706043 (-) False G46934
TU69597 lncRNA downstream 76401 20564351 ~ 20706043 (-) False G46934
TU69600 lncRNA downstream 76401 20564351 ~ 20706043 (-) True G46934
TU69697 lncRNA upstream 148867 20935422 ~ 20935654 (-) True G47004
XR_006251191.1 lncRNA upstream 350918 21137473 ~ 21142766 (-) True LOC122347045
TU69869 lncRNA upstream 541877 21328432 ~ 21329671 (-) True G47122
TU69891 lncRNA upstream 563716 21350271 ~ 21350507 (-) False mdfic2
TU70063 lncRNA upstream 815734 21602289 ~ 21663492 (-) True G47262
XM_043242618.1 mRNA downstream 351267 20423711 ~ 20431177 (-) True hemk1
XM_043242486.1 mRNA downstream 543784 20237274 ~ 20238660 (-) True LOC122347299
XM_043241466.1 mRNA downstream 657183 20116875 ~ 20125261 (-) True slc6a22.1
XM_043242173.1 mRNA downstream 679985 20096024 ~ 20102459 (-) False srsf3a
XM_043241340.1 mRNA upstream 8691 20795246 ~ 20799151 (-) True gpr61l
XM_043242971.1 mRNA upstream 13539 20800094 ~ 20805651 (-) True parp3
XM_043242943.1 mRNA upstream 20208 20806763 ~ 20841391 (-) False grm2a
XM_043242944.1 mRNA upstream 20208 20806763 ~ 20841082 (-) False grm2a
XM_043242942.1 mRNA upstream 20208 20806763 ~ 20841078 (-) True grm2a
TU69571 other downstream 250610 20529179 ~ 20531834 (-) True G46926
TU69405 other downstream 616165 20161440 ~ 20166279 (-) True G46840
XR_006251194.1 other downstream 679986 20096389 ~ 20102458 (-) False srsf3a
TU69304 other downstream 935046 19843044 ~ 19847398 (-) True tspo
unassigned_transcript_1266 other downstream 1115938 19666434 ~ 19666506 (-) True trnaf-gaa
XR_006251209.1 other upstream 1953417 22739972 ~ 22750947 (-) False tardbpb
XR_006251207.1 other upstream 1953417 22739972 ~ 22750947 (-) False tardbpb
XR_006251208.1 other upstream 1953417 22739972 ~ 22750947 (-) False tardbpb
XR_006251206.1 other upstream 1953417 22739972 ~ 22750947 (-) False tardbpb
XR_006251205.1 other upstream 1957707 22744262 ~ 22750947 (-) True tardbpb

Expression Profile