RNA id: XM_043242890.1


Basic Information

Item Value
RNA id XM_043242890.1
length 5097
RNA type mRNA
GC content 0.47
exon number 22
gene id ube2o
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 8857534 ~ 8883164 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cattcagcagcagcagcagagatgGCGGTGCCCGCCACAGTAGCGCTTTCTCCGGCCGTGAGCCCGAGCTCCGAGCCTCCGTCCGTCGCGCTCTCTCCCACGGCAGGCGGAACCCAGCGGCTTCTGTTTACGCATGACCTGGTCTCCGGAAAACACCGCGGTGCGATGCGTTTCGGGCTCGTACGGATGATTCACGGCGAAGAGGATTTCGAAGATTCGGACTCCGAGATTGGCGGTGATGGCGGAGGGAGAGGAAGaagtggtggtggtggtggtggtggcaGCGGCGGCGGCGATGGTGGAGAAGGTGGACGAGGTGGAGGCGCTCCCGGTAACTCGGACAACGAGAGCGGGGCTGCGGACGCACGGTCGTGGCCTCTCGGTAGAGGATTCGTGCGTGTTCAGTGGTATCCCGAAGGAACGAAGCAGGATGTTCGGGAAACGAAGCTGAAACTTGAAGATCGATCTATTGTGCCTAGAGACTTTGTCCGGAGAATGAATTCAAATGATAAACAGTGTGGCATTGTGACTAACATAAACACTGAGTGTGCCGTGAAACTTGTAGGGACCAACTGTGTTCTGTATCCTGTAAACAGCAAAGACCTTCAGCATGTCTGGTCTTTTATGTACGGTGACTACATTGTATATGACTTCTGGCTTGGAAAGGTGTACGATCTCAGCATCCAAATCGTTGTGAAGCTTTCCAATGGTGCACGatgCTCTATGAGTGAGGAAGACGGCGCAAAACTCTATGATATTTACCCTCACATCAGTGATGTGGGTTTGTTCTTTGACGATGCCTATGGATTCTACCGTCAGGTTTTGATTGGGCCCTCAAAGGTTTTTGCTAATGTACAATGGCTATATGGTGTGAAGCCGGTTCTCAGCAAGAAAAGCAAGTTCAGAGTTGTTGTGGAGGAGGTTCAGGTTGTTGAGCTAAAAGTGACGTGGATTACTAAAAGTTACTCTCCAAAGGGCTCAGACAGTGTCTTCCCACCACCATCCACCATCACACAGGAGAATCTATGCAGGGTGAAGCGACTGGGCTACTTTGATCATACTCAAAGGCAGCTTGGAGAGAGAGCCTTGTATGTGTTTCCTGCCAAGAGTGAAACTACACGAATCACCTGTGAGGGTCCAGAGGGTGCACCTGCTCATCCTGAGGACCCTGTTGTTCGAAAGttaaaaagaatgtttaaaaaggAAGTGGGAAAGAAACTGACAGAAAATTCAGACACACAGAGTAACAATTCCGAATCAACTGAGAAAATGGAGGGCATGGAAGGTGAAAAGAGATCAGTGCAGGAACAGGACTGTCCTGATGATAATTCTGTTCCATGCTACCCAAACAATGGTCCTTTTCCATCCCAGGATGCTTtggaggaagaaaaagagcCACCACTGGCTGTTCTTCAGGGACAGTGGGCCCATTTGGGGGATCAAGAGTCGGATGAGGAGCCAGGGGATGATACAGATGATACCAGTTCTGTCACTTCCTCTGCCAGCTCAACAGCCTCACTTCAGAGTGGCCCAACTCGAAAAAAGAGCATTCCCCTCTCTATACGCAACCTAAAGAGAAAGCACAAGAAGAAGAGAACTAAGTTTTCACGCGAATTCAAACCAGGAGACAGGGTGGCAGTTGAGGTTGTCTCCACTGTAACCTCTGCAGATGTGATGTGGAAGGATGGTAGATTAGAGACGGGGATACGCTCCAATGACCTGATCCCTATCCAGCACCTGGACAACCATGAGTTCTGCCCTGGAGACTACGTTGTAGACAAACGACCCCAGGCTCTTCAGGATCCAGGCATCTATGGGGTTATTCAGTCAGGTGACCATAAAGCCAGAACCTGTGTTGTCAAGTGGGTCAAACTTAATGCTGCAGGCAACGATGTTGagGTGATTGGGGAAGAAGAGGACGTTAGTGTTTATGACATTGCTGATCATCCAGATTTCCATTTCCACACAACGGATATTGTCATAAGGATTGGCAACTCTGACACAGAGGATTGTGAAAATGAGAGATCTGTTGGCCAAGTGTGCAGGGTGGATCTGAGCAGTAAAGTTGAGGTTGTGTGGGCAGATAATTCTAAGACAATTGTCCTGCCACAGcaCTTGTATAATGTCGAGTCTGAGATTGAAGAAACATATTATGACTCTGCAGAGGGCAGCAGTAGTGGTGCCTCATCTGAAGAATGGGAAGATGAGAGTGATAGCTGGGAGACAGATAATGGACAATTGGAAGAGGAACCAAGTGGTGTGGAAAGCATCCCAGTCTCCTCTCCCACCACAGGTGCTAATGCCGATGGCAAAACCCATGGTGTGCATGCCTCCACGACTACAGACTTACCAGGAGCTGTCCCGACTCCTGAACTTCCTGGAGgTGTAGGCGGAGTTGCACCCGAAGAGAAACCCAGTAAAGAGACTCCACCACGTGGCTTCCGTGAGCTTAAAGAAGCTCTGAAGATTTTGGAAAGTTTAAAGAACATGACTGTTGAGCAACTCTGGACTGGATCACCAACCTCTCCCACTGCCGAACCATCAGCCACAAGTGCTGCCACAACTCCTGCTGATGCCAAACCCACAAAAGAAAAACGCTTTTTGGATGACATTAAGAAACTTCAAGAGAACTTGAAGAAAACTCTGGACAATGTGGCCATTGTAGAAGAGGATAAAATGGAGGCTGCCATTGAGGAGGAAAAAGTGACAGCGCCGGTGCAAGCAGAACCACAGACGCCTGTGCGTTCTGAGTGGCCTAGCGACACTCCGGTTTTGTGTCAACAGAGTGGAGGCAAACCGGGTGTAACCTTCACCAGTGCTAAAGGggaagtgttttctgttttggaaTGGGCACCAGACACACACTCTTTTAAAAAGATGGAGTTCCAGCCAGCAGAGGCAAAGAAGTTCTTTAGCACTGTAAGGAAAGAAATGGCCCTGCTGGCCACCTCTCTGCCTGATGGCATCATGGTGAAGACTTTTGAGGACAGAATGGACCTTTTCTCAGCTCTCATTAAGGGCCCTAACCGCACTCCCTATGAGGATGGACTCTTTCTTTTTGATATCCAACTTCCTAATATATATCCTGCTGTTCCTCCTCTCTTCCGTTACCTCTCTCAGTGCAGTGGTCGACTTAACCCAAACTTGTATGACAATGGGAAGGTTTGTGTCAGTCTTCTTGGCACCTGGATTGGAAAGGGTACTGAAAGATGGACCAGCAAATCCAGTCTACTGCAAGTGCTTATCTCTATACAAGGTCTGATCCTTGTCAATGAGCCGTACTATAATGAGGCTGGCTTTGACAGTGACCGAGGCCTTCAGGAGGGTTACGAGAACAGTCGCTGCTACAACGAGATGGCACTTATTAAGATGGTGCAGTCAATGACTCAACTTCTCCAGCAGCCTGTGGAAGTCTTTCAGCAGGAGATCTGTGAGCACTTTACCTGTAGCGGATGGCGTCTGGTCCATCGACTGGAGTCCTGGCTAGAATTGGATGGGGCAGTGACTGACCGTGCTTTACGTTGTGGTGTTGGAAGCCTCCATGGAGAACCTCTAGAAGAGATCCCATCAGCTCTGGCACACAGCAGCCCAAGCAAGCAGGATGTGCGAAGCGAAGAGGAGCTTGAGGACTCAGGTCTCAGTCCCTCCACAGTGGGGCCCAGTGAACTTCCTGGCTCAGGTGGGCAACGGGACCTGAGCCAGAATTCAGAGTGTGATAGTTCAGTTGTGGGTGGTGTAGGATCAGAAATAACAGAAGGTTCTGAAGGGGTGTTGGGTTTTGTGACATCACAACAAAGTATAAAACCGTATCAGGAGTCTCAGCCAGCTGTGAGACCAAAGAAACGGAGGAAGAGCTATCGTAGCTTCCTTCCAGAGCGCAGTGGCTATCCAGACATTGGATTCCCACTCTTCCCTCTTTCCAAAGGCTTTGTGAAGAGCATGCGTGTAGTTTTGCAGCAGTATCGCGCTACTCTGATGGCTGCTGGCATTCCTGACAAATAATTTCCCTCCAGTGTaatgttcttcttttttcctttttccccaCTTTGTTCAACCCAAGAGCTGCGCTTTTCCCCTTTAATCCTATGTCCAGGTCTTGGATCTGATCATCAGGCAACTAATTTTCCTACCAACTTTTGTTAATTGCTTCAtagcacttttttttgcttCGTTTTTTTGTTGCCTCTCAGTGGTCACGGAGTGGCAGCACACATTATTTGTTTCCattaaaacaatgttgaaaTTTCATATGCTTCTATCTTGTTTCCCTGACAACCACCCTGCCACCACACTGCTCTCTCAGGGAAGAATGGACAAAAACAGATGGATGTGAGACTGAGATACTGAGGCATGACTGAAGcttttgttgtgttgtgactTTACAAGATGTGTGGGTATAAACTGTATAAATTGGGTTTATTGTGCCATGGGATGCTCTAAATGGTCTTAAGCATTGTCATTTGCTAATATGGGGAGGACAGAGACTATTTTTTGATGGAATCGCCATCAAACTTTCACCACATATTGGTTTGCACAAGTTGCGAAAGTTGAgttcatttacagaaaaaaaggatGTTATTGTCAGTTTTTCCAAAAAGCTTCAGATCAGATGTGTAATTGTTGTCTTTggttaaacaaataattatatttcccAGCATGACTTGCTCTCTGGTTCATATTTTCATGTTGCTAACATTGCATCGCCATTTGAGTCTTGAGTCATTCTTTTAGAAATGCTGGTGACTTGCTTTTTCGATCCAAAATATAGTCAAAGTTGTACAACTGCCCGGTCATCTATACTGTACAGGCCCTGATCTTTCCTGCTGGTGTTTTGCACTGAAATCATATGAAAGTTGAGTGtcaagtttacatttaaaaacaacaaagcaacCAGACACTAAACAATTTCTCTTCAAACTGGAACCAAACATCCACTTTTTTTGTCCCTCCCCCTCCTTGGCACAACAAAGAAAACTTTAGTAACTAATATTCTCTGTAcagtacattatttaaaaaaaaatgtcttacacTTTTGccataaatgcatacatatcaCAAATCCAGTttacatatatgtaaataaacagtgGGACCTTT

Function

GO: NA

KEGG:

id description
K10581 UBE2O; ubiquitin-conjugating enzyme E2 O

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64892 lncRNA downstream 62794 8599796 ~ 8794740 (-) True G43791
TU64904 lncRNA downstream 149560 8706786 ~ 8707974 (-) True G43800
TU64815 lncRNA downstream 310971 8546353 ~ 8546563 (-) True G43739
TU64808 lncRNA downstream 360901 8495764 ~ 8496633 (-) True G43734
TU64790 lncRNA downstream 390888 8460906 ~ 8466646 (-) True G43719
TU64978 lncRNA upstream 139355 9022519 ~ 9022881 (-) True G43855
TU64979 lncRNA upstream 142044 9025208 ~ 9025429 (-) True G43856
TU65011 lncRNA upstream 367535 9250699 ~ 9251679 (-) True G43881
TU65008 lncRNA upstream 368822 9251986 ~ 9253068 (-) True G43880
TU65014 lncRNA upstream 372562 9255726 ~ 9256009 (-) True G43884
XM_043242528.1 mRNA downstream 308295 8547278 ~ 8549239 (-) True si:dkey-45d16.4
XM_043241334.1 mRNA downstream 332541 8506768 ~ 8524993 (-) True LOC122346602
XM_043241959.1 mRNA downstream 356266 8496635 ~ 8501268 (-) True nprl2
XM_043241652.1 mRNA downstream 377698 8466738 ~ 8479836 (-) True gga1
XM_043241829.1 mRNA downstream 418149 8431444 ~ 8439385 (-) True cfap100
XM_043242055.1 mRNA upstream 3344 8886508 ~ 8932433 (-) False LOC122347059
XM_043242054.1 mRNA upstream 3344 8886508 ~ 8932433 (-) True LOC122347059
XM_043242056.1 mRNA upstream 3344 8886508 ~ 8925700 (-) False LOC122347059
XM_043241777.1 mRNA upstream 49919 8933083 ~ 8951173 (-) True acox1
XM_043241776.1 mRNA upstream 49919 8933083 ~ 8951173 (-) False acox1
TU64905 other downstream 143676 8712021 ~ 8713858 (-) False G43801
TU64907 other downstream 145574 8708706 ~ 8711960 (-) True G43801
TU64510 other downstream 809526 8047102 ~ 8048008 (-) True G43514
TU64423 other downstream 1271167 7579895 ~ 7586367 (-) True G43463
TU64425 other downstream 1271167 7579895 ~ 7586367 (-) False G43463
TU65020 other upstream 377452 9260616 ~ 9261245 (-) True G43890
TU65026 other upstream 382838 9266002 ~ 9267324 (-) True G43896
TU65029 other upstream 386024 9269188 ~ 9270922 (-) True G43899
TU65030 other upstream 388254 9271418 ~ 9272305 (-) True G43900
TU65247 other upstream 1142414 10025578 ~ 10027635 (-) False c6h17orf67

Expression Profile