RNA id: XM_043242848.1


Basic Information

Item Value
RNA id XM_043242848.1
length 4316
RNA type mRNA
GC content 0.40
exon number 24
gene id stat2
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19221293 ~ 19232799 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATCAGTTTCCTGAGAAATGCTacttgtgtgtttatttactcGTCAGCTGATGTTCAGTTCAGTGCTGCATTGTCTTTACTGTATGTCTGCAAAATTCGCTTTGCAAAGTTGAGGTTTGAGGATTGCGTCTTCATAAAGAGCAGACGATTGTTTCAGgaTGACACAGTGGAAGCGATTGCAGCAGCTGGAAACAGTGCATTCTCAGAGGGCTTTTGATCTGTACAACAGAGATGAGTTCCCAATGGAAGTGAGACATTATTTGGCGCATTGGATCGAGGGCCAGGACTGGGAACGTGCTTCGCGGGACTCCTCCCAAGCCGCGTTCCTGTTTCAGGTGCTCTTGGAGAATCTGGACAACCAGTTCAGTCGTTTTgcgcaagagagagagagttttctACTGCAGCGTAATTTCAGACGCTACAAACAAAACTTTCAGAAGTATCAAGAGGAGCCTTATACTCTTGCTACTATTATCAACTGGTTCCTGGTGAAGGAGAAAGAAATCTTGAATGATGCAGAACTTGCACAGCAAGTGCAGACATTGCAGGTTCAACCAGCGGCGATGGAGTTGGAGAGCCAGAGACAAGTAGAAAAGAGTTTGAAAGACCTTAAGACTAAAGtagagGCGATGGAGCACAGCATAAGATGTTTGGAGGAGCAGCAGGATGAGTTTGATTTTAAGTATCAAACACACCGAATGGACTCTTGcacagaagaagagaagaaaatgcAAGTAGAAGGTCTTCAGAAGATGCTCAATGCACTCGATAAATGTAGAAGGAACTTCCTGTCTGATATCTCGGCTATTTTGGATGCCGCTGATGTTCTGCGCTCAGCACTTATAGACGAGGAACTGGTCGACTGGAAGCGGAGACAACAGAAGTTCTGCATTGGTGCTGCTGAGGATACAAGTCTGGAACACTTAGAGAAATGGTTCACTCAAATTATAGAGTGCATGTTCCAGCTGCAGAAGTTCTTACAGAAACTGGATGAGTTGGTAGGAAAGATGACCTACGATAATGACCCTATCCCAGCCCGAAAGACCCCTTTAAAGAGTAGAGTGGACACTCTGCTGACGCACTTGATAAAGAGCTCATTTGTTGTAGAGTCTCAGCCATCCATGCCGCAAGGTCGAGGCCCCCTGGTGCTGCGTACAAATCTTCAGTTCTCAGTTAAAGTCAGATTGTTATATAAGGTTTCTGAACTGAACCATGTTATGAAGGTGACTGTTTCTGTTAACAATGCTGCTTCACAACTTAAAGGATTTCGAAAATTTAATGTGCTCGGTACCTTAAGTAAAGCCCTTAACATGGCTGAGAGTATGAATGGGGGCATGGTCGCTGATTTCAGACATTTGACTTTAAAAGATCAGAAGGTTGGTGGTGGAGGAAAAGGAATCAATGATCTCTCATTGAGTGTGACTGAAGAACTGCACAGGATAACCTTTCAAACCCAATTTGACCATCAAGGCCTTTCTGTCCCTTTGGAGACCTCGTCTCTTCCTGTTGTGGTGATTTCAAACTCCAGTCAGCAGCAGAGTGCTTGGGCGTCCGTCCTGTGGTTTAACATGCTCTGTTCAGATCCCAAGAACGTCAAGTTTTTTGAAACCTCTCCTGCAGCCACTTGGCCGCAGTTTGGAGAAATGCTAAGTTGGCAGTTTCTCTCCTGTGGGAAACGTGGTTTAGACAGTGACCAGTTGGAGACCCTCGCAATAAAGTTCTTTGGTAAACAACAGAGCTATGACAACTGTAAGATATCCTGGACCAAGTTCAGCAAGGAGAACCTCACTGATACAAACTTCACCCTGTGGGTGTGGCTGGATGGCATTCTAACCCTGGTTAAACTCTACCTGTCAGACCTGTGGAGTGATGGGTCTATAATGGGCTTTGTCAGCAAGGGTAAAGAGAGACTTTTATTAAAGAAGAAGCAGGATGGCACTTTCCTATTGCGTTTTAGCGAAAGCATCAAAGATGGAGGAATCACATTCAGCTGGGTGCAGTACGCTAATGATGGCACTCCGAGTGTGCAAACAGTGAAACCATTTACCAGTACTGACCTTAAGCAGATTGCTTTACCTGATATCCTCTGCAACTTTCGGATCATGATAGCAGAAAATATTCCGGTTAACCCACTGTGTTACCTTTACCCAAACACTCCTAAAGACCAGGCCTTCGGCAAATACTACAGTGAAAAGACTGGAGAGGAAAATCCTTACCTGAAGTACCTCAAAACCAAGCTGGTTTTTGTCTCTAAAGAGAATGGCTGTTCTGGCGTCAGAGAGGGGCCAGAATCTGACCTGTCCACACAGGACAGAGGcccttcttctttttctgaCGCGGGTGATGATGACTTGTTTCTCCATGAGATTGAGAAGTCTCCAATGTTCTCCGCCTCCACCATTGATGACGATATGCTTAACAGTATTTTGGACAGTAAAAGCGAGTGCGGTATTCCAGATGCATTTCCTCCAACTGACCTCAACACTTCACCATCATGCCTCCAAGACAACTTTTCTGTGAGCCCTCTGGATATCCTTGCGGACGCACTCTCTCCAGACGTTGATGTTAATATCACACTGCATGAGTTTCTAAATTCTACAAACATCCTAAATGGCATAACCCTTCGAATGCTGCCGGAAGAGGCCGATGACCTTGTGCCTGAATCTGTTTTTCAAGACCTTGGCTGCCTAAACACACCGCTGACCCCCTAAATTTCATCCATTTTAACACAAATCCATAATCTAATCTCAAGCCATATAATGATTTCCGTAACTGATTTGTGGCGAAAAAGTACTGtttatattattgatttatccatttagtttttatatctGAATGTCTACACACCCAGTCATCTGTTACTTTATGTCTGttccttttttataaaaaaagcctttaaaaaggcttggaggtaaaaaaaaacctctaggATGAGGTCTTGCGATCTCACAATTCGTAAGCTGCTAGCAAATATTTGTCCTTTATAGATATAAGCtggaagaaaaatgttttattggatTTAATTCAAAGAATATCCAAGCACTTTTGCAAATGGAAATTGGTGGAGAATAGGGTTTGGACGactatttatgtaaaaaataaagatcatgtttttaTGATCCAAGTTAGCTTTTATGCAGGTTGAAAGAAAAGTTtgtattctttcattttaattaactggGCCTTAATGAAAAGATTATTTGATAGTGAACGCAATAAACTTTATTAATGTGTTAAACACATTTTGGTAATGTGAATCCGGCATTAGCTTTGAGCTAATGGTTTAAAAAGCATCTCAAGagcaaagacatttttgtgcatttgtttccGAGCATAAAACAAATTTTCCATGCACACAGTGCAATTtcagaaaaagtgaaaaaatgtctttgcagtggcaaaaattaatttaaagcacCTTAAAATAGTGCTTGtttaaaattgcataaattaattTGACGTTTAAAGGCACCAATGTagataatgcttttatttaactcTTTTTGAGGCACCTTTACTTTCTCTTTTAtgatcaatttttattttgtataaccACTATTGAGACCTGAATACTTTGCTTTTTGATTTAATGGCTAAACTTCACTAAGCTGCCCAACTTGAAGCCAAAATACTCCCATTATCCTGTTTTTGGTACTGGATAGTTCAGTCATCAATCACAGAGTTTTAATTAGGCAGAtactatttgaaaatgtaattgattatttttgacactgcttttaatattttgaaagttGAAATAAGTTTGGTTATTCCAGTTGAAGGCCGATTATTCAGAGCTTTACCTCTGGTGAGAATACTTGatcatgtttgttttagatgttaatgtcttttaaactaaatgaatttGAATTAGACTGATTGTATGATTACTCTGAGAGTAATACTGATTTCTGATGGCAGGAAAAATGCacttgagtggaaatgagtaaGTAAGATTATTTgttgtgtaaaaatgtttacagataAAGTGGATGTGTCCCTCTAACTGAATCTGTTGGGTCCTGGAGGAGTTCGGACAGTCTCAAATAGTTTTTTCATCccatatttccttttttttttctgaaatgaaatattgaatcaaagttgtttaatcattttcttGCTAAATCATTTTGTTACCCATAAGCACTTCTGTTTGAATTTTGTTGACTGTTTCAAATGCATGTAACCAAGTTTTGCAATGTATCCACTGTGAACCTTACTGTACCGTGTTTTGTATCTAAACAAGACGTTATAGAGTTTAAATACCAGTGTTAATGATGGTTCAATATCCTCCAATAAAACATCTAACGAGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007165 signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251202.1 lncRNA downstream 69599 19149746 ~ 19151694 (-) True LOC122347223
TU68847 lncRNA downstream 172457 19044704 ~ 19048836 (-) True G46477
TU68845 lncRNA downstream 172547 19044628 ~ 19048746 (-) False G46477
TU68850 lncRNA downstream 172547 19044704 ~ 19048746 (-) False G46477
TU68844 lncRNA downstream 177424 19043616 ~ 19043869 (-) True G46476
TU68953 lncRNA upstream 160679 19393477 ~ 19397730 (-) True G46540
TU68954 lncRNA upstream 160679 19393477 ~ 19397405 (-) False G46540
TU68955 lncRNA upstream 160679 19393477 ~ 19397730 (-) False G46540
XR_006251216.1 lncRNA upstream 373564 19606362 ~ 19607056 (-) True LOC122347383
TU69118 lncRNA upstream 558844 19791642 ~ 19792328 (-) True G46658
XM_043242480.1 mRNA downstream 30784 19188495 ~ 19190509 (-) True LOC122347293
XM_043242466.1 mRNA downstream 33866 19175866 ~ 19187427 (-) False eif4bb
XM_043242467.1 mRNA downstream 33867 19175866 ~ 19187426 (-) False eif4bb
XM_043242465.1 mRNA downstream 33867 19175866 ~ 19187426 (-) True eif4bb
XM_043242479.1 mRNA downstream 48122 19153039 ~ 19173171 (-) True tns2b
XM_043242852.1 mRNA upstream 473 19233271 ~ 19236817 (-) True apof
XM_043242851.1 mRNA upstream 473 19233271 ~ 19236816 (-) False apof
XM_043241812.1 mRNA upstream 11850 19244648 ~ 19250690 (-) True c1galt1b
XM_043242290.1 mRNA upstream 18735 19251533 ~ 19260149 (-) False os9
XM_043242289.1 mRNA upstream 18735 19251533 ~ 19260149 (-) True os9
XR_006251201.1 other downstream 71563 19115061 ~ 19149730 (-) False vdrb
TU68851 other downstream 165162 19055146 ~ 19056131 (-) True G46478
TU68756 other downstream 503805 18714174 ~ 18717488 (-) True G46423
TU68751 other downstream 576159 18644306 ~ 18645134 (-) True G46420
XR_006251187.1 other downstream 1447186 17743715 ~ 17774107 (-) True opa1
TU68985 other upstream 320521 19553319 ~ 19555931 (-) False tsfm
TU68987 other upstream 320521 19553319 ~ 19555931 (-) False tsfm
unassigned_transcript_1266 other upstream 433636 19666434 ~ 19666506 (-) True trnaf-gaa
TU69304 other upstream 610246 19843044 ~ 19847398 (-) True tspo
XR_006251194.1 other upstream 863591 20096389 ~ 20102458 (-) False srsf3a

Expression Profile