RNA id: XM_043242852.1


Basic Information

Item Value
RNA id XM_043242852.1
length 2838
RNA type mRNA
GC content 0.41
exon number 2
gene id apof
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19233271 ~ 19236817 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gagagagaatgagaggaagagaggggacatgagggtaaataaacaaaacgccCATAGAACACATTGATCCTCTCCACGTGATGCCACATTCATCACTGGGCAATGgggccagagagagagagaagggggcAAAACGAGAGAAAGGGAGATGTATATGCTTTTGTGAAGGCTGGATTCTAACAGAGAGGTACTATCGGGATTGTTAGAAGaagagaaAATATGATGCAAGGAGATGAGCAAACCATGACAGAGTGTTCATATCTGGGTAGACAGTTCCTTCAAAACAGAAACCATGATTTGCTTGATGTTGCAGGTCTCCACAGTTCAACATGACTAAaaggaattcaaaacttaaatggTTACTTCTCATCCACCTCTTACTGTCTGATGTGGTTTTTGGCAGAGCTCCACTCCCTCAAAGAAACCTGAGGCCTTCTGTCACTTCAGTGTCTCAAACAGAGCAAGTAGAATCACATGTTATTGAAAATGATCTTGCTGCCGCCCATCGCTTGGTCTCAAACCTCTCAGCCTCTCTACAAGGTCAGCTGGATTTCCAGTGCAATGCAAGCTGTGCAGAGCTCTCTAATGGAGGCTGGAGTGGAAAGGGTTTCTCTCAGGAGCTATTAGGGTTGGCAATTGTGCCAGTTCTGGTGTCAGCAGGGTGTTTGTTTGAAGCCCAAGCCCTAGTAATGCAACTCTATGAGGTGCTGGGGCAAAATGATACACATGAATTTTTAGAGGACATTCTAGCATTGATCAAGAGAGGTAAAGAGAGAGATTCAGCACATATGGTCCATCACAATGATTTCCAAACCCCTTCTATGCTGAACTCTGAGTCTCAACGCCACCTACAggctgtaatatttaatattaatcagCTAGCTGAGGTGGGTGAGAAAGATGAAAAGGGTAAAGTTGGGCCTAGTGGGCATTGCAATGGATGGGTAAGAGTGAAAGGCACTCGGTTTCTTGGACAGGCCGCAGAACAGAGTAAGCCATTGTGTCTTGAAGAAGCACAGCAGGCTTGTGGAAGATTGGGATTCCAATGTGCAGGTGTGACCCAGGACGGCGACTCTGGATATTATCACGTTATCTTGAGGCCTGGAAGCCGTGTGGTGCCTTCATCTAACTCAGAGAGCTGGATTCACAATTGCAAAGTGGGGTCTGTCCGTTGGCGCAGAAATGGGATCCCTCAGCATCactgtgtaaatgaaaaagagGAGCGAGTGTATACAGTAGTGGAGTGGATTCCGGCAGTCTCCACGCTGTATAATCTGGGAACAGCTGTTTATTATGCATCTGTTAGCTGCTATGACACGGCAAAAGAGAGAGCCATCTTCAGCACTGTGGATCTGGGCACAGACGCCCTCATGGCCGTAACAGGGGGAACCGCTGGGGTTGCTGGTTATGCGTTGGGGGCTGGTTTAAAAACAGGTGTGAAGGCTGGGATTAAATATCTGCTGAACAGCATGAAAGAGGAAGATGACCTGGTAATGAACCAGAACAGCTGGGAGGATGGAACTCTTACTGTCCAGTAAAAAACCAAGGAGAACAAGAACAACAGCTGCATTGCTCCAGGGCCTCAAGGTTTTTTTCACTTGTGGTGAACGATGTGTAGAATGCTCTATTTCTGCATGTTCAGTCATAATAACTATGTTCAGTTATACATaccttaaagggttactccaccccataatgacaattttgtcattaatcacttactcccatgttgttccaaacctgtaaaagctttattcgtcttcagaacacaatttaagatattttggatgaaaactgggaggcgTGTAACTGTCCCATCGACTGCCATTACACTAACCGCATTTCCATTACAGATTTGCACAAAACTTTAGTGAtactttataaatgaaatatacatgtaaaaaaaaatattgtgaagcTACTGTGCTTCCATTAACCAATATTATGTGACTAAAATGTAACCTTTTGCCTCTCGCGATAAGTCATAGCAGCAGGATAGATTGGATATATTTCTTCAAAGGAGGAATATGCTTGTATCTTTATGTAGCATGGATAGCCCCTTCATAAATGTGCGTGGTGTGGCTGGTATAAACACAAGCATCGACTAGAGTGACCGCAATCAGCTTCAGTGACCGTATGAGAGCCGcaatgcaccacaaaaccaCCTCAGGTGAGCGTATTAACTGtttcctggttttcatccaaaatatatttcattgtgttcagaagatgaatgaagcttttacaagtttaagtgattaatgagaacattttcattttgctgtggagtaaccctttaatatccAAAAGTTGTTTAATGACATCAGCAGAAAGTGACATTATTTTTgagtgggaaaaaaataacagcccagcatgaacattctttttttcccaagtAACATTCCATATGGACAAGGTTATATAACTCTGTatgatatttagatttttatatattctactattataatatgatataatgtaTCATAAGTGTTTCAGACGACacaatttttatgcattatacttatttttcttgtttcctaagattgagtgtttttttttttcttaaagtctggtatttatagaaatacaattatttgaCCAGTTGTCACTTATAACATAGCTACTCAAGATTTACAGAGTCATCTGAGACTGACTCATGTTACCCATGGGTAATATTTAACTGTTTTAGGCCTTGAGTGGGAGGAGCTACTAGAACTCAAGAATACTAGAATACAAGATAAACAGAATAGGCAGCATAAAACCAAACTTTATGACTTTATACGTGTAATTGATGTATAACAGTTTcaagtaaaaatagaaatgtttttcagtatttca

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251202.1 lncRNA downstream 81577 19149746 ~ 19151694 (-) True LOC122347223
TU68847 lncRNA downstream 184435 19044704 ~ 19048836 (-) True G46477
TU68845 lncRNA downstream 184525 19044628 ~ 19048746 (-) False G46477
TU68850 lncRNA downstream 184525 19044704 ~ 19048746 (-) False G46477
TU68844 lncRNA downstream 189402 19043616 ~ 19043869 (-) True G46476
TU68953 lncRNA upstream 156660 19393477 ~ 19397730 (-) True G46540
TU68954 lncRNA upstream 156660 19393477 ~ 19397405 (-) False G46540
TU68955 lncRNA upstream 156660 19393477 ~ 19397730 (-) False G46540
XR_006251216.1 lncRNA upstream 369545 19606362 ~ 19607056 (-) True LOC122347383
TU69118 lncRNA upstream 554825 19791642 ~ 19792328 (-) True G46658
XM_043242849.1 mRNA downstream 472 19223125 ~ 19232799 (-) False stat2
XM_043242848.1 mRNA downstream 473 19221293 ~ 19232798 (-) True stat2
XM_043242850.1 mRNA downstream 2537 19221293 ~ 19230734 (-) False stat2
XM_043242480.1 mRNA downstream 42762 19188495 ~ 19190509 (-) True LOC122347293
XM_043242466.1 mRNA downstream 45844 19175866 ~ 19187427 (-) False eif4bb
XM_043241812.1 mRNA upstream 7831 19244648 ~ 19250690 (-) True c1galt1b
XM_043242290.1 mRNA upstream 14716 19251533 ~ 19260149 (-) False os9
XM_043242289.1 mRNA upstream 14716 19251533 ~ 19260149 (-) True os9
XM_043242366.1 mRNA upstream 37300 19274117 ~ 19286211 (-) False arhgef25b
XM_043242364.1 mRNA upstream 37300 19274117 ~ 19286211 (-) True arhgef25b
XR_006251201.1 other downstream 83541 19115061 ~ 19149730 (-) False vdrb
TU68851 other downstream 177140 19055146 ~ 19056131 (-) True G46478
TU68756 other downstream 515783 18714174 ~ 18717488 (-) True G46423
TU68751 other downstream 588137 18644306 ~ 18645134 (-) True G46420
XR_006251187.1 other downstream 1459164 17743715 ~ 17774107 (-) True opa1
TU68985 other upstream 316502 19553319 ~ 19555931 (-) False tsfm
TU68987 other upstream 316502 19553319 ~ 19555931 (-) False tsfm
unassigned_transcript_1266 other upstream 429617 19666434 ~ 19666506 (-) True trnaf-gaa
TU69304 other upstream 606227 19843044 ~ 19847398 (-) True tspo
XR_006251194.1 other upstream 859572 20096389 ~ 20102458 (-) False srsf3a

Expression Profile