RNA id: XM_043242887.1


Basic Information

Item Value
RNA id XM_043242887.1
length 4503
RNA type mRNA
GC content 0.52
exon number 27
gene id cachd1
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14587270 ~ 14642988 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ccggctcacacacacacacacacacacacgttcactcacacactcactttaCCCAGCGCCAACAGCCAAAGAAACTAATGTTGCCCTCTTTACCAGCGTTTGAGTTTTTAAAACTATGCCTTGACGCAATCGATCGACCCCGCTGGAGTTCGGAAAGTGGGAGAAGTGAAAAGGGAAAGTTGTGAAGTAATCGGTGAAGTTTTTCGCTGTTGCCGTGCAGGAGCGCATCGAGCCGTAATGGCGAGCCGCGCGCGGACGGGATCTCGAGTCTCTCTCGCGGCGTGGAGCAAACGCTCCCGATCACGCTGGAATAACCTGGAGATTTCAAAGTGGAGCGTAGTCGCCTTGTTGCTGGTTGTTTGCGGTGGATTTTGTGGCGCGGATAGTGAGTTTTCGATCCTGGAAGAGGCTCAAGTTTTGGCAGTGCAGATGAAGAAGCTGTCTACTCAGGAGCTGGGTGTTCTCACCATGCAGAGAATCTTCAACTCCTTTGTGTACACGGAGAAGACTTCAAATGGTGAAACAGAGGTGCAGCAGcTAGCAAAAAAGATCCGTGAGAAGTTTAACCGGTATCTGGATGTGGTGAACAGGAACAAGCAGGTGGTGGAAGCGTCTTACACAGCCCACCTCACATCCCCCCTCACAGCCATCCAGGACTGCTGCACCATCCCTCCCTCCATGATGGAATTTGATGGTAATTTTAACACCAATGTTTCGAAGACCATCAGCTGTGATCGTCTCTCCCCTACCGTCAATAGTCGAGCTTTCAACCCAGGACGAGACCTCAACTCTGTGCTGGCAGACAACCTGAAGTCCAATCCAGGGATCAAGTGGCAGTACTTCAGCTCAGAGGAGGGTATTTTCACCGTGTTTCCTGCTCACAAGTTTCACTGCAAGGGCACATACGAGCACAGGAGCAGGCCTGTGTATGTTTCGGCAGTAAGGCCGCAGTCGAAGCACATTGTAGTGATCATAGACCATGGGGCCTCCGTCACTGAGACCCAACTCCAGATCGCCCGTGATGCTGCCCTAATCATTCTCAACTCCATCGACGAGCACGATAAAatctCAGTGTTGACAATAGCAGATACTGTTCGTTCCTGCTCTCTGGATCAGTGCTACAAGAGCTTCCTCTCACCTGCTACCAGCGAGACTAAGAGGAAGATGAGCACCTTCATCAACAACGTTAAAGCGTCTGACAGCTctacccagcatgcactgggcTTCCAGAAAGCCTTTCAGTTGTTGAGGAACACAAGCAACGTCACCAGACAGCCGACTAACACCGACATGGTGATAATCTACCTGTCATCAGGCGTCACCACACGAGACTCATCCGAGCACGAAAAGAGAGCAACCCTGAGCGTGGTCAAAGAGGAGAACCGCCACCTCAACAACTCTGTCATGATCCTCACCTACGCTCTCATGAACGAAGGAATAACGGGACTTAAGGAGCTGGCCTTCTTGCGAGACCTGGCTGAGCAGAACTCTGTTAAGTACGGCGTTCCGGATCGTTCCGCCCTGCCTGTCGTGAAGGGCAGTATGATGGTTTTAAACCAGCTCAGTAACCTGGAGACCACCGTGGGCCGCTTTTACATCAACCTCCCCAATCGAATGATCGACGTGGCCTCCTTCAGCTTGCCTTATGCGGACCAGATGGGAGACGGTTTCATCATGACCGTCAGCCGGCCGTGCTACTTTGGGAACTTGTTGCTGGGTGTAGTTGGAGTGGACGTGAATCTTGCTTACATACTGGAGGATGTCACCTACTACCAGGACTCCCTGGCCTCGTATACATTCCTCATAGACAATAAAGGCTACACCCTCATGCATCCGTCACTCACCCGTCCTTACCTGATGACTGAAGCTCCCCTTCATACAGACATCATTCACTACGAGAACATCCCAGGGTTTGCTGCTGTGCGTCAAAATATCCTCAGTCTGCCTCTGGGGAGTCAGGTCATCGCTGTGCCTGTCAACTCCTCTCTGTCTTGGCACATGAACCGCCTGCGTGATCCCAGTCGAGATGCCTACAACGTCAGCTACGCTTGGAAACTGGTTCAGGACACTTCATTTATATTGTGCATAGTTTATGTTCAGCCGGAGATCCCAGTGAAGCAACTGAAAAATATGAACACAGCCCCTAGCAGCAAACTCCTGTACCACCGCCTGGATCTGCTGGGGCAGCCCAGTTCCTGCCTTCACTTTAAACAGCTCGCTACAGTCGAGAGTCCCACAGTGATGTTGTCTGCTGGTAGTTTCTCCTCTCCATATGAGCACTTGAGTCAGCCAGAAACCAAGCGCATGGTGGAGCACTACACAGCCTACCTGAGTGACAACACTCGGCTCATAGCCAACCCGGGCCTGAAGTCTTCTGTGAGGAATGAGGTGATGGCCACCAGTCACGTGACAGATGAATGGATGAGTCTTATGGAGATGAGCAGCCTCAACTGCTACATTGTGAGGCGTTACATAGCAACGCCCAATGGGGTGCTGCGGATTTACCCCGGTTCTCTCATGGACAAAGCCTTCGATCCCACCAGGAGGCAATGgTACCTACATGCTGTAGCCAATCCTGGTCTCATCACTTTTACTGGACCTTACCTTGATGTTGGAGGGGCGGGTTACGTGGTCACTATTAGCCACACCATCCATGCCTCTAGTTCTCAAAAGGCCTCTGGTTACACGGTGGCGGTTATGGGCATTGATTTCACTCTACGCTACTTCTACAAAGTTCTGTTGGATCTGCTGCCCATCTGCAACCAGGACAAGGGCAACAAAATCCGGTGTTTTATCATGGAGGACAGAGGCTATCTGGTGGCCCATCCGACCCTGATTGACCCGAAGGGCCACGCTCCAGCAGAACAGCAACATATCACTCATAAGGAGCCTCTGGTGGCCAACGACATTCTCAACCACCCCAACTTTGTGAAGAAGAACCTGTGTAACAGTTTCAGTGATCGTACCGTGCAGCGTTTCTACAAGTTTAACACCAGCATTGTCGGTGATCTGACAAACCTTGTGCACGGCAGTCACTGCTCAAAATACCGGCTCACCCGTATCCCAGGAACCAATGCGTTTGCTGGTATTGTGAATGAGACCTGTGATTCTCTGGCTTTCTGTGCCTGCAGTACTGTGGATCGTCTCTGTCTTAACTGCCACAGAATGGAGCAGAATGAATGCGAGTGCCCCTGCGAATGCCCTCTAGAGGTGAATGAATGTACTGGCAACCTCACCAACGCAGAGAACAGaaatcCGAGCTGTGACGTGCACCAAGAGCCTTTGTCTTTGACTGTAATTGAACCCAGTCTACAGGACACTCTGCCTCAGTGCATCAACACCAGATGCAGCCAGCGCTTCACCAGCAGTGACTGTTTCGGTGTTCTGGACTGTGAGTGGTGTATGGTGGACAGTGACGGAAAGACCCATCTGGATAAGCCTTACTGTGCCCTACAGAAGGAATGCTTTGGAGGGATAGTGGGTGCCAAGAGTCCTTATGTGGATGGACTGGGCATTTTAGATGAGGAGTTGGCCTCGCTGAATATGATCAAAAGTGCGCCCGTGGGGCCAGTGGCAGGAGGGATTATGGGATGCATCATGGTGCTGGTGTTGGCTGTGTATGCCTACAGGCACCAGATCCACCGCCGCAGCCATCAGCACATGTCCCCGCTGGCCGCGCAGGAGATGTCTGTCCGAATGTCCAACCTGGACAACGAACGAGATGACAGAGATGAAGACAGTCACGAAGACAGAGGAATAAtaaGTAACACTCGATTCATTGCTGCTGTTATTGAgaggcacacacacagcccAGAACGACGGCGGAGATACTGGGGCCGGTCAGGGACAGAAAGTGACCATGGTTACAGCACCATGAGCCCTCAGGAGGACAGCGAGAACCCCCCCTGCAACAACGATCCTCTCTCAGCAGGCGTGGATGTGGGCAATCACGACGAGGACCTCGACCTGGACACACCTCCACAGACAGCCGCTCTCCTCAGCCATAAGTTCCACCCGTATCGGCACCCCCACACGCACCACCCCCTGCACCTGCACACGCATCATCTCCAGGCTGCCGTCACCGTGCACAGCGTGGATGCCGAGTGCTGATCCCGCCCACCCGTGACCCCAAACCACCCGCCGGCCCTGCCTTCAATGCCACTGCTAACTTCATCCACCACCTCCATTCAGGCCCTGCATCCTGCAAAGACAAGGAGAGAACCTTAACTCCCCAAGTATCCCTGGGCAGCCGCTgaggtgttttgtgtttgtagaGCATTGGTGAACATTTGACCTCTGTAGAGGTCATTAGGGAGTGGATTTGGCAGGTTCATAACGATACAAAGCTccttatgtttttttgttttttttcgagAAACAATGAAGATGAAAGGATTATTTTTctactatttatttaacagGAGTGGAGGTGGAGCTCGTGAacggaaaaaaatatataattgactGACTGATTGAATTTGTCAGCTTTCTATTAGGCCCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67022 lncRNA downstream 93248 14493121 ~ 14494022 (-) True G45277
XR_006251155.1 lncRNA downstream 308241 14263789 ~ 14279029 (-) True LOC122346673
XR_006251130.1 lncRNA upstream 8728 14651716 ~ 14656031 (-) False LOC122346442
XR_006251129.1 lncRNA upstream 8728 14651716 ~ 14656031 (-) True LOC122346442
TU67118 lncRNA upstream 262514 14905502 ~ 14905708 (-) True G45355
TU67394 lncRNA upstream 459702 15102690 ~ 15154616 (-) True G45532
TU67412 lncRNA upstream 542164 15185152 ~ 15239640 (-) False G45543
XM_043240967.1 mRNA downstream 4269 14523682 ~ 14583001 (-) False raver2
XM_043240966.1 mRNA downstream 4273 14523682 ~ 14582997 (-) True raver2
XM_043241216.1 mRNA downstream 94804 14485606 ~ 14492466 (-) True ak4
XM_043241214.1 mRNA downstream 95480 14485606 ~ 14491790 (-) False ak4
XM_043241217.1 mRNA downstream 97104 14485606 ~ 14490166 (-) False ak4
XM_043242953.1 mRNA upstream 14896 14657884 ~ 14757952 (-) True ror1
XM_043242954.1 mRNA upstream 14896 14657884 ~ 14692231 (-) False ror1
XM_043242115.1 mRNA upstream 119723 14762711 ~ 14769897 (-) True pgm1
XM_043242114.1 mRNA upstream 127994 14770982 ~ 14780729 (-) True efcab7
XM_043242738.1 mRNA upstream 146688 14789676 ~ 14801854 (-) True alg6
TU66983 other downstream 394104 14160475 ~ 14193166 (-) True G45257
TU66636 other downstream 905996 13668528 ~ 13681274 (-) False tmem131
unassigned_transcript_1263 other downstream 1119331 13467868 ~ 13467939 (-) True trnaa-cgc_55
unassigned_transcript_1262 other downstream 1119705 13467494 ~ 13467565 (-) True trnaa-ugc_115
unassigned_transcript_1261 other downstream 1120044 13467155 ~ 13467226 (-) True trnaa-ugc_114
TU67455 other upstream 685979 15328967 ~ 15330817 (-) False LOC122347580
TU67521 other upstream 960922 15603910 ~ 15605470 (-) True G45606
TU67688 other upstream 1415980 16058968 ~ 16059767 (-) True G45730
TU67689 other upstream 1416905 16059893 ~ 16060466 (-) True G45731
TU67772 other upstream 1718212 16361200 ~ 16364020 (-) False fam183a

Expression Profile