RNA id: XM_043242881.1


Basic Information

Item Value
RNA id XM_043242881.1
length 2087
RNA type mRNA
GC content 0.46
exon number 4
gene id dr1
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 10985524 ~ 10988423 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCGGATATCCGGGAGCGTTGCATTGTGGGGTTCATTTCGTTGATCGTTAGCGGAGTGAATGAAGTAATGAATTAAGAGCTTCGGATGCTTGAACGATTCCGCCCCGGGCTTCAGCCGAACGCGCGCGGCGTCTGTGAGTTCACGCGGGCAGCTCGAGGATGACCGATCGGAGCTGAATCATGATCGGGATCAGCAGCAGAAGCAGCTCTGATGTGTGGATGTGGAGAGTCAGCGTAAACTGATCAGCCTACAGCGTTTTAGCGATCCGCTATAAGAAAGCCGACCGCGCCGCTTGAGTCTCCGCACAAAGCCGCCgctgtgggtgttttttttttcgttaacAGCCCGTTGAACTTCCTCGCCCGCTTTCGATCGCTTTGAAAGTCTGAAGCCTCTGGACAGCTCATCCCTCATGGCCTCTTCATCGGGCAACGACGATGACCTGACGATCCCGAGGGCGGCGatcaataaaatgattaaagaaaCGCTTCCCAACGTGCGAGTAGCGAACGATGCCCGAGAGCTGGTGGTGAACTGCTGCACGGAGTTCATTCACCTCGTCTCATCGGAGGCCAACGAGATCTGCAATAAATCGGAGAAGAAGACTATATCCCCAGAACATGTTATAAACGCGCTTGAAAGTCTAGGTTTCGGGTCGTACATCGCGGAAGTAAAAGACGTTCTGCAAGAGTGTAAAACTGTAGCACTTAAACGGAGGAAGGCCAGCTCTCGACTAGAGAACCTCGGCATACCCGAAGAAGAGCTGCTTCGGCAGCAACAGGAATTGTTCGCCAAGGCACGGCAGCAGCAGGCCGAGCTGGCGCAGCAGGAGTGGTTACAGATGCAGCAGGCCGCCCAGCAGGCACAGCTGGCAGCGGCTTCAGCCAGTTCCGCTCAGCAGGCCGGATCTTCCCAGGACGAAGATGAAGAGGACGACATGTGAATCCCAGCAGGCTTTCGCCCAAGCACACGGATacggatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattccagaCATGTTCGGTCtcccacacacactctgttCTCCGTAATCGTAGCAGAGAGGGACCTCTGCAGTGTTTTCTTCtacataaaacttttaaacCCCAGATCACCAGTATAGATTCGTACTGACGGTTCAGGAGCAATCGCGGGTCTTCTCCTGGGATTTGTCGCTATGTTTGCCTCGATCCACTTGTTTAGAATTATTAGCTTTTGAAAATCCCTCTTTTCCTTCTCACTTTGTTCCCGGTGCAATTGAAGGCCGTCGCCGTGAGTTTCAGCGCGTGCGGGAAGGACGTCAAGTCGCGTGACGTGGCTGTGACCCGAGGCGCACCGTGTTAATTGTCATTGGGTAACTTCAGGAGCCGGTGTTTTTCGAAATCGCATCCTGTTTTAGGCGATTTGCGTATTTCTCTTATATTTGTCTTTGTAAAATAGCTTAAAGAGACACACGTTTGGGGaacatttttttggaaagcGATTTTTACAGCCGTTCATCCCCGCTTCTTGTATTTCTCTTTGTTCTGCCGAGTGAGCTCAGAGGATGTGATTTGTAATGTAGGATGTTGCtttttggttcttttttttttttttttttagttcaagtGAGGATAAAGATTACGTGTAGATAGGCTTTTACCTGCCCTGTGTTCAGAACAGTATTCAAAGGAAAAGATTTACATGTGCAGAATAAAATCTGTCTCATAGTACCAAAGAtagaaaaactataaaaattcaGTCACCAGATAGGCTTCAGAAATCTGCTCGTGGTATTCACTCTCTGTATGAGTGCTTTGGTGCATATCGCACGGAGGCGCTCTGTATCTCACTTTGTACAATGTTTTGATAGCAGATTTTTTCCAGGTGCAATGTGTAAAAGTGGAGCTGTGAATGTGTGGTTAATTCATATCTCGTGACGACTGGTAAGGTGTAGTTGAGAAGCGTATTCACATGCCTTTGCAAAAGCTGTAAGTTGTATTCTCTAAGCAATAAAGTCGACCCGTTTTATAGACA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K21751 DR1, NC2-beta; down-regulator of transcription 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65676 lncRNA downstream 426 10948752 ~ 10985098 (-) False gng12b
TU65672 lncRNA downstream 81227 10694602 ~ 10904297 (-) True G44353
TU65673 lncRNA downstream 83417 10900802 ~ 10902107 (-) False G44353
TU65668 lncRNA downstream 90172 10687060 ~ 10895352 (-) True G44350
TU65655 lncRNA downstream 332154 10646133 ~ 10653370 (-) True G44341
TU65786 lncRNA upstream 244028 11232451 ~ 11232784 (-) True G44447
TU65788 lncRNA upstream 246067 11234490 ~ 11234694 (-) True G44449
TU65789 lncRNA upstream 246452 11234875 ~ 11235096 (-) True G44450
TU65791 lncRNA upstream 249539 11237962 ~ 11238198 (-) True G44452
TU65796 lncRNA upstream 250696 11239119 ~ 11239464 (-) True G44457
XM_043241055.1 mRNA downstream 392 10948692 ~ 10985132 (-) True gng12b
XM_043241050.1 mRNA downstream 41907 10930570 ~ 10943617 (-) False sec16b
XM_043241051.1 mRNA downstream 41907 10930570 ~ 10943617 (-) False sec16b
XM_043241052.1 mRNA downstream 41907 10930570 ~ 10943617 (-) False sec16b
XM_043241049.1 mRNA downstream 41907 10930570 ~ 10943617 (-) True sec16b
XM_043242545.1 mRNA upstream 2552 10990975 ~ 10996060 (-) True zgc:109982
XM_043242415.1 mRNA upstream 7974 10996397 ~ 11005424 (-) True scinla
XM_043241286.1 mRNA upstream 22575 11010998 ~ 11013344 (-) True si:ch73-389b16.1
XM_043241877.1 mRNA upstream 28469 11016892 ~ 11041029 (-) True btbd8
XM_043241427.1 mRNA upstream 53623 11042046 ~ 11054847 (-) False ephx4
TU65678 other downstream 268783 10710045 ~ 10716741 (-) True G44358
TU65385 other downstream 840377 10141611 ~ 10145147 (-) False cd7al
TU65247 other downstream 957889 10025578 ~ 10027635 (-) False c6h17orf67
TU65030 other downstream 1713219 9271418 ~ 9272305 (-) True G43900
TU65029 other downstream 1714602 9269188 ~ 9270922 (-) True G43899
XR_006251151.1 other upstream 66612 11055035 ~ 11069458 (-) False brdt
XR_006251152.1 other upstream 66612 11055035 ~ 11069457 (-) False brdt
unassigned_transcript_1087 other upstream 984057 11972480 ~ 11972551 (-) True trnag-ucc_1
unassigned_transcript_1088 other upstream 984286 11972709 ~ 11972780 (-) True trnap-ugg_4
unassigned_transcript_1090 other upstream 1982660 12971083 ~ 12971154 (-) True trnap-ugg_5

Expression Profile